A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

a() - Method in class com.aliasi.util.Pair
Return the first value of the pair.
A - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element a.
a() - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with no attributes.
a(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attributes.
a(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attribute and value.
a(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attributes and values.
a(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attributes and values.
a(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attributes and values.
ABBR - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element abbr.
abbr() - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with no attributes.
abbr(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attributes.
abbr(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attribute and value.
abbr(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attributes and values.
abbr(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attributes and values.
abbr(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attributes and values.
ABBR_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the abbr attribute.
Abstract - Class in com.aliasi.medline
An Abstract represents the abstract of a MEDLINE document.
ABSTRACT_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Abstract element.
ABSTRACT_TEXT_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The AbstractText element.
AbstractCharLmRescoringChunker<B extends NBestChunker,O extends LanguageModel.Process,C extends LanguageModel.Sequence> - Class in com.aliasi.chunk
An AbstractCharLmRescoringChunker provides the basic character language-model rescoring model used by the trainable CharLmRescoringChunker and its compiled version.
AbstractCharLmRescoringChunker(B, int, O, Map<String, Character>, Map<String, C>) - Constructor for class com.aliasi.chunk.AbstractCharLmRescoringChunker
Construct a rescoring chunker based on the specified underlying chunker, with the specified number of underlying chunkings rescored, based on the models and type encodings provided in the last three arguments.
AbstractCommand - Class in com.aliasi.util
A CommandLineArguments object represents a the command-line arguments.
AbstractCommand(String[]) - Constructor for class com.aliasi.util.AbstractCommand
Constructs a command-line arguments object from the specified arguments list using no default values.
AbstractCommand(String[], Properties) - Constructor for class com.aliasi.util.AbstractCommand
Constructs a command-line arguments object from the specified arguments using the specified properties as default values.
AbstractDictionary<C> - Class in com.aliasi.dict
An AbstractDictionary is a dictionary with convenience implementations of most methods.
AbstractDictionary() - Constructor for class com.aliasi.dict.AbstractDictionary
Construct an abstract dictionary.
AbstractDiscreteDistribution - Class in com.aliasi.stats
An AbstractDiscreteDistribution provides a default abstract implementation of discrete distributions.
AbstractDiscreteDistribution() - Constructor for class com.aliasi.stats.AbstractDiscreteDistribution
Construct an abstract discrete distribution.
AbstractExternalizable - Class in com.aliasi.util
The AbstractExternalizer is an adapter for read resolved externalizables.
AbstractExternalizable() - Constructor for class com.aliasi.util.AbstractExternalizable
Construct an abstract externalizable.
AbstractHierarchicalClusterer<E> - Class in com.aliasi.cluster
An AbstractHierachicalClusterer provides an adapter for clustering for hierarchical clusterers.
AbstractHierarchicalClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.AbstractHierarchicalClusterer
Construct an abstract hierarchical clusterer with the specified maximum distance.
AbstractHmm - Class in com.aliasi.hmm
An AbstractHmm is an abstract implementation of a hidden Markov model which manages a symbol table and defines the basic methods in terms of the symbolic linear probability methods.
AbstractHmm(SymbolTable) - Constructor for class com.aliasi.hmm.AbstractHmm
Construct an HMM with the specified symbol table.
AbstractHmmEstimator - Class in com.aliasi.hmm
An HmmEstimator may be used to train a hidden Markov model (HMM).
AbstractHmmEstimator(SymbolTable) - Constructor for class com.aliasi.hmm.AbstractHmmEstimator
Construct an HMM estimator with the specified tag symbol table.
AbstractMatrix - Class in com.aliasi.matrix
An AbstractMatrix implements most of a matrix's functionality in terms of methods for accessing numbers of rows and columns and values.
AbstractMatrix() - Constructor for class com.aliasi.matrix.AbstractMatrix
Construct an abstract matrix.
AbstractMedTagParser - Class in com.aliasi.corpus.parsers
The AbstractMedTagParser class provides an adapter for NCBI's MedTag corpora, including GeneTag and MedPost.
AbstractMedTagParser() - Constructor for class com.aliasi.corpus.parsers.AbstractMedTagParser
Construct an abstract MedTag parser with no handler specified.
AbstractMedTagParser(TagHandler) - Constructor for class com.aliasi.corpus.parsers.AbstractMedTagParser
Construct an abstract MedTag parser with the specified tag handler.
AbstractMentionChain - Class in com.aliasi.coref
An abstract implementation of a mention chain in terms of matching and killing functions.
AbstractMentionChain(Mention, int, int) - Constructor for class com.aliasi.coref.AbstractMentionChain
 
AbstractMentionFactory - Class in com.aliasi.coref
The AbstractMentionFactory class implements the mention factory interface using linguistically-motivated abstract methods.
AbstractMentionFactory(TokenizerFactory) - Constructor for class com.aliasi.coref.AbstractMentionFactory
Construct an abstract mention factory with the specified tokenizer factory.
AbstractSentenceModel - Class in com.aliasi.sentences
An AbstractSentenceModel implements a sentence model in terms of the method that adds indices to the collection.
AbstractSentenceModel() - Constructor for class com.aliasi.sentences.AbstractSentenceModel
Construct an abstract sentence model.
AbstractVector - Class in com.aliasi.matrix
An AbstractVector implements most of a vector's functionality in terms of methods for dimensionality and values.
AbstractVector() - Constructor for class com.aliasi.matrix.AbstractVector
Construct an abstract vector.
abstrct() - Method in class com.aliasi.medline.Article
Returns the abstract for this article, or null if there is no abstract.
accept(String) - Method in class com.aliasi.io.FileExtensionFilter
Returns true if the specified file name has an acceptable suffix as specified in the constructor.
accept(File) - Method in class com.aliasi.io.FileNameFilter
Return true if a file is acceptable to this filter.
accept(String) - Method in class com.aliasi.io.FileNameFilter
Return true if files with the specified name should be accepted.
accept(E) - Method in class com.aliasi.util.Iterators.Filter
Returns true for objects returned by the contained iterator that should be returned by this iterator.
ACCEPT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the accept attribute.
ACCEPT_CHARSET - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the accept-charset attribute.
acceptCategory() - Method in class com.aliasi.classify.BinaryLMClassifier
Returns the category assigned to matching/accepted cases.
ACCESSION_NUMBER_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The AccessionNumber element.
accessionNumbers() - Method in class com.aliasi.medline.DataBank
Returns the list of accession numbers for molecular sequences in this database.
ACCESSKEY - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the accesskey attribute.
accuracy() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the sample accuracy of the responses.
accuracyDeviation() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the standard deviation of the accuracy.
acronym() - Method in class com.aliasi.medline.Grant
Returns a two-letter acronym for the type of this grant, or the empty (zero length) string if none was provided.
ACRONYM - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element acronym.
acronym() - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with no attributes.
acronym(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attributes.
acronym(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attribute and value.
acronym(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attributes and values.
acronym(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attributes and values.
acronym(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attributes and values.
ACRONYM_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Acronym element.
ACTION - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the action attribute.
add(Chunk) - Method in class com.aliasi.chunk.ChunkingImpl
Add a chunk this this chunking.
add(Mention, int) - Method in class com.aliasi.coref.AbstractMentionChain
Adds the specified mention appearing at the specified sentence offset to this mention chain, and calls the method AbstractMentionChain.add(Mention), which may be overridden by subclasses to carry out additional bookkeeping when new mentions are added.
add(Mention) - Method in class com.aliasi.coref.AbstractMentionChain
Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Mention, int) - Method in interface com.aliasi.coref.MentionChain
Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Mention) - Method in class com.aliasi.coref.MentionChainImpl
Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Vector) - Method in class com.aliasi.matrix.AbstractVector
Returns the result of adding the specified vector to this vector.
add(Vector) - Method in class com.aliasi.matrix.DenseVector
 
add(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
 
add(Vector) - Method in interface com.aliasi.matrix.Vector
Returns a new vector that is the reuslt of adding this vector to the specified vector.
add(char, char[]) - Static method in class com.aliasi.util.Arrays
Return the result of adding the specified character to the specified sorted character array.
add(E) - Method in class com.aliasi.util.BoundedPriorityQueue
Deprecated. Use BoundedPriorityQueue.offer(Object) instead. In the next release, this will be redefined to match the collection interface.
add(E) - Method in class com.aliasi.util.MinMaxHeap
Add the element to the heap.
add(E) - Method in class com.aliasi.util.NBestSet
Deprecated. Add the specified object to this n-best set.
add(E) - Method in class com.aliasi.util.ShortPriorityQueue
Deprecated. Use ShortPriorityQueue.offer(Object) instead.
addAll(Collection<Chunk>) - Method in class com.aliasi.chunk.ChunkingImpl
Adds all of the chunks in the specified collection to this chunking.
addAll(Collection<? super E>, E[]) - Static method in class com.aliasi.util.Collections
Deprecated. Use java.util.Collections.addAll(Collection,Object[]) instead.
addAll(Collection<? extends E>) - Method in class com.aliasi.util.NBestSet
Deprecated. Add the elements of the collection one by one.
addCase(Chunking, Chunking) - Method in class com.aliasi.chunk.ChunkingEvaluation
Add an evaluation case consisting of a reference chunk set and a response chunk set.
addCase(String, E) - Method in class com.aliasi.classify.ClassifierEvaluator
Adds a test case for the specified input with the specified reference category.
addCase(boolean, boolean) - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Adds a case with the specified reference and response classifications.
addCase(boolean, double) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Add a case with the specified correctness and response score.
addCase(String[], String[], String[], TagWordLattice, Iterator<ScoredObject<String[]>>) - Method in class com.aliasi.hmm.HmmEvaluation
Deprecated. Adds a complete response case for evaluation, consisting of the specified tokens, reference tags, first-best response tags, lattice of forward-backward confidence-based scores, and an iterator over the n-best list.
addCase(Chunking, Chunking) - Method in class com.aliasi.sentences.SentenceEvaluation
Add the case corresponding to the specified reference and response chunkings.
addCase(String, String) - Method in class com.aliasi.spell.SpellEvaluator
Adds a training case to the spelling evaluator in the form of input text and its corrected form.
addCase(Tagging<E>, TagLattice<E>) - Method in class com.aliasi.tag.MarginalTaggerEvaluator
Add a case for evaluation consisting of the gold-standard reference tagging and a lattice representing the output of a marginal tagger.
addCase(Tagging<E>, Iterator<ScoredTagging<E>>) - Method in class com.aliasi.tag.NBestTaggerEvaluator
Add a test case consisting of the specified reference tagging and iterator over responses.
addCase(Tagging<E>, Tagging<E>) - Method in class com.aliasi.tag.TaggerEvaluator
Add a test case to this evaluator consisting of the specified reference and response taggings.
addClassification(String, C, E) - Method in class com.aliasi.classify.ClassifierEvaluator
Adds the specified classification as a response for the specified reference category.
addClassification(String, C) - Method in class com.aliasi.classify.ClassifierEvaluator
Adds the specified classification as a response for the specified reference category, treating the input as null.
addDefaultProperty(String, String) - Method in class com.aliasi.util.AbstractCommand
Adds the specified key and value as default arguments.
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.AbstractDictionary
Adds the specified dictionary entry to the dictionary.
addEntry(DictionaryEntry<C>) - Method in interface com.aliasi.dict.Dictionary
Adds the specified dictionary entry to the dictionary.
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.MapDictionary
 
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.TrieDictionary
Equal entries will be ignored.
AddFeatureExtractor<E> - Class in com.aliasi.features
An AddFeatureExtractor returns feature vectors that result from summing the feature vectors returned by a collection of contained feature extractors.
AddFeatureExtractor(Collection<? extends FeatureExtractor<? super E>>) - Constructor for class com.aliasi.features.AddFeatureExtractor
Construct an additive feature extractor from the specified collection of extractors.
AddFeatureExtractor(FeatureExtractor<? super E>, FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.AddFeatureExtractor
Construct an additive feature extractor from the specified pair of extractors.
addFirstBestCase(String[], String[], String[]) - Method in class com.aliasi.hmm.HmmEvaluation
Deprecated. Adds a first-best response case with the specified tokens, reference tags, and first-best response tags.
addIntercept() - Method in class com.aliasi.classify.BigFeatureVectorClassifier
 
addInterceptFeature() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns true if this classifier automatically adds an intercept feature to each feature vector.
addInterceptFeature() - Method in class com.aliasi.crf.ChainCrf
Returns true if this CRF adds an intercept feature with value 1.0 at index 0 to all feature vectors.
addKnownToken(String) - Method in class com.aliasi.hmm.HmmEvaluation
Deprecated. Adds the specified token to the set of known tokens.
addLatticeCase(String[], String[], TagWordLattice) - Method in class com.aliasi.hmm.HmmEvaluation
Deprecated. Add a lattice-based response case with the specified tokens, reference tags and lattice.
addMember(K, M) - Method in class com.aliasi.util.ObjectToSet
Add a member to the value of the set mapped to by the specified key.
addMembers(K, Set<? extends M>) - Method in class com.aliasi.util.ObjectToSet
Adds a set of members to the value of the set mapped to by the specified key.
addMisses(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Incrments the positive reference count without adding a return case from the classifier.
addNBestCase(String[], String[], Iterator<ScoredObject<String[]>>) - Method in class com.aliasi.hmm.HmmEvaluation
Deprecated. Add an n-best response case with the specified tokens, reference tags and n-best iterator.
ADDRESS - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element address.
address() - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with no attributes.
address(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attributes.
address(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attribute and value.
address(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attributes and values.
address(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attributes and values.
address(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attributes and values.
addSimpleAttribute(AttributesImpl, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Add a local name and value to an attributes implementation as type "CDATA".
addState(String) - Method in class com.aliasi.hmm.AbstractHmm
Adds the state with the specified name to this hidden Markov model.
addSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler
Add a symbol to the symbol table to be compiled.
addSynonym(String, String) - Method in class com.aliasi.coref.matchers.SynonymMatch
Adds the two phrases as synonyms for one another.
affiliation() - Method in class com.aliasi.medline.Article
Returns the affiliation for the the first author of this article.
affiliation() - Method in class com.aliasi.medline.Author
Returns the affiliation for this author.
affiliation() - Method in class com.aliasi.medline.Investigator
Returns the affiliation of this investigator, or the empty (zero length) string if none was provided.
AFFILIATION_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Affiliation element.
agency() - Method in class com.aliasi.medline.Grant
Returns a three-letter acronym for the agency providing this grant, or the empty (zero length) string if none was provided.
AGENCY_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Agency element.
ALIGN - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the align attribute.
allDigits(String) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters making up the specified string are digits.
allDigits(char[], int, int) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified range are digits.
allLetters(char[]) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified array are letters.
allLowerCase(char[]) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified array are lower case letters.
allLowerCase(CharSequence) - Static method in class com.aliasi.util.Strings
Returns true if the specified character sequence contains only lowercase letters.
allowDelete() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows deletions.
allowInsert() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows insertions.
allowMatch() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows matches.
allowSubstitute() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows substitutions.
allowTranspose() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows transpositions.
allPunctuation(char[]) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified array are punctuation as specified by Strings.isPunctuation(char).
allPunctuation(String) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified string are punctuation as specified by Strings.isPunctuation(char).
allSymbols(char[]) - Static method in class com.aliasi.util.Strings
Returns true if none of the characters in the specified array are letters or digits.
allUpperCase(char[]) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified array are upper case letters.
allWhitespace(StringBuilder) - Static method in class com.aliasi.util.Strings
Returns true if the specified buffer contains only whitespace characters.
allWhitespace(String) - Static method in class com.aliasi.util.Strings
Returns true if the specified string contains only whitespace characters.
allWhitespace(char[], int, int) - Static method in class com.aliasi.util.Strings
Returns true if the specified range of the specified character array only whitespace characters, as defined for characters by Strings.isWhitespace(char c).
ALT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the alt attribute.
AnnealingSchedule - Class in com.aliasi.stats
An AnnealingSchedule instance implements a method to return the learning rate for a specified epoch.
AnnealingSchedule() - Constructor for class com.aliasi.stats.AnnealingSchedule
Do-nothing constructor to be used by concrete implementations.
APPLET - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element applet.
applet() - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with no attributes.
applet(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attributes.
applet(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attribute and value.
applet(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attributes and values.
applet(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attributes and values.
applet(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attributes and values.
ApproxDictionaryChunker - Class in com.aliasi.dict
An ApproxDictionaryChunker implements a chunker that produces chunks based on weighted edit distance of strings from dictionary entries.
ApproxDictionaryChunker(TrieDictionary<String>, TokenizerFactory, WeightedEditDistance, double) - Constructor for class com.aliasi.dict.ApproxDictionaryChunker
Construct an approximate dictionary chunker from the specified dictionary, tokenizer factory, weighted edit distance and distance bound.
ARCHIVE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the archive attribute.
AREA - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element area.
area() - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with no attributes.
area(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attributes.
area(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attribute and value.
area(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attributes and values.
area(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attributes and values.
area(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attributes and values.
areaUnderPrCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the area under the recall-precision curve with interpolation as specified.
areaUnderRocCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the area under the receiver operating characteristic (ROC) curve.
array(E[]) - Static method in class com.aliasi.util.Iterators
Returns an iterator over the specified array of objects.
Arrays - Class in com.aliasi.util
Static utility methods for processing arrays.
arraySlice(E[], int, int) - Static method in class com.aliasi.util.Iterators
Returns a newly constructed iterator over the specified object array slice.
arrayToCSV(String[][]) - Static method in class com.aliasi.util.Arrays
Converts the two-dimensional array of strings to comma-separated value notaiton.
arrayToCSV(Object[]) - Static method in class com.aliasi.util.Arrays
Converts an array of objects to comma-separated values notation.
arrayToString(Object[]) - Static method in class com.aliasi.util.Arrays
Returns the concatenation of the string representations of the specified objects separated by commas, with the whole surrounded by square brackets and separated by a comma.
arrayToStringBuilder(StringBuilder, Object[]) - Static method in class com.aliasi.util.Arrays
Appends to the string buffer the concatenation of the string representations of the specified objects separated by commas, with the whole surrounded by square brackets and separated by a comma.
Article - Class in com.aliasi.medline
An Article represents the content of the Article element of a MEDLINE citation.
article() - Method in class com.aliasi.medline.MedlineCitation
Returns the article for this citation, containing the information derived from the cited article itself.
ARTICLE_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Article element.
ARTICLE_TITLE_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The ArticleTitle element.
articleDate() - Method in class com.aliasi.medline.Article
Returns the date on which the publisher released an electronic version of this article.
ArticleDate - Class in com.aliasi.medline
An ArticleDate represents the date on which the publisher created an electronic version of an article.
articleTitle() - Method in class com.aliasi.medline.Article
Returns the title of this article.
articleTitleText() - Method in class com.aliasi.medline.Article
Return the article title without any brackets that may have been added to indicate translation and without any indication of the author having translated it.
articleTranslated() - Method in class com.aliasi.medline.Article
Returns true if the article has been translated from a language other than English.
ASCII - Static variable in class com.aliasi.util.Strings
String representing the ASCII encoding for characters.
assertFiniteNonNegative(String, double) - Static method in class com.aliasi.util.Math
Deprecated. Use Exceptions.finiteNonNegative(String,double) instead.
asSymbolTable(String[]) - Static method in class com.aliasi.symbol.SymbolTableCompiler
Returns a compiled symbol table constructed from the specified list of symbols with symbol identifiers determined by array position.
Author - Class in com.aliasi.medline
An instance of Author represents an author of a paper, including information about name, affiliation, title, and various qualifiers and dates.
AUTHOR_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Author element.
AUTHOR_LIST_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The AuthorList element.
authorList() - Method in class com.aliasi.medline.Article
Returns the author list for this article.
AuthorList - Class in com.aliasi.medline
An AuthorList represents the authors of a particular article.
authors() - Method in class com.aliasi.medline.AuthorList
Returns the authors of this article.
AutoCompleter - Class in com.aliasi.spell
An AutoCompleter maintains a dictionary of phrases with counts and provides suggested completions based on prefix matching by weighted edit distance and phrase likelihood.
AutoCompleter(Map<String, ? extends Number>, WeightedEditDistance, int, int, double) - Constructor for class com.aliasi.spell.AutoCompleter
Construct an automatic completer from the specified phrases, phrase counts, edit distance, and search parameters.
available() - Method in class com.aliasi.io.BitInput
Returns number of bits available for reading without blocking.
availableTopics() - Static method in class com.aliasi.corpus.parsers.Reuters21578Parser
Returns an array consisting of all of the available topics in the Reuters collection.
averageConditionalProbability(String, String) - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the average conditional probability of the specified response category for test cases with the specified reference category.
averageConditionalProbabilityReference() - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the average over all test cases of the conditional probability of the response that matches the reference category.
averageLog2JointProbability(String, String) - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the average log (base 2) joint probability of the response category for cases of the specified reference category.
averageLog2JointProbabilityReference() - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the average over all test cases of the joint log (base 2) probability of the response that matches the reference category.
averagePrecision() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns point-wise average precision of points on the uninterpolated precision-recall curve.
averageRank(String, String) - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the average rank of the specified response category for test cases with the specified reference category.
averageRankReference() - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the average over all test samples of the rank of the the response that matches the reference category.
averageScore(String, String) - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the average score of the specified response category for test cases with the specified reference category.
averageScoreReference() - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the average over all test cases of the score of the response that matches the reference category.
AXIS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the axis attribute.

B

b() - Method in class com.aliasi.util.Pair
Return the second value of the pair.
B - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element b.
b() - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with no attributes.
b(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attributes.
b(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attribute and value.
b(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attributes and values.
b(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attributes and values.
b(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attributes and values.
b3ClusterF() - Method in class com.aliasi.cluster.ClusterScore
Returns the F1 measure of the B3 precision and recall metrics with equal cluster weighting.
b3ClusterPrecision() - Method in class com.aliasi.cluster.ClusterScore
Returns the precision as defined by B3 metric with equal cluster weighting.
b3ClusterRecall() - Method in class com.aliasi.cluster.ClusterScore
Returns the recall as defined by B3 metric with equal cluster weighting.
b3ElementF() - Method in class com.aliasi.cluster.ClusterScore
Returns the F1 measure of the B3 precision and recall metrics with equal element weighting.
b3ElementPrecision() - Method in class com.aliasi.cluster.ClusterScore
Returns the precision as defined by B3 metric with equal element weighting.
b3ElementRecall() - Method in class com.aliasi.cluster.ClusterScore
Returns the recall as defined by B3 metric with equal element weighting.
B_GENE_TAG - Static variable in class com.aliasi.corpus.parsers.GeneTagParser
The tag used to start gene spans, "B-GENE".
backward(int, int) - Method in class com.aliasi.hmm.TagWordLattice
Deprecated. Returns the backward probability up to the token of the specified index and for the tag of the specified identifier.
balanceParens() - Method in class com.aliasi.sentences.HeuristicSentenceModel
Returns true if this model does parenthesis balancing.
BARE_ARG_PREFIX - Static variable in class com.aliasi.util.AbstractCommand
The string prefixed before a number to indicate bare arguments.
bareArguments() - Method in class com.aliasi.util.AbstractCommand
Returns the array of bare arguments, in order, supplied on the command line.
BASE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element base.
base() - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with no attributes.
base(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attributes.
base(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attribute and value.
base(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attributes and values.
base(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attributes and values.
base(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attributes and values.
baseChunker() - Method in class com.aliasi.chunk.RescoringChunker
The base chunker that generates hypotheses to rescore.
baseExtractor() - Method in class com.aliasi.features.FeatureExtractorFilter
Returns the contained feature extractor.
baseFeatureExtractors() - Method in class com.aliasi.features.AddFeatureExtractor
Returns an unmodifiable view of the list of base feature extractors for this additive feature extractor.
BASEFONT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element basefont.
basefont() - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with no attributes.
basefont(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attributes.
basefont(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attribute and value.
basefont(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attributes and values.
basefont(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attributes and values.
basefont(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attributes and values.
baseName(File) - Static method in class com.aliasi.util.Files
Returns prefix of the file's name, defined as the part of the name before the final period, or the whole name if there is no final period.
baseTokenizer() - Method in class com.aliasi.tokenizer.FilterTokenizer
Deprecated. Returns the base tokenizer underlying this filtered tokenizer.
baseTokenizerFactory() - Method in class com.aliasi.tokenizer.ModifiedTokenizerFactory
Return the base tokenizer factory.
basisDistribution() - Method in class com.aliasi.stats.MultinomialDistribution
Returns the multivariate distribution that forms the basis of this multinomial distribution.
BDO - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element bdo.
bdo() - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with no attributes.
bdo(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attributes.
bdo(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attribute and value.
bdo(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attributes and values.
bdo(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attributes and values.
bdo(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attributes and values.
BEGIN_TAG_PREFIX - Static variable in class com.aliasi.chunk.BioTagChunkCodec
Prefix for begin tags, "B_".
BEGIN_TAG_PREFIX - Static variable in class com.aliasi.corpus.ChunkTagHandlerAdapter
The prefix to which a tag is appended to produce a begin tag, namely "B-".
BernoulliClassifier<E> - Class in com.aliasi.classify
A BernoulliClassifier provides a feature-based classifier where feature values are reduced to booleans based on a specified threshold.
BernoulliClassifier(FeatureExtractor<E>) - Constructor for class com.aliasi.classify.BernoulliClassifier
Construct a Bernoulli classifier with the specified feature extractor and the default feature activation threshold of 0.0.
BernoulliClassifier(FeatureExtractor<E>, double) - Constructor for class com.aliasi.classify.BernoulliClassifier
Construct a Bernoulli classifier with the specified feature extractor and specified feature activation threshold.
BernoulliConstant - Class in com.aliasi.stats
A BernoulliConstant implements a Bernoulli distribution with a constant probability of success.
BernoulliConstant(double) - Constructor for class com.aliasi.stats.BernoulliConstant
Construct a constant Bernoulli distribution with the specified success probability.
BernoulliDistribution - Class in com.aliasi.stats
A BernoulliDistribution is a multivariate distribution with two outcomes, 0 (labeled "failure") and 1 (labeled "success").
BernoulliDistribution() - Constructor for class com.aliasi.stats.BernoulliDistribution
Construct a Bernoulli distribution.
bernoulliDistribution() - Method in class com.aliasi.stats.BinomialDistribution
Returns the underlying Bernoulli (two outcome) distribution underlying this binomial distribution.
BernoulliEstimator - Class in com.aliasi.stats
A BernoulliEstimator provides a maximum likelihood estimate of a Bernoulli distribution.
BernoulliEstimator() - Constructor for class com.aliasi.stats.BernoulliEstimator
Construct a Bernoulli estimator with zero counts.
bestCategory() - Method in class com.aliasi.classify.Classification
Returns the best-scoring category.
bestForwardBackward() - Method in class com.aliasi.hmm.TagWordLattice
Deprecated. Returns the array of tags with the best forward-backward probabilities for each token position.
BIG - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element big.
big() - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with no attributes.
big(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attributes.
big(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attribute and value.
big(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attributes and values.
big(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attributes and values.
big(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attributes and values.
BigFeatureVectorClassifier<E> - Class in com.aliasi.classify
 
BigFeatureVectorClassifier(FeatureExtractor<E>, SymbolTable, boolean, Vector[], String[], int) - Constructor for class com.aliasi.classify.BigFeatureVectorClassifier
 
BigVectorClassifier - Class in com.aliasi.classify
A BigVectorClassifier provides an efficient linear classifier implementation for large numbers of categories.
BigVectorClassifier(Vector[], int) - Constructor for class com.aliasi.classify.BigVectorClassifier
Construct a big vector classifier with the specified term vectors, maximum number of results, and categories equal to the string representations of the category identifiers.
BigVectorClassifier(Vector[], String[], int) - Constructor for class com.aliasi.classify.BigVectorClassifier
Construct a big vector classifier with the specified term vectors, categories, and maximum number of results.
BinaryLMClassifier - Class in com.aliasi.classify
A BinaryLMClassifier is a boolean dynamic language model classifier based on a single language model and cross-entropy threshold.
BinaryLMClassifier(LanguageModel.Dynamic, double) - Constructor for class com.aliasi.classify.BinaryLMClassifier
Construct a binary character sequence classifier that accepts or rejects inputs based on their cross-entropy being above or below a fixed cross-entropy threshold.
BinaryLMClassifier(LanguageModel.Dynamic, double, String, String) - Constructor for class com.aliasi.classify.BinaryLMClassifier
Construct a binary character sequence classifier that accepts or rejects inputs based on their cross-entropy being above or below a fixed cross-entropy threshold.
BinomialDistribution - Class in com.aliasi.stats
A BinomialDistribution is a discrete distribution over the number of successes given a fixed number of Bernoulli trials.
BinomialDistribution(BernoulliDistribution, int) - Constructor for class com.aliasi.stats.BinomialDistribution
Construct a binomial distribution that samples from the specified Bernoulli distribution the specified number of times.
BioTagChunkCodec - Class in com.aliasi.chunk
The BioTagChunkCodec implements a chunk to tag coder/decoder based on the BIO encoding scheme and a specified tokenizer factory.
BioTagChunkCodec(TokenizerFactory, boolean) - Constructor for class com.aliasi.chunk.BioTagChunkCodec
Construct a BIO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and tagging coded if the specified flag is set.
BitInput - Class in com.aliasi.io
A BitInput wraps an underlying input stream to provide bit-level input.
BitInput(InputStream) - Constructor for class com.aliasi.io.BitInput
Constructs a bit input wrapping the specified input stream.
BitOutput - Class in com.aliasi.io
A BitOutput wraps an underlying output stream to provide bit-level output.
BitOutput(OutputStream) - Constructor for class com.aliasi.io.BitOutput
Construct a bit output wrapping the specified output stream.
BitTrieReader - Class in com.aliasi.lm
A BitTrieReader provides a trie reader that wraps a bit-level input.
BitTrieReader(BitInput) - Constructor for class com.aliasi.lm.BitTrieReader
Construct a bit trie reader from the specified bit input.
BitTrieWriter - Class in com.aliasi.lm
A BitTrieWriter provides a trie writer that wraps a bit-level output.
BitTrieWriter(BitOutput) - Constructor for class com.aliasi.lm.BitTrieWriter
Construct a bit trie writer from the specified bit output with the specified maximum n-gram.
BLOCKQUOTE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element blockquote.
blockquote() - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with no attributes.
blockquote(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attributes.
blockquote(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attribute and value.
blockquote(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attributes and values.
blockquote(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attributes and values.
blockquote(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attributes and values.
BODY - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element body.
body() - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with no attributes.
body(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attributes.
body(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attribute and value.
body(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attributes and values.
body(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attributes and values.
body(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attributes and values.
BooleanMatcherAdapter - Class in com.aliasi.coref
Provides a means of implementing a Matcher that returns a constant value if a boolean condition is satisifed and the no-match score otherwise.
BooleanMatcherAdapter(int) - Constructor for class com.aliasi.coref.BooleanMatcherAdapter
Construct a boolean matcher adapter that returns the specified score.
BORDER - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the border attribute.
BOUNDARY_TOKEN - Static variable in class com.aliasi.lm.TokenizedLM
The symbol used for boundaries in the counter, -2.
boundaryIndices(String[], String[]) - Method in class com.aliasi.sentences.AbstractSentenceModel
Returns an array of indices of sentence-final tokens.
boundaryIndices(String[], String[], int, int) - Method in class com.aliasi.sentences.AbstractSentenceModel
Returns an array of indices of sentence-final tokens for the slice of the token and whitespace arrays specified.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in class com.aliasi.sentences.AbstractSentenceModel
Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in class com.aliasi.sentences.HeuristicSentenceModel
Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
boundaryIndices(String[], String[]) - Method in interface com.aliasi.sentences.SentenceModel
Returns an array of indices of sentence-final tokens.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in interface com.aliasi.sentences.SentenceModel
Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
BoundedFeatureExtractor<E> - Class in com.aliasi.features
A BoundedFeatureExtractor provides a lower-bound and upper-bound on feature values between which all values from a contained base extractor are bounded.
BoundedFeatureExtractor(FeatureExtractor<? super E>, double, double) - Constructor for class com.aliasi.features.BoundedFeatureExtractor
Construct a bounded feature extractor that bounds the feature values produced by the specified extractor to be within the specified minimum and maximum values.
BoundedPriorityQueue<E> - Class in com.aliasi.util
A BoundedPriorityQueue implements a priority queue with an upper bound on the number of elements.
BoundedPriorityQueue(Comparator<? super E>, int) - Constructor for class com.aliasi.util.BoundedPriorityQueue
Construct a bounded priority queue which uses the specified comparator to order elements and allows up to the specified maximum number of elements.
BR - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element br.
br() - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with no attributes.
br(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attributes.
br(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attribute and value.
br(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attributes and values.
br(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attributes and values.
br(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attributes and values.
BrownPosParser - Class in com.aliasi.corpus.parsers
The BrownPosParser class provides a parser for the NLTK distribution of the Brown Corpus.
BrownPosParser() - Constructor for class com.aliasi.corpus.parsers.BrownPosParser
Construct a Brown corpus part-of-speech tag parser with no handler specified.
BrownPosParser(TagHandler) - Constructor for class com.aliasi.corpus.parsers.BrownPosParser
Construct a Brown corpus part-of-speech tag parser with the specified tag handler.
BrownTextParser - Class in com.aliasi.corpus.parsers
The BrownTextParser parses the Natural Language Toolkit (NLTK) distribution of the Brown Corpus.
BrownTextParser() - Constructor for class com.aliasi.corpus.parsers.BrownTextParser
Construct a Brown text parser with a null text handler.
BrownTextParser(TextHandler) - Constructor for class com.aliasi.corpus.parsers.BrownTextParser
Construct a Brown text parser with the specified text handler.
bufferNext() - Method in class com.aliasi.util.Iterators.Buffered
Returns the next object for this iterator, or null if there are no more objects.
BUTTON - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element button.
button() - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with no attributes.
button(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attributes.
button(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attribute and value.
button(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attributes and values.
button(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attributes and values.
button(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attributes and values.
byteAsUnsigned(byte) - Static method in class com.aliasi.util.Math
Returns the integer value of reading the specified byte as an unsigned value.
bytesToHex(byte[]) - Static method in class com.aliasi.util.Strings
Returns a hexadecimal string-based representation of the specified byte array.
byteToHex(byte) - Static method in class com.aliasi.util.Strings
Deprecated. Use Integer.toHexString(b) instead.

C

cache() - Method in class com.aliasi.features.CacheFeatureExtractor
Returns the cache for this cached feature extractor.
CachedMention - Class in com.aliasi.coref
A CachedMention stores all of the retun values specified by the Mention interface.
CachedMention(String, String, Set<String>, String[], String, boolean) - Constructor for class com.aliasi.coref.CachedMention
Construct a cached mention from the specified return values.
CacheFeatureExtractor<E> - Class in com.aliasi.features
A CacheFeatureExtractor uses a cache to store a mapping from objects to their feature vector maps.
CacheFeatureExtractor(FeatureExtractor<? super E>, Map<E, Map<String, ? extends Number>>) - Constructor for class com.aliasi.features.CacheFeatureExtractor
Construct a cached feature extractor that caches the results of the specified extractor using the specified cache.
capitalized(char[]) - Static method in class com.aliasi.util.Strings
Returns true if the first character in the specified array is an upper case letter and all subsequent characters are lower case letters.
CAPTION - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element caption.
caption() - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with no attributes.
caption(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attributes.
caption(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attribute and value.
caption(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attributes and values.
caption(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attributes and values.
caption(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attributes and values.
CASE_RESTORING - Static variable in class com.aliasi.spell.CompiledSpellChecker
A weighted edit distance ordered by similarity that treats case variants as zero cost and all other edits as infinite cost.
caseAccuracy() - Method in class com.aliasi.hmm.HmmEvaluation
Deprecated. Returns the accuracy measured over entire cases.
caseAccuracy() - Method in class com.aliasi.tag.TaggerEvaluator
Return the accuracy at the entire case level.
cases() - Method in class com.aliasi.chunk.ChunkingEvaluation
Return the set of cases consisting of pairs of reference and response chunkings.
caseSensitive() - Method in class com.aliasi.dict.ExactDictionaryChunker
Returns true if this dictionary chunker is case sensitive.
categories() - Method in class com.aliasi.classify.BernoulliClassifier
Returns the categories for this classifier.
categories() - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the categories for which this evaluator stores results.
categories() - Method in class com.aliasi.classify.ConfusionMatrix
Return the array of categories for this confusion matrix.
categories() - Method in class com.aliasi.classify.LMClassifier
Returns the array of categories for this classifier.
categories() - Method in class com.aliasi.classify.TfIdfClassifierTrainer
Return the set of categories for which at least one training instance has been seen.
categories() - Method in class com.aliasi.classify.XValidatingClassificationCorpus
Returns the categories found in the cases for this corpus sorted into ascending order.
categories() - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer
Returns the array of categories used by this categorizer.
categories() - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer
Returns an array of strings representing all the categories produced by this categorizer.
categories() - Method in interface com.aliasi.tokenizer.TokenCategorizer
Returns an array of all available categories produced by this categorizer.
categoriesFound() - Method in class com.aliasi.corpus.parsers.SvmLightClassificationParser
Returns an immutable set of the categories that have been found so far.
categorize(String) - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer
Returns the category of the specified token.
categorize(String) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer
Returns the type of a token, based on its structure or other information.
categorize(String) - Method in interface com.aliasi.tokenizer.TokenCategorizer
Returns the category string for the specified token.
CATEGORIZER - Static variable in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer
This is a constant Indo-European token categorizer.
category(int) - Method in class com.aliasi.classify.RankedClassification
Returns the category with the specified rank in the classification.
category() - Method in class com.aliasi.dict.DictionaryEntry
Returns the category for this dictionary entry.
categoryDistribution() - Method in class com.aliasi.classify.LMClassifier
Returns a multivariate distribution over categories for this classifier.
categoryEntries(C) - Method in class com.aliasi.dict.AbstractDictionary
Deprecated. Use AbstractDictionary.categoryEntryList(Object) instead.
categoryEntries(C) - Method in interface com.aliasi.dict.Dictionary
Deprecated. Use Dictionary.categoryEntryList(Object) instead.
categoryEntryIt(C) - Method in class com.aliasi.dict.AbstractDictionary
Returns an iterator over the dictionary entries with the specified category.
categoryEntryIt(C) - Method in interface com.aliasi.dict.Dictionary
Returns an iterator over the dictionary entries with the specified category.
categoryEntryList(C) - Method in class com.aliasi.dict.AbstractDictionary
Returns the dictionary entries with the specified category.
categoryEntryList(C) - Method in interface com.aliasi.dict.Dictionary
Returns the dictionary entries with the specified category.
categoryEstimator() - Method in class com.aliasi.classify.DynamicLMClassifier
Deprecated. As of 3.0, use general method LMClassifier.categoryDistribution().
categorySet() - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns a set of categories for this classifier.
categorySymbols() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns a copy of the category symbols used by this classifier in the same order as used by the underlying logistic regression model.
cauchy(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Cauchy prior with the specified prior squared scales for the dimensions.
cauchy(double[]) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Cauchy prior for the specified squared scales.
CDATA_ATTS_TYPE - Static variable in class com.aliasi.xml.SimpleElementHandler
The type of character data attributes.
CELLPADDING - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the cellpadding attribute.
CELLSPACING - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the cellspacing attribute.
CENTER - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element center.
center() - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with no attributes.
center(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attributes.
center(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attribute and value.
center(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attributes and values.
center(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attributes and values.
center(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attributes and values.
ChainCrf<E> - Class in com.aliasi.crf
The ChainCrf<E> class implements linear chain conditional random field decoding and estimation for input token sequences of type E.
ChainCrf(String[], Vector[], SymbolTable, ChainCrfFeatureExtractor<E>, boolean) - Constructor for class com.aliasi.crf.ChainCrf
Construct a conditional random field from the specified tags, feature vector coefficients, symbol table for feature, feature extractors and flag indicating whether to add intercepts or not.
ChainCrf(String[], boolean[], boolean[], boolean[][], Vector[], SymbolTable, ChainCrfFeatureExtractor<E>, boolean) - Constructor for class com.aliasi.crf.ChainCrf
Construct a conditional random field from the specified tags, feature vector coefficients, symbol table for feature, feature extractors and flag indicating whether to add intercepts or not.
ChainCrfChunker - Class in com.aliasi.crf
A ChainCrfChunker implements chunking based on a chain CRF over string sequences, a tokenizer factory, and a tag to chunk coder/decoder.
ChainCrfChunker(ChainCrf<String>, TokenizerFactory, TagChunkCodec) - Constructor for class com.aliasi.crf.ChainCrfChunker
Construct a chunker based on the specified chain conditional random field, tokenizer factory and tag-chunk coder/decoder.
ChainCrfFeatureExtractor<E> - Interface in com.aliasi.crf
The ChainCrfFeatureExtractor interface specifies a method for conditional random fields to extract the necessary node and edge features for estimation and tagging.
ChainCrfFeatures<E> - Class in com.aliasi.crf
The ChainCrfFeatures interface specifies methods for extracting node and edge features for a conditional random field.
ChainCrfFeatures(List<E>, List<String>) - Constructor for class com.aliasi.crf.ChainCrfFeatures
Construct a chain CRF feature set for the specified lists of input tokens and possible output tags.
CHAR - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the char attribute.
characters(char[], int, int) - Method in class com.aliasi.sentences.SentenceAnnotateFilter
Annotates characters if all characters are being annotated, otherwise annotates if in an annotated element, otherwise passing characters directly to contained handler.
characters() - Method in class com.aliasi.tag.StringTagging
Returns the characters underlying this string tagging.
characters(char[], int, int) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated or ignored.
characters(char[], int, int) - Method in class com.aliasi.xml.GroupCharactersFilter
Adds the characters to the character accumulator.
characters(char[], int, int) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
characters(char[], int, int) - Method in class com.aliasi.xml.SAXWriter
Prints the characters in the specified range.
characters(char[], int, int) - Method in class com.aliasi.xml.SAXWriterFilter
Prints the characters in the specified range.
characters(String) - Method in class com.aliasi.xml.SimpleElementHandler
Converts the string to a character array in order to call DefaultHandler.characters(char[],int,int) to handle the characters.
characters(char[]) - Method in class com.aliasi.xml.SimpleElementHandler
Handls the specified character array by delegation to DefaultHandler.characters(char[],int,int).
characters(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Converts the string to a character array in order to call DefaultHandler.characters(char[],int,int) to handle the characters.
characters(DefaultHandler, char[]) - Static method in class com.aliasi.xml.SimpleElementHandler
Handls the specified character array by delegation to DefaultHandler.characters(char[],int,int).
characters(char[], int, int) - Method in class com.aliasi.xml.TextAccumulatorHandler
Adds the specified character slice to the string buffer.
characters(char[], int, int) - Method in class com.aliasi.xml.TextContentFilter
Handle character content, delegating unfiltered characters to the contained handler, and delegating filtered characters to TextContentFilter.filteredCharacters(char[],int,int).
characters(char[], int, int) - Method in class com.aliasi.xml.WellFormedFilter
Tests that the specified slice of characters is a well-formed sequence of unicode characters, and delegates the call to the contained handler.
charactersFollowing(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter
Returns the array of characters that have been observed following the specified character slice in unicode order.
charactersFollowing(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
 
charactersFollowing(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
 
CharacterTokenCategorizer - Class in com.aliasi.tokenizer
Returns a category for tokens made up out of a single character.
CharacterTokenCategorizer() - Constructor for class com.aliasi.tokenizer.CharacterTokenCategorizer
Deprecated. Use singleton instance CharacterTokenCategorizer.INSTANCE instead.
CharacterTokenizerFactory - Class in com.aliasi.tokenizer
A CharacterTokenizerFactory considers each non-whitespace character in the input to be a distinct token.
CharacterTokenizerFactory() - Constructor for class com.aliasi.tokenizer.CharacterTokenizerFactory
Deprecated. Use singleton instance CharacterTokenizerFactory.INSTANCE instead.
CharLmHmmChunker - Class in com.aliasi.chunk
A CharLmHmmChunker employs a hidden Markov model estimator and tokenizer factory to learn a chunker.
CharLmHmmChunker(TokenizerFactory, AbstractHmmEstimator) - Constructor for class com.aliasi.chunk.CharLmHmmChunker
Construct a CharLmHmmChunker from the specified tokenizer factory and hidden Markov model estimator.
CharLmHmmChunker(TokenizerFactory, AbstractHmmEstimator, boolean) - Constructor for class com.aliasi.chunk.CharLmHmmChunker
Construct a CharLmHmmChunker from the specified tokenizer factory, HMM estimator and tag-smoothing flag.
CharLmRescoringChunker - Class in com.aliasi.chunk
A CharLmRescoringChunker provides a long-distance character language model-based chunker that operates by rescoring the output of a contained character language model HMM chunker.
CharLmRescoringChunker(TokenizerFactory, int, int, int, double) - Constructor for class com.aliasi.chunk.CharLmRescoringChunker
Construct a character language model rescoring chunker based on the specified components.
CharLmRescoringChunker(TokenizerFactory, int, int, int, double, boolean) - Constructor for class com.aliasi.chunk.CharLmRescoringChunker
Construct a character language model rescoring chunker based on the specified components.
CHAROFF - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the charoff attribute.
CharSeqCounter - Interface in com.aliasi.lm
A CharSeqCounter counter provides counts for sequences of characters.
CharSeqMultiCounter - Class in com.aliasi.lm
A CharSeqMultiCounter combines the counts from a pair of character sequence counters.
CharSeqMultiCounter(CharSeqCounter[]) - Constructor for class com.aliasi.lm.CharSeqMultiCounter
Construct a character sequence counter from the specified array of counters.
CharSeqMultiCounter(CharSeqCounter, CharSeqCounter) - Constructor for class com.aliasi.lm.CharSeqMultiCounter
Construct a multi-counter from the specified pair of counters.
charSequence() - Method in class com.aliasi.chunk.ChunkAndCharSeq
Return the underlying character sequence for this chunk.
charSequence() - Method in interface com.aliasi.chunk.Chunking
Returns the character sequence underlying this chunking.
charSequence() - Method in class com.aliasi.chunk.ChunkingImpl
Returns the character sequence underlying this chunking.
CHARSET - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the charset attribute.
charsetName() - Method in class com.aliasi.xml.SAXWriter
Returns the name of the character set being used by this writer.
checkArgsStartEnd(char[], int, int) - Static method in class com.aliasi.util.Strings
Throws an exception if the start and end plus one indices are not in the range for the specified array of characters.
CHECKED - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the checked attribute.
checkParameterImplication(String, String) - Method in class com.aliasi.util.AbstractCommand
Throws an illegal argument exception if the first parameter is defined in the command the second parameter is not.
Chemical - Class in com.aliasi.medline
A Chemical indicates a chemical that is determined by a name and registry number.
CHEMICAL_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Chemical element.
CHEMICAL_LIST_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The ChemicalList element.
chemicals() - Method in class com.aliasi.medline.MedlineCitation
Returns the array of chemical substances mentioned in this journal.
chiSquared() - Method in class com.aliasi.classify.ConfusionMatrix
Returns Pearson's C2 independence test statistic for this matrix.
chiSquared() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the χ2 value.
chiSquared(int[]) - Method in class com.aliasi.stats.MultinomialDistribution
Returns the chi-squared statistic for rejecting the null hypothesis that the specified samples were generated by this distribution.
chiSquaredDegreesOfFreedom() - Method in class com.aliasi.classify.ConfusionMatrix
Return the number of degrees of freedom of this confusion matrix for the χ2 statistic.
chiSquaredIndependence(int[]) - Method in class com.aliasi.lm.TokenizedLM
Returns the maximum value of Pearson's C2 independence test statistic resulting from splitting the specified n-gram in half to derive a contingency matrix.
chiSquaredIndependence(double, double, double, double) - Static method in class com.aliasi.stats.Statistics
Returns Pearson's C2 goodness-of-fit statistic for independence over the specified binary contingency matrix.
chiSquaredIndependence(double[][]) - Static method in class com.aliasi.stats.Statistics
Returns the value of Pearson's C2 goodness of fit statistic for independence over the specified contingency matrix.
Chunk - Interface in com.aliasi.chunk
The Chunk interface specifies a slice of a character sequence, a chunk type and a chunk score.
chunk() - Method in class com.aliasi.chunk.ChunkAndCharSeq
Return the chunk underlying this compositie chunk and character sequence.
chunk(CharSequence) - Method in interface com.aliasi.chunk.Chunker
Return the chunking of the specified character sequence.
chunk(char[], int, int) - Method in interface com.aliasi.chunk.Chunker
Return the chunking of the specified character slice.
chunk(char[], int, int) - Method in class com.aliasi.chunk.HmmChunker
Returns a chunking of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.HmmChunker
Returns a chunking of the specified character sequence.
chunk(CharSequence) - Method in class com.aliasi.chunk.RegExChunker
Return the chunking of the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.RegExChunker
Return the chunking of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.RescoringChunker
Returns the first-best chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.RescoringChunker
Returns the first-best chunking for the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.TokenShapeChunker
Return the set of named-entity chunks derived from the uderlying decoder over the tokenization of the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.TokenShapeChunker
Return the set of named-entity chunks derived from the underlying decoder over the tokenization of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.crf.ChainCrfChunker
 
chunk(char[], int, int) - Method in class com.aliasi.crf.ChainCrfChunker
 
chunk(CharSequence) - Method in class com.aliasi.dict.ApproxDictionaryChunker
Return the approximate dictionary-based chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.dict.ApproxDictionaryChunker
Return the approximate dictionary-based chunking for the specified character sequence.
chunk(CharSequence) - Method in class com.aliasi.dict.ExactDictionaryChunker
Returns the chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.dict.ExactDictionaryChunker
Returns the chunking for the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.sentences.SentenceChunker
Return the chunking derived from the underlying sentence model over the tokenization of the specified character slice.
chunk(char[], int, int) - Method in class com.aliasi.sentences.SentenceChunker
Return the chunking derived from the underlying sentence model over the tokenization of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.tokenizer.TokenChunker
Return the chunking produced by tokenizing the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.tokenizer.TokenChunker
Return the chunking produced by tokenizing the specified character array slice.
ChunkAndCharSeq - Class in com.aliasi.chunk
The ChunkAndCharSeq is an immutable composite of a chunk and a character sequence.
ChunkAndCharSeq(Chunk, CharSequence) - Constructor for class com.aliasi.chunk.ChunkAndCharSeq
Construct a composite of the specified chunk and sequence.
Chunker - Interface in com.aliasi.chunk
The Chunker interface specifies methods for returning a chunking given a character sequence or character slice.
chunker() - Method in class com.aliasi.chunk.ChunkerEvaluator
Returns the underlying chunker for this evaluator.
ChunkerEvaluator - Class in com.aliasi.chunk
The ChunkerEvaulator class provides an evaluation framework for chunkers.
ChunkerEvaluator(Chunker) - Constructor for class com.aliasi.chunk.ChunkerEvaluator
Construct an evaluator for the specified chunker.
ChunkFactory - Class in com.aliasi.chunk
The ChunkFactory provides static factory methods for creating chunks from components.
ChunkHandler - Interface in com.aliasi.corpus
Deprecated. Use ObjectHandler<Chunking> instead.
ChunkHandlerAdapter - Class in com.aliasi.corpus
A ChunkHandlerAdapter converts a BIO-coded tag handler to a chunk handler.
ChunkHandlerAdapter(TagHandler, TokenizerFactory, boolean) - Constructor for class com.aliasi.corpus.ChunkHandlerAdapter
Create a chunk handler based on the specified tag handler and tokenizer factory.
ChunkHandlerAdapter(TokenizerFactory, boolean) - Constructor for class com.aliasi.corpus.ChunkHandlerAdapter
Construct a chunk handler based on the specified tokenizer factory and an initially null tag handler.
Chunking - Interface in com.aliasi.chunk
The Chunking interface specifies a set of chunks over a shared underlying character sequence.
ChunkingEvaluation - Class in com.aliasi.chunk
A ChunkingEvaluation stores and reports the results of evaluating response chunkings against reference chunkings.
ChunkingEvaluation() - Constructor for class com.aliasi.chunk.ChunkingEvaluation
Construct a chunking evaluation.
chunkingEvaluation() - Method in class com.aliasi.sentences.SentenceEvaluation
Return the chunking evaluation for this sentence evaluation.
ChunkingImpl - Class in com.aliasi.chunk
A ChunkingImpl provides a mutable, set-based implementation of the chunking interface.
ChunkingImpl(CharSequence) - Constructor for class com.aliasi.chunk.ChunkingImpl
Constructs a chunking implementation to hold chunks over the specified character sequence.
ChunkingImpl(char[], int, int) - Constructor for class com.aliasi.chunk.ChunkingImpl
Construct a chunking implementation to hold chunks over the specified character slice.
chunkLM(String) - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker
Returns the sequence language model for chunks of the specified type.
chunkSet() - Method in interface com.aliasi.chunk.Chunking
Returns the chunks for this chunking.
chunkSet() - Method in class com.aliasi.chunk.ChunkingImpl
Return an unmodifiable view of the set of chunks for this chunking.
ChunkTagHandlerAdapter - Class in com.aliasi.corpus
A ChunkTagHandlerAdapter converts a chunk handler to a BIO-coded tag handler.
ChunkTagHandlerAdapter() - Constructor for class com.aliasi.corpus.ChunkTagHandlerAdapter
Construct a tag handler with no specified chunk handler.
ChunkTagHandlerAdapter(ObjectHandler<Chunking>) - Constructor for class com.aliasi.corpus.ChunkTagHandlerAdapter
Construct a tag handler adapter with the specified chunk handler.
CITATION_SUBSET_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The CitationSubset element.
citationSubsets() - Method in class com.aliasi.medline.MedlineCitation
Returns the array of citation subsets for this journal.
CITE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element cite.
cite() - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with no attributes.
cite(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attributes.
cite(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attribute and value.
cite(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attributes and values.
cite(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attributes and values.
cite(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attributes and values.
CITE_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the cite attribute.
CLASS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the class attribute.
CLASSID - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the classid attribute.
Classification - Class in com.aliasi.classify
A Classification provides a first-best category.
Classification(String) - Constructor for class com.aliasi.classify.Classification
Construct a classification with the specified first-best category.
ClassificationHandler<E,C extends Classification> - Interface in com.aliasi.corpus
The ClassificationHandler interface specifies a single method for operating on a classification input and result.
Classifier<E,C extends Classification> - Interface in com.aliasi.classify
The Classifier interface specifies a single method that returns the classification of an input object.
classifier() - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the classifier for this evaluator.
ClassifierEvaluator<E,C extends Classification> - Class in com.aliasi.classify
A ClassifierEvaluator provides an evaluation harness for classifiers.
ClassifierEvaluator(Classifier<E, C>, String[]) - Constructor for class com.aliasi.classify.ClassifierEvaluator
Construct a classifier evaluator for the specified classifier that records results for the specified set of categories, but does not store case information.
ClassifierEvaluator(Classifier<E, C>, String[], boolean) - Constructor for class com.aliasi.classify.ClassifierEvaluator
Construct a classifier evaluator for the specified classifier that records results for the specified set of categories, storing cases or not based on the specified flag.
classify(E) - Method in class com.aliasi.classify.BernoulliClassifier
Classify the specified input using this Bernoulli classifier.
classify(E) - Method in class com.aliasi.classify.BigFeatureVectorClassifier
 
classify(Vector) - Method in class com.aliasi.classify.BigVectorClassifier
Return a scored classification consisting of the top results for the specified vector input.
classify(E) - Method in interface com.aliasi.classify.Classifier
Return the classification of the specified object.
classify(E) - Method in class com.aliasi.classify.KnnClassifier
Return the k-nearest-neighbor classification result for the specified input object.
classify(CharSequence) - Method in class com.aliasi.classify.LMClassifier
Returns the joint classification of the specified character sequence.
classify(E) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Return the conditional classification of the specified object using logistic regression classification.
classify(E) - Method in class com.aliasi.classify.PerceptronClassifier
Return the scored classification for the specified input.
classify(CharSequence) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Return the classification of the specified character sequence.
classify(Vector) - Method in class com.aliasi.stats.LogisticRegression
Returns an array of conditional probabilities indexed by outcomes for the specified input vector.
classifyFeatures(Map<String, ? extends Number>) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Return the conditional classification of a feature map using this classifier.
classifyJoint(char[], int, int) - Method in class com.aliasi.classify.LMClassifier
A convenience method returning a joint classification over a character array slice.
classifyVector(Vector) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns the classification of the specified vector using the logistic regression model underlying this classifier.
clear() - Method in class com.aliasi.symbol.MapSymbolTable
Clears all of the symbols from the symbol table.
clear() - Method in interface com.aliasi.symbol.SymbolTable
Removes all the symbols from the symbol table.
clear() - Method in class com.aliasi.symbol.SymbolTableCompiler
Throws an unsupported operation exception.
clear() - Method in class com.aliasi.util.BoundedPriorityQueue
Removes all elements from this queue.
clear() - Method in class com.aliasi.util.FastCache
Removes all entries from this cache.
clear() - Method in class com.aliasi.util.ShortPriorityQueue
Removes all the elements from the priority queue.
clearSynonyms() - Method in class com.aliasi.coref.matchers.SynonymMatch
Removes all synonym pairs from this synonym matcher.
close() - Method in class com.aliasi.io.BitInput
Closes this input stream and releases associated resources.
close() - Method in class com.aliasi.io.BitOutput
Closes underlying output stream and releases any resources associated with the stream.
close() - Method in class com.aliasi.io.Reporter
Close this reporter and free all resources associated with it.
closeInputSource(InputSource) - Static method in class com.aliasi.util.Streams
Close the specified input source.
closeInputStream(InputStream) - Static method in class com.aliasi.util.Streams
Close an input stream.
closeOutputStream(OutputStream) - Static method in class com.aliasi.util.Streams
Close an output stream.
closeReader(Reader) - Static method in class com.aliasi.util.Streams
Close a reader.
closeWriter(Writer) - Static method in class com.aliasi.util.Streams
Close a writer.
cluster(Set<? extends E>) - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer
Returns the clustering of the specified elements.
cluster(Set<? extends E>) - Method in interface com.aliasi.cluster.Clusterer
Return a clustering of the specified set of elements.
cluster(Set<? extends E>) - Method in class com.aliasi.cluster.KMeansClusterer
Return a k-means clustering of the specified set of elements using a freshly generated random number generator without intermediate reporting.
cluster(Set<? extends E>, Random, Reporter) - Method in class com.aliasi.cluster.KMeansClusterer
Return the k-means clustering for the specified set of elements, using the specified random number generator, sending progress reports to the specified reporter.
Clusterer<E> - Interface in com.aliasi.cluster
The Clusterer interface defines a means of clustering a set of input elements
ClusterScore<E> - Class in com.aliasi.cluster
A ClusterScore provides a range of cluster scoring metrics for reference partitions versus response partitions.
ClusterScore(Set<? extends Set<? extends E>>, Set<? extends Set<? extends E>>) - Constructor for class com.aliasi.cluster.ClusterScore
Construct a cluster score object from the specified reference and response partitions.
CODE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element code.
code() - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with no attributes.
code(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attributes.
code(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attribute and value.
code(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attributes and values.
code(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attributes and values.
code(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attributes and values.
CODEBASE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the codebase attribute.
codec() - Method in class com.aliasi.crf.ChainCrfChunker
Returns the tag/chunk coder/decoder for this chunker.
coden() - Method in class com.aliasi.medline.Journal
Returns an abbreviated code name for this journal, or the empty (zero length) string if none was provided.
CODEN_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Coden element.
CODETYPE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the codetype attribute.
coefficients() - Method in class com.aliasi.crf.ChainCrf
Return the coefficient vectors for this CRF.
COL - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element col.
col() - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with no attributes.
col(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attributes.
col(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attribute and value.
col(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attributes and values.
col(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attributes and values.
col(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attributes and values.
COLGROUP - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element colgroup.
colgroup() - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with no attributes.
colgroup(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attributes.
colgroup(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attribute and value.
colgroup(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attributes and values.
colgroup(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attributes and values.
colgroup(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attributes and values.
COLLECTION_TITLE_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The CollectionTitle element.
Collections - Class in com.aliasi.util
Static utility methods for processing collections.
COLLECTIVE_NAME_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The CollectiveName element.
collectiveName() - Method in class com.aliasi.medline.Author
Returns the collective or corporate name of this author.
collocations(int, int, int) - Method in class com.aliasi.lm.TokenizedLM
Deprecated. Use TokenizedLM.collocationSet(int,int,int) instead.
collocationSet(int, int, int) - Method in class com.aliasi.lm.TokenizedLM
Returns an array of collocations in order of confidence that their token sequences are not independent.
COLS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the cols attribute.
COLSPAN - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the colspan attribute.
columnVector(int) - Method in class com.aliasi.matrix.AbstractMatrix
Returns the specified column of this matrix.
columnVector(int) - Method in interface com.aliasi.matrix.Matrix
Returns the vector of values in the specified column.
com.aliasi.chunk - package com.aliasi.chunk
Classes for extracting meaningful chunks (spans) of text.
com.aliasi.classify - package com.aliasi.classify
Classes for classifying data and evaluation.
com.aliasi.cluster - package com.aliasi.cluster
Classes for clustering data and evaluation.
com.aliasi.coref - package com.aliasi.coref
Classes for determining entity coreference within documents.
com.aliasi.coref.matchers - package com.aliasi.coref.matchers
Classes for matching and killing functions.
com.aliasi.corpus - package com.aliasi.corpus
Classes for parsing and handling various corpora.
com.aliasi.corpus.parsers - package com.aliasi.corpus.parsers
Classes for parsing various corpus data formats.
com.aliasi.crf - package com.aliasi.crf
Classes and interfaces for conditional random fields.
com.aliasi.dict - package com.aliasi.dict
Classes for handling dictionaries.
com.aliasi.features - package com.aliasi.features
Classes for extracting feature vectors from objects and parsing objects for feature handlers.
com.aliasi.hmm - package com.aliasi.hmm
Classes for estimating and decoding hidden Markov models.
com.aliasi.io - package com.aliasi.io
Classes to handle input, output, file selection, and logging.
com.aliasi.lm - package com.aliasi.lm
Classes for character- and token-based language models.
com.aliasi.matrix - package com.aliasi.matrix
Classes for matrices and vectors.
com.aliasi.medline - package com.aliasi.medline
Classes for manipulating MEDLINE data.
com.aliasi.sentences - package com.aliasi.sentences
Classes for sentence-boundary detection.
com.aliasi.spell - package com.aliasi.spell
Classes for spelling correction and edit distance.
com.aliasi.stats - package com.aliasi.stats
Classes for handling basic statical distributions and estimators.
com.aliasi.symbol - package com.aliasi.symbol
Classes for string-based symbol tables.
com.aliasi.tag - package com.aliasi.tag
Classes and interfaces for sequence tagging, including evaluators.
com.aliasi.tokenizer - package com.aliasi.tokenizer
Classes for tokenizing character sequences.
com.aliasi.util - package com.aliasi.util
Classes for general Java utilities.
com.aliasi.xml - package com.aliasi.xml
Classes for XML, including SAX filters and file visitors.
CommaSeparatedValues - Class in com.aliasi.util
A CommaSeparatedValues object represents a two-dimensional array of strings which may be read and written in comma-separated-value string representation.
CommaSeparatedValues(File, String) - Constructor for class com.aliasi.util.CommaSeparatedValues
Construct a comma-separated values array from the specified file using the specified character set.
CommaSeparatedValues(InputStream, String) - Constructor for class com.aliasi.util.CommaSeparatedValues
Construct a comma-separated values array from the specified input stream using the specified character set.
CommaSeparatedValues(Reader) - Constructor for class com.aliasi.util.CommaSeparatedValues
Construct a comma-separated values array from the specified reader.
comment(char[], int, int) - Method in class com.aliasi.xml.SAXWriter
Convenience method to write a slice of character data as a comment.
comment(String) - Method in class com.aliasi.xml.SAXWriter
Write the specified string as a comment.
CommentOrCorrection - Class in com.aliasi.medline
A CommentOrCorrection object represents one of the many possible comments or corrections that have been applied to an article.
commentOrCorrections() - Method in class com.aliasi.medline.MedlineCitation
Returns an array of the comments or corrections for this citation.
COMMENTS_CORRECTIONS_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The CommentsCorrections element.
COMPARATOR - Static variable in enum com.aliasi.io.LogLevel
Returns a comparator that compares levels by severity.
comparator() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the comparator for this sorted set.
comparator() - Static method in class com.aliasi.util.ScoredObject
Returns a comparator that sorts in ascending order of score.
comparator() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the comparator for this priority queue.
compare(E, E, Comparator<? super E>) - Static method in class com.aliasi.util.Collections
Compare the first objec to the second using the specified comparator if it is non-null, or by using their natural order.
compare(E, E) - Method in class com.aliasi.util.FilterComparator
Deprecated. Return the result of comparing the specified objects using the contained comparator.
compare(E, E) - Method in class com.aliasi.util.ReversibleComparator
Deprecated. Return the result of comparing the specified objects using the contained comparator or its inverse.
compare(E, E) - Method in class com.aliasi.util.ReversibleMTFListComparator
Deprecated. Compares the specified objects using this list comparator, returning a positive number if the first is greater than the second, a negative number if the first is less than the second, and zero if they are equal.
Compilable - Interface in com.aliasi.util
The Compilable interface specifies a general way in which an object may be compiled to an object output.
compile(Compilable) - Static method in class com.aliasi.util.AbstractExternalizable
Return the compiled form of the specified compilable.
CompiledNGramBoundaryLM - Class in com.aliasi.lm
A CompiledNGramBoundaryLM is constructed by reading the serialized form of an instance of NGramBoundaryLM.
CompiledNGramProcessLM - Class in com.aliasi.lm
A CompiledNGramProcessLM implements a conditional process language model.
CompiledSpellChecker - Class in com.aliasi.spell
The CompiledSpellChecker class implements a first-best spell checker based on models of what users are likely to mean and what errors they are likely to make in expressing their meaning.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, TokenizerFactory, Set<String>, int, double, double, double) - Constructor for class com.aliasi.spell.CompiledSpellChecker
Construct a compiled spell checker based on the specified language model and similarity edit distance, set of valid output tokens, maximum n-best size per character, and the specified edit penalities for editing known tokens or the first or second characters of tokens.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, TokenizerFactory, Set<String>, int) - Constructor for class com.aliasi.spell.CompiledSpellChecker
Construct a compiled spell checker based on the specified language model and edit distance, tokenizer factory, the set of valid output tokens, and maximum n-best size, with default known token and first and second character edit costs.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, Set<String>, int) - Constructor for class com.aliasi.spell.CompiledSpellChecker
Construct a compiled spell checker based on the specified language model and edit distance, a null tokenizer factory, the set of valid output tokens, and maximum n-best size, with default known token and first and second character edit costs.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, Set<String>) - Constructor for class com.aliasi.spell.CompiledSpellChecker
Construct a compiled spell checker based on the specified language model and edit distance, with a null tokenizer factory, the specified set of valid output tokens, with default value for n-best size, known token edit cost and first and second character edit costs.
CompiledTokenizedLM - Class in com.aliasi.lm
A CompiledTokenizedLM implements a tokenized bounded sequence language model.
compileOrSerialize(Object, ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable
Compile the object to the output if it is compilable, else serialize it to the output if it is serializable but not compilable.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.CharLmHmmChunker
Compiles this model to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.CharLmRescoringChunker
Compiles this model to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.RegExChunker
Compiles this regular-expression chunker to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.TrainTokenShapeChunker
Compiles a chunker based on the training data received by this trainer to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.DynamicLMClassifier
Writes a compiled version of this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.KnnClassifier
Compiles this k-nearest-neighbor classifier to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Compile this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.TfIdfClassifierTrainer
Compile this trainer to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Compile this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.AbstractDictionary
Compiles this dictionary to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.DictionaryEntry
Compiles this dictionary entry to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.MapDictionary
Serializes the object to the specified output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.TrieDictionary
Compile the entries in this dictionary to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.hmm.AbstractHmmEstimator
Compiles a copy of this estimated HMM to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.hmm.HmmCharLmEstimator
 
compileTo(ObjectOutput) - Method in class com.aliasi.lm.NGramBoundaryLM
Writes a compiled version of this boundary language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.NGramProcessLM
Writes a compiled version of this process language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.TokenizedLM
Writes a compiled version of this tokenized language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.UniformBoundaryLM
Writes a compiled version of this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.UniformProcessLM
Writes a compiled version of this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.spell.FixedWeightEditDistance
Writes a compiled version of this edit distance to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.spell.TrainSpellChecker
Writes a compiled spell checker to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.BernoulliEstimator
Compiles this Bernoulli estimator to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.LogisticRegression
Compiles this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.MultivariateEstimator
Writes a constant version of this estimator to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.PoissonConstant
Compiles an instance of this constant Poisson distribution to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.PoissonEstimator
Writes a constant Poisson distribution with the same mean as the current value of this Poisson distribution's mean.
compileTo(ObjectOutput) - Method in class com.aliasi.symbol.MapSymbolTable
Deprecated. As of LingPipe 3.1, use objOut.writeObject(this).
compileTo(DataOutputStream) - Method in class com.aliasi.symbol.SymbolTableCompiler
Deprecated. As of LingPipe 2.3, use SymbolTableCompiler.compileTo(ObjectOutput).
compileTo(ObjectOutput) - Method in class com.aliasi.symbol.SymbolTableCompiler
Compiles the symbol table to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.tokenizer.CharacterTokenizerFactory
Deprecated. Use Serializable interface instead.
compileTo(ObjectOutput) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer
Compiles this token categorizer to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenizerFactory
Deprecated. Use the Serializable interface instead.
compileTo(ObjectOutput) - Method in class com.aliasi.tokenizer.NGramTokenizerFactory
Deprecated. Use the Serializable interface instead.
compileTo(ObjectOutput) - Method in class com.aliasi.tokenizer.RegExTokenizerFactory
Deprecated. Use the Serializable interface instead.
compileTo(Compilable, File) - Static method in class com.aliasi.util.AbstractExternalizable
Compiles the specified compilable object to the specified file.
compileTo(ObjectOutput) - Method in interface com.aliasi.util.Compilable
Compile this object to the specified object output.
complete() - Method in class com.aliasi.medline.AuthorList
Returns true if the author list is complete.
complete() - Method in class com.aliasi.medline.DataBankList
Returns true if the list of databank numbers in the citation is complete.
complete(String) - Method in class com.aliasi.spell.AutoCompleter
Returns a set of scored phrases sorted into decreasing order of score.
COMPLETE_YN_ATT - Static variable in class com.aliasi.medline.MedlineCitationSet
The CompleteYN attribute.
COMPLETED_VALUE - Static variable in class com.aliasi.medline.MedlineCitationSet
The Completed value.
CompleteLinkClusterer<E> - Class in com.aliasi.cluster
A CompleteLinkClusterer implements complete link agglomerative clustering.
CompleteLinkClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.CompleteLinkClusterer
Construct a complete link clusterer with the specified distance bound.
CompleteLinkClusterer(Distance<? super E>) - Constructor for class com.aliasi.cluster.CompleteLinkClusterer
Construct a complete link clusterer with no distance bound.
CompositeFilter - Class in com.aliasi.xml
A CompositeFilter is a SAX filter that is composed of several filters through which events are passed.
CompositeFilter(SAXFilterHandler[]) - Constructor for class com.aliasi.xml.CompositeFilter
Construct a composite filter from the specified array of filters.
concatenate(char[], char) - Static method in class com.aliasi.util.Arrays
Returns the array of characters consisting of the members of the first specified array followed by the specified character.
concatenate(String[], String[]) - Static method in class com.aliasi.util.Arrays
Returns a new array of strings containing the elements of the first array of strings specified followed by the elements of the second array of strings specified.
concatenate(Object[]) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, separating with the default separator Strings.DEFAULT_SEPARATOR_STRING.
concatenate(Object[], String) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, separating with the specified string spacer.
concatenate(Object[], int, String) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through the rest of the string, separating with the specified string spacer.
concatenate(Object[], int, int) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through one element before the specified end index, separating with the default spacer Strings.DEFAULT_SEPARATOR_STRING.
concatenate(Object[], int, int, String) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through one element before the specified end index, separating with the specified spacer.
ConditionalClassification - Class in com.aliasi.classify
A ConditionalClassification is a scored classification which estimates conditional probabilities of categories given an input.
ConditionalClassification(String[], double[]) - Constructor for class com.aliasi.classify.ConditionalClassification
Construct a conditional classification with the specified categories and conditional probabilities which sum to one within the default tolerance of 0.01.
ConditionalClassification(String[], double[], double[]) - Constructor for class com.aliasi.classify.ConditionalClassification
Construct a conditional classification with the specified categories, scores and conditional probabilities which sum to one within the default tolerance of 0.01.
ConditionalClassification(String[], double[], double) - Constructor for class com.aliasi.classify.ConditionalClassification
Construct a conditional classification with the specified categories and conditional probabilities whose probabilities sum to one within the specified tolerance.
ConditionalClassification(String[], double[], double[], double) - Constructor for class com.aliasi.classify.ConditionalClassification
Construct a conditional classification with the specified categories and conditional probabilities whose probabilities sum to one within the specified tolerance.
conditionalEntropy(int) - Method in class com.aliasi.classify.ConfusionMatrix
Returns the entropy of the distribution of categories in the response given that the reference category was as specified.
conditionalEntropy() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the conditional entropy of the response distribution against the reference distribution.
conditionalOneVersusAll(String) - Method in class com.aliasi.classify.ClassifierEvaluator
Returns a scored precision-recall evaluation of the classifcation of the specified reference category versus all other categories using the conditional probability scores.
conditionalProbability(int) - Method in class com.aliasi.classify.ConditionalClassification
Returns the conditional probability estimate for the category at the specified rank.
conditionalProbability(String) - Method in class com.aliasi.classify.ConditionalClassification
Returns the conditional probability estimate for the specified category.
confidence(double) - Method in class com.aliasi.classify.ConfusionMatrix
Returns the normal approximation of half of the binomial confidence interval for this confusion matrix for the specified z-score.
confidence95() - Method in class com.aliasi.classify.ConfusionMatrix
Returns half the width of the 95% confidence interval for this confusion matrix.
confidence99() - Method in class com.aliasi.classify.ConfusionMatrix
Returns half the width of the 99% confidence interval for this confusion matrix.
ConfidenceChunker - Interface in com.aliasi.chunk
The ConfidenceChunker interface specifies a method for returning an iterator over chunks in order of confidence.
confidenceEvaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator
Returns the scored precision-recall evaluation derived from a confidence-based chunker.
confidenceEvaluation() - Method in class com.aliasi.hmm.HmmEvaluation
Deprecated. Returns the classifier evaluation derived from the tag-word lattice confidence scoring.
confusionMatrix() - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the confusion matrix of first-best classification result statistics for this evaluator.
ConfusionMatrix - Class in com.aliasi.classify
An instance of ConfusionMatrix represents a quantitative comparison between two classifiers over a fixed set of categories on a number of test cases.
ConfusionMatrix(String[]) - Constructor for class com.aliasi.classify.ConfusionMatrix
Construct a confusion matrix with all zero values from the specified array of categories.
ConfusionMatrix(String[], int[][]) - Constructor for class com.aliasi.classify.ConfusionMatrix
Construct a confusion matrix with the specified set of categories and values.
confusionMatrix() - Method in class com.aliasi.spell.SpellEvaluator
Returns the confusion matrix for the current state of this evaluation.
consistentTokens(String[], String[], TokenizerFactory) - Static method in class com.aliasi.corpus.ChunkHandlerAdapter
Returns true if the specified tokens and whitespaces are consistent with the specified tokenizer factory.
constant(double) - Static method in class com.aliasi.stats.AnnealingSchedule
Return the annealing schedule for the specified constant learning rate.
contains(E) - Method in class com.aliasi.cluster.Dendrogram
Returns true if this dendrogram contains the specified object as a leaf.
containsChar(String, char) - Static method in class com.aliasi.util.Strings
Returns true if the specified string contains an instance of the specified character.
containsDigits(char[]) - Static method in class com.aliasi.util.Strings
Returns true if at least one of the characters in the specified array is a digit.
containsKey(Object) - Method in class com.aliasi.util.SmallObjectToDoubleMap
 
containsLetter(char[]) - Static method in class com.aliasi.util.Strings
Returns true if at least one of the characters in the specified array is a letter.
containsValue(Object) - Method in class com.aliasi.util.SmallObjectToDoubleMap
 
CONTENT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the content attribute.
COORDS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the coords attribute.
copheneticCorrelation(Distance<? super E>) - Method in class com.aliasi.cluster.Dendrogram
Returns the Pearson correlation coefficient between the inter-object distances and the cophenetic distances defined by this dendrogram.
copy(TrieReader, TrieWriter) - Static method in class com.aliasi.lm.BitTrieWriter
Copies the content of the specified trie reader to the specified trie writer.
copy(char[]) - Static method in class com.aliasi.util.Arrays
Return a shallow copy of the specified array that contains the same elements as the specified array.
copy(Reader, Writer) - Static method in class com.aliasi.util.Streams
Copies the content of the reader into the writer.
copy(InputStream, OutputStream) - Static method in class com.aliasi.util.Streams
Copies the content of the input stream into the output stream.
copyFile(File, File) - Static method in class com.aliasi.util.Files
Copies the contents of one file into another.
COPYRIGHT_INFORMATION_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The CopyrightInformation element.
copyrightInformation() - Method in class com.aliasi.medline.Abstract
Returns the copyright information for this abstract.
copyrightInformation() - Method in class com.aliasi.medline.OtherAbstract
Returns the copyright information for this abstract, or the empty (zero length) string if none was provided.
Corpus<H extends Handler> - Class in com.aliasi.corpus
The Corpus abstract class provides a basis for passing training and testing data to data handlers.
Corpus() - Constructor for class com.aliasi.corpus.Corpus
Construct a corpus.
corpus(String, File) - Static method in class com.aliasi.corpus.parsers.Reuters21578Parser
Returns the corpus representation of the Reuters collection, for the specified topic, reading the SGML files from the specified directory.
corpusLog2JointProbability() - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the joint log (base 2) probability of the entire evaluation corpus.
corpusLog2Probability() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns an estimate of the log (base 2) likelihood of the corpus given the point estimates of topic and document multinomials determined from this sample.
correctResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of cases where the response is correct.
correlation(double[], double[]) - Static method in class com.aliasi.stats.Statistics
Returns (Pearson's) correlation coefficient between two specified arrays.
cosine(Vector) - Method in class com.aliasi.matrix.AbstractVector
Returns the cosine of this vector and the specified vector.
cosine(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
 
cosine(Vector) - Method in interface com.aliasi.matrix.Vector
Returns the cosine product of this vector with the specified vector.
CosineDistance - Class in com.aliasi.matrix
The CosineDistance class implements proximity as vector cosine.
CosineDistance() - Constructor for class com.aliasi.matrix.CosineDistance
Construct a cosine proximity.
count(int, int) - Method in class com.aliasi.classify.ConfusionMatrix
Returns the value of the cell in the matrix for the specified reference and response category indices.
count() - Method in class com.aliasi.dict.DictionaryEntry
Returns the count for this dictionary entry.
count(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter
Returns the count for the specified character sequence.
count(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
 
count(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter
Returns the count of the specified sequence of integers.
count(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
 
count(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter
Returns the count in the training corpus for the specified sequence of characters.
count(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
 
countComparator() - Method in class com.aliasi.util.ObjectToCounterMap
Returns a CountComparator that compares objects based on their counts in this object to counter map.
Counter - Class in com.aliasi.util
A reassignable integer usable for counting.
Counter() - Constructor for class com.aliasi.util.Counter
Create a counter with initial count 0.
Counter(int) - Constructor for class com.aliasi.util.Counter
Create a counter with the specified count value.
country() - Method in class com.aliasi.medline.Grant
Return the country for the grant.
country() - Method in class com.aliasi.medline.JournalInfo
Returns the country of publication of the journal, or the empty (zero-length) string if none was provided.
COUNTRY_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Country element.
cramersV() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the value of Cramér's V statistic for this matrix.
create(String[], double[]) - Static method in class com.aliasi.classify.JointClassification
Return a joint classification given the categories and log probabilities.
create(ScoredObject<String>[]) - Static method in class com.aliasi.classify.ScoredClassification
Factory method which returns a scored classification from the array of scored categories.
create(String, String) - Method in class com.aliasi.coref.AbstractMentionFactory
Return a mention based on the specified phrase and entity type.
create(String, String) - Method in interface com.aliasi.coref.MentionFactory
Return a mention based on the specified phrase and entity type.
create() - Method in interface com.aliasi.util.Factory
Return an instance created by this factory.
create() - Static method in class com.aliasi.util.SmallSet
Return an empty small set.
create(F) - Static method in class com.aliasi.util.SmallSet
Return a singleton empty set containing the specified member.
create(F, F) - Static method in class com.aliasi.util.SmallSet
Return a set containing the two specified members.
create(F[]) - Static method in class com.aliasi.util.SmallSet
Return a set consisting of members drawn from the specified array of members.
create(Set<? extends F>) - Static method in class com.aliasi.util.SmallSet
Return a small set containing the members specified in the set argument.
create(F, Set<? extends F>) - Static method in class com.aliasi.util.SmallSet
Return a small set containing the member and set of members specified in the arguments.
create(Set<? extends F>, Set<? extends F>) - Static method in class com.aliasi.util.SmallSet
Return a small set containing all of the members of both specified sets.
create() - Static method in class com.aliasi.util.Tuple
Returns a zero-length tuple.
create(E) - Static method in class com.aliasi.util.Tuple
Returns a tuple of length one containing the specified object.
create(E[]) - Static method in class com.aliasi.util.Tuple
Creates a tuple from the specified array of objects.
create(E, E) - Static method in class com.aliasi.util.Tuple
Returns a new tuple representing a pair of objects.
createAttributes(String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified attribute and value.
createAttributes(String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified pair of attributes.
createAttributes(String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified tripe of attributes and values.
createAttributes(String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified four attributes and values.
createAttributes(String, String, String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified five attributes and values.
createAttributes(String, String, String, String, String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified six attributes and values.
createChunk(int, int) - Static method in class com.aliasi.chunk.ChunkFactory
Return a chunk with the specified start and end positions, with default type and score.
createChunk(int, int, String) - Static method in class com.aliasi.chunk.ChunkFactory
Return a chunk with the specified start and end positions, specified type and default score.
createChunk(int, int, double) - Static method in class com.aliasi.chunk.ChunkFactory
Return a chunk with the specified start and end positions, specified score and default type.
createChunk(int, int, String, double) - Static method in class com.aliasi.chunk.ChunkFactory
Return a chunk with the specified start and end positions, type and score.
createLogProbs(String[], double[]) - Static method in class com.aliasi.classify.ConditionalClassification
Return a conditional classification given the categories and log probabilities.
createNGramBoundary(String[], int) - Static method in class com.aliasi.classify.DynamicLMClassifier
Construct a dynamic classifier over the specified cateogries, using boundary character n-gram models of the specified order.
createNGramProcess(String[], int) - Static method in class com.aliasi.classify.DynamicLMClassifier
Construct a dynamic classifier over the specified categories, using process character n-gram models of the specified order.
createProbs(String[], double[]) - Static method in class com.aliasi.classify.ConditionalClassification
Static factory method for conditional classifications based on the specified categories and linear probability ratios.
createTempFile(String) - Static method in class com.aliasi.util.Files
Deprecated. Use java.io.File.createTempFile(String,String) instead.
createTokenized(String[], TokenizerFactory, int) - Static method in class com.aliasi.classify.DynamicLMClassifier
Construct a dynamic language model classifier over the specified categories using token n-gram language models of the specified order and the specified tokenizer factory for tokenization.
crf() - Method in class com.aliasi.crf.ChainCrfChunker
Returns the underlying CRF for this chunker.
crossEntropy() - Method in class com.aliasi.classify.ConfusionMatrix
The cross-entropy of the response distribution against the reference distribution.
csvToArray(String) - Static method in class com.aliasi.util.Arrays
Converts a string of comma-separated values into an array of strings.
csvToArray2D(String) - Static method in class com.aliasi.util.Arrays
Converts a comma-separated values string to a two-dimensional array of strings.
cumulativeProbability(long, long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the cumulative probability of all outcomes between the specified bounds, inclusive.
cumulativeProbability(long, long) - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the probability that an outcome will fall in the range between the specified lower and upper bounds inclusive.
cumulativeProbabilityGreater(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the cumulative probability of all outcomes greater than or equal to the specified lower bound.
cumulativeProbabilityGreater(long) - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the probability an outcome will be greater than or equal to the specified outcome.
cumulativeProbabilityLess(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the cumulative probability of all outcomes less than or equal to the specified upper bound.
cumulativeProbabilityLess(long) - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the probability an outcome will be less than or equal to the specified outcome.
currentAttributes() - Method in class com.aliasi.xml.ElementStackFilter
Returns the attributes as specified for the current containing element.
currentElement() - Method in class com.aliasi.xml.ElementStackFilter
Returns the qualified name of the current containing element's qualified name.

D

DATA - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the data attribute.
DATA_BANK_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DataBank element.
DATA_BANK_LIST_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DataBankList element.
DATA_BANK_NAME_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DataBankName element.
DataBank - Class in com.aliasi.medline
A DataBank represents a set of molecular sequences registered in a particular database.
dataBankList() - Method in class com.aliasi.medline.Article
Returns an object representing a list of linkages of molecular sequences mentioned in the paper to their accession numbers in a given data bank.
DataBankList - Class in com.aliasi.medline
A DataBankList contains linkages of molecular sequences mentioned in articles to their data bank name and accession numbers.
dataBankName() - Method in class com.aliasi.medline.DataBank
Returns the name of this data bank.
dataBanks() - Method in class com.aliasi.medline.DataBankList
Return the list of data bank linkages for molecular sequences mentioned in this article.
date() - Method in class com.aliasi.medline.ArticleDate
Returns the actual electronic publication date.
DATE_COMPLETED_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DateCompleted element.
DATE_CREATED_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DateCreated element.
DATE_REVISED_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DateRevised element.
dateCompleted() - Method in class com.aliasi.medline.MedlineCitation
Returns the date that the processing of this citation ended or null if it is still in process.
dateCreated() - Method in class com.aliasi.medline.MedlineCitation
Returns the date on which this citation was created.
dateRevised() - Method in class com.aliasi.medline.MedlineCitation
Returns the latest date on which a change was made to this citation as a result of maintenance.
DATES_ASSOCIATED_WITH_NAME_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DatesAssociatedWithName element.
datesAssociatedWithName() - Method in class com.aliasi.medline.Author
Returns a string-based representation of the dates associated with this name.
datesAssociatedWithName() - Method in class com.aliasi.medline.PersonalNameSubject
Returns a string-based representation of the dates associated with this name.
DATETIME - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the datetime attribute.
day() - Method in class com.aliasi.medline.PubDate
Returns the day for this date, or the empty (zero length) string if none was specified.
DAY_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Day element.
DD - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dd.
dd() - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with no attributes.
dd(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attributes.
dd(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attribute and value.
dd(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attributes and values.
dd(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attributes and values.
dd(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attributes and values.
deAccentLatin1(char) - Static method in class com.aliasi.util.Strings
Returns the equivalent de-accented character for characters in the Latin-1 (ISO-8859-1) range (0000-00FF).
deAccentLatin1(CharSequence) - Static method in class com.aliasi.util.Strings
Returns the string constructed from the specified character sequence by deaccenting each of its characters.
debug(String) - Method in class com.aliasi.io.Reporter
Utility method for debug-level reports.
decimalFormat(double, String, int) - Static method in class com.aliasi.util.Strings
Deprecated. Use DecimalFormat directly with a pattern, or use the newer Formatter class or String.format(String,Object[]) utility method instead.
DECLARE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the declare attribute.
decrementSubstrings(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Decrements all of the substrings of the specified character slice by one.
decrementUnigram(char) - Method in class com.aliasi.lm.TrieCharSeqCounter
Decrements the unigram count for the specified character.
decrementUnigram(char, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Decrements the unigram count by the specified amount for the specified character.
DEFAULT_ACCEPT_CATEGORY - Static variable in class com.aliasi.classify.BinaryLMClassifier
The default value of the category for accepting input, "true".
DEFAULT_CHUNK_SCORE - Static variable in class com.aliasi.chunk.ChunkFactory
The default chunk score, Double.NEGATIVE_INFINITY.
DEFAULT_CHUNK_TYPE - Static variable in class com.aliasi.chunk.ChunkFactory
The default chunk type, "CHUNK".
DEFAULT_REJECT_CATEGORY - Static variable in class com.aliasi.classify.BinaryLMClassifier
The default value of the category for rejecting input, "false".
DEFAULT_SEPARATOR_CHAR - Static variable in class com.aliasi.util.Strings
The default separator character, a single space.
DEFAULT_SEPARATOR_STRING - Static variable in class com.aliasi.util.Strings
The default separator string.
DEFAULT_TEST_DIR_NAME - Static variable in class com.aliasi.corpus.DiskCorpus
The name of the default testing directory, "test".
DEFAULT_TRAIN_DIR_NAME - Static variable in class com.aliasi.corpus.DiskCorpus
The name of the default training directory, "train".
DEFER - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the defer attribute.
DEL - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element del.
del() - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with no attributes.
del(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attributes.
del(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attribute and value.
del(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attributes and values.
del(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attributes and values.
del(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attributes and values.
DelegateHandler - Class in com.aliasi.xml
A DelegateHandler may be used with a delegating handler to more efficiently implement nested embeddings.
DelegateHandler(DelegatingHandler) - Constructor for class com.aliasi.xml.DelegateHandler
Construct a delegate handler that coordinates recursive delegation with the specified delegating handler.
DelegatingHandler - Class in com.aliasi.xml
A DelegatingHandler is a SAX filter that routes events to embedded handlers based on their element embedding.
DelegatingHandler(int) - Constructor for class com.aliasi.xml.DelegatingHandler
Construct a delegating handler with up to the specified maximum delegation depth.
DelegatingHandler() - Constructor for class com.aliasi.xml.DelegatingHandler
Construct a delegating handler with delegation depth 512.
delete(String) - Method in interface com.aliasi.medline.MedlineHandler
Delete the citation with the specified PubMed identifier.
DELETE_CITATION_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DeleteCitation element.
deleteCost(String) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch
Returns the cost to delete the specified token.
deleteWeight(char) - Method in class com.aliasi.spell.FixedWeightEditDistance
Returns the constant weight of deleting the specified character.
deleteWeight(char) - Method in class com.aliasi.spell.WeightedEditDistance
Returns the weight of deleting the specified character.
Dendrogram<E> - Class in com.aliasi.cluster
A Dendrogram represents the result of a weighted hierarchical clustering of a set of objects.
dendrogram1() - Method in class com.aliasi.cluster.LinkDendrogram
Returns the first dendrogram in the linked dendrogram.
dendrogram2() - Method in class com.aliasi.cluster.LinkDendrogram
Returns the second dendrogram in the linked dendrogram.
DenseMatrix - Class in com.aliasi.matrix
A DenseMatrix is a matrix implementation suitable for matrices with primarily non-zero values.
DenseMatrix(int, int) - Constructor for class com.aliasi.matrix.DenseMatrix
Construct a dense matrix with the specified positive number of rows and columns.
DenseMatrix(double[][]) - Constructor for class com.aliasi.matrix.DenseMatrix
Construct a dense matrix with the specified values.
DenseVector - Class in com.aliasi.matrix
A DenseVector is a vector implementation suitable for vectors with primarily non-zero values.
DenseVector(int) - Constructor for class com.aliasi.matrix.DenseVector
Construct a dense vector with the specified number of dimensions.
DenseVector(double[]) - Constructor for class com.aliasi.matrix.DenseVector
Construct a dense vector with the specified values.
DenseVector(DenseVector) - Constructor for class com.aliasi.matrix.DenseVector
Constructs a deep copy of the specified vector.
dereference() - Method in class com.aliasi.cluster.Dendrogram
Returns the top-level cluster of which this dendrogram is a member.
descriptor() - Method in class com.aliasi.medline.MeshHeading
Return the descriptor for this heading.
DESCRIPTOR_NAME_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The DescriptorName element.
DFN - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dfn.
dfn() - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with no attributes.
dfn(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attributes.
dfn(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attribute and value.
dfn(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attributes and values.
dfn(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attributes and values.
dfn(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attributes and values.
dictionary() - Method in class com.aliasi.dict.ApproxDictionaryChunker
Returns the trie dictionary underlying this chunker.
Dictionary<C> - Interface in com.aliasi.dict
The Dictionary interface represents a dictionary as a set of entries.
DictionaryEntry<C> - Class in com.aliasi.dict
A DictionaryEntry provides a phrase as a string, an object-based category for the phrase, and a double-valued score.
DictionaryEntry(String, C, int, double) - Constructor for class com.aliasi.dict.DictionaryEntry
Construct a dictionary entry with the specified phrase, category, count and score.
DictionaryEntry(String, C, double) - Constructor for class com.aliasi.dict.DictionaryEntry
Construct a dictionary entry with the specified phrase, category and score, with a count of zero.
DictionaryEntry(String, C, int) - Constructor for class com.aliasi.dict.DictionaryEntry
Construct a dictionary entry with the specified phrase, category and count, with the score set to the count value.
DictionaryEntry(String, C) - Constructor for class com.aliasi.dict.DictionaryEntry
Construct a dictionary entry with the specified phrase and category, with count and score set to 1.
didYouMean(String) - Method in class com.aliasi.spell.CompiledSpellChecker
Returns a first-best hypothesis of the intended message given a received message.
didYouMean(String) - Method in interface com.aliasi.spell.SpellChecker
Returns a first-best hypothesis of the intended message given the received message.
didYouMeanNBest(String) - Method in class com.aliasi.spell.CompiledSpellChecker
Returns an iterator over the n-best spelling corrections for the specified input string.
digamma(double) - Static method in class com.aliasi.util.Math
Returns the value of the digamma function for the specified value.
DIGIT_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer
The digit category.
DIR - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dir.
dir() - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with no attributes.
dir(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attributes.
dir(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attribute and value.
dir(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attributes and values.
dir(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attributes and values.
dir(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attributes and values.
DIR_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the dir attribute.
dirichletLog2Prob(double, double[]) - Static method in class com.aliasi.stats.Statistics
Returns the log (base 2) of the probability of the specified discrete distribution given the specified uniform Dirichlet with concentration parameters equal to the specified value.
dirichletLog2Prob(double[], double[]) - Static method in class com.aliasi.stats.Statistics
Returns the log (base 2) of the probability of the specified discrete distribution given the specified Dirichlet distribution concentration parameters.
DISABLED - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the disabled attribute.
DiscreteDistribution - Interface in com.aliasi.stats
A DiscreteDistribution provides a probability distribution over long integer outcomes.
DiskCorpus<H extends Handler> - Class in com.aliasi.corpus
A DiskCorpus reads data from a specified training and test directory using a specified parser.
DiskCorpus(Parser<H>, File) - Constructor for class com.aliasi.corpus.DiskCorpus
Construct a corpus from the specified parser and data directory.
DiskCorpus(Parser<H>, File, File) - Constructor for class com.aliasi.corpus.DiskCorpus
Construct a corpus from the specified parser and training and test directories.
distance() - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer
Returns the distance function for this hierarchical clusterer.
DISTANCE - Static variable in class com.aliasi.matrix.CosineDistance
A constant for the cosine distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.CosineDistance
Returns one minus the proximity of the vectors.
DISTANCE - Static variable in class com.aliasi.matrix.EuclideanDistance
The Euclidean distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.EuclideanDistance
Returns the Euclidean distance between the specified pair of vectors.
distance(Vector, Vector) - Method in class com.aliasi.matrix.MinkowskiDistance
Returns the Minkowski distance between the specified pair of vectors.
DISTANCE - Static variable in class com.aliasi.matrix.TaxicabDistance
The taxicab distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.TaxicabDistance
Returns the taxicab distance between the specified pair of vectors.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.EditDistance
Returns the edit distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaccardDistance
Returns the Jaccard distance between the specified character sequence.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaroWinklerDistance
Returns the Jaro-Winkler distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.TfIdfDistance
Return the TF/IDF distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.WeightedEditDistance
Returns the weighted edit distance between the specified character sequences.
Distance<E> - Interface in com.aliasi.util
The Distance interface provides a general method for defining distances between two objects.
distance(E, E) - Method in interface com.aliasi.util.Distance
Returns the distance between the specified pair of objects.
distanceThreshold() - Method in class com.aliasi.dict.ApproxDictionaryChunker
Returns the maximum edit distance a string can be from a dictionary entry in order to be returned by this chunker.
DIV - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element div.
div() - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with no attributes.
div(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attributes.
div(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attribute and value.
div(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attributes and values.
div(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attributes and values.
div(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attributes and values.
DL - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dl.
dl() - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with no attributes.
dl(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attributes.
dl(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attribute and value.
dl(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attributes and values.
dl(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attributes and values.
dl(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attributes and values.
docFrequency(String) - Method in class com.aliasi.spell.TfIdfDistance
Returns the number of training documents that contained the specified term.
documentLength(int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the length of the specified document in tokens.
documentTopicCount(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the number of times the specified topic was assigned to the specified document in this sample.
documentTopicPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation
Returns the concentration value of the uniform Dirichlet prior over topic distributions for documents.
documentTopicPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the uniform Dirichlet concentration hyperparameter α for document distributions over topics from which this sample was produced.
documentTopicProb(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the estimate of the probability of the topic being assigned to a word in the specified document given the topic * assignments in this sample.
doNotEditTokens() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns an unmodifiable view of the set of tokens that will never be edited in this compiled spell checker.
dotProduct(Vector) - Method in class com.aliasi.matrix.AbstractVector
Returns the dot product (inner product) of this vector with the specified vector.
dotProduct(Vector) - Method in class com.aliasi.matrix.DenseVector
 
dotProduct(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
 
dotProduct(Vector) - Method in interface com.aliasi.matrix.Vector
Returns the dot product of this vector with the specified vector.
dotProduct(SmallObjectToDoubleMap<E>) - Method in class com.aliasi.util.SmallObjectToDoubleMap
Returns the vector dot product of this map with the specified map, taking the keys to be the dimensions.
DotProductKernel - Class in com.aliasi.matrix
The DotProductKernel is the trivial kernel function computed by taking the dot product of the input vectors.
DotProductKernel() - Constructor for class com.aliasi.matrix.DotProductKernel
Construct a dot-product kernel.
doubleValue() - Method in class com.aliasi.util.Counter
Returns the value of this counter as a double.
DT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dt.
dt() - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with no attributes.
dt(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attributes.
dt(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attribute and value.
dt(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attributes and values.
dt(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attributes and values.
dt(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attributes and values.
DynamicLMClassifier<L extends LanguageModel.Dynamic> - Class in com.aliasi.classify
A DynamicLMClassifier is a language model classifier that accepts training events of categorized character sequences.
DynamicLMClassifier(String[], L[]) - Constructor for class com.aliasi.classify.DynamicLMClassifier
Construct a dynamic language model classifier over the specified categories with specified language models per category and an overall category estimator.

E

E_ID_TYPE_ATT - Static variable in class com.aliasi.medline.MedlineCitationSet
The EIdType attribute.
E_LOCATION_ID_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The ELocationId element.
edgeFeatures(int, int) - Method in class com.aliasi.crf.ChainCrfFeatures
Return the edge features for the specified input position and index of the previous tag.
editDistance() - Method in class com.aliasi.dict.ApproxDictionaryChunker
Returns the weighted edit distance for matching with this chunker.
editDistance() - Method in class com.aliasi.spell.AutoCompleter
Returns the weighted edit distance for this auto-completer.
editDistance() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the weighted edit distance for this compiled spell checker.
EditDistance - Class in com.aliasi.spell
The EditDistance class implements the standard notion of edit distance, with or without transposition.
EditDistance(boolean) - Constructor for class com.aliasi.spell.EditDistance
Construct an edit distance with or without transposition based on the specified flag.
editDistance(CharSequence, CharSequence, boolean) - Static method in class com.aliasi.spell.EditDistance
Returns the edit distance between the character sequences with or without transpositions as specified.
editDistance() - Method in class com.aliasi.spell.TrainSpellChecker
Returns the weighted edit distance (channel model) underlying this spell checker trainer.
eIdType() - Method in class com.aliasi.medline.ELocationId
Returns the type of electronic identifier for this electronic location identifier.
elapsedTimeMillis() - Method in class com.aliasi.util.AbstractCommand
Return the elapsed time since the construction of this command in milliseconds.
ELECTRONIC_PRINT_VALUE - Static variable in class com.aliasi.medline.MedlineCitationSet
The Electronic-Print value for publication model.
ELECTRONIC_PUB_DATE_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The ElectronicPubDate element.
ELECTRONIC_VALUE - Static variable in class com.aliasi.medline.MedlineCitationSet
The Electronic value for publication model.
element() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the highest scoring object in this priority queue, throwing an exception if the queue is empty.
element() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the largest element in this queue according to the comparator, throwing an exception if the queue is empty.
ElementStackFilter - Class in com.aliasi.xml
Provides a SAX filter that maintains a stack of elements visited.
ElementStackFilter(DefaultHandler) - Constructor for class com.aliasi.xml.ElementStackFilter
Construct an element stack filter that delegates events to the specified handler.
ElementStackFilter() - Constructor for class com.aliasi.xml.ElementStackFilter
Construct an element stack filter without a specified handler to which to delegate events.
elementsToStringBuilder(StringBuilder, Collection<?>) - Static method in class com.aliasi.util.Collections
Deprecated. Use sb.append(c.toString()) instead.
ELocationId - Class in com.aliasi.medline
An ELocationId represents the pagination type information for an electronic publication.
ELocationId(String, String, boolean) - Constructor for class com.aliasi.medline.ELocationId
Construct an electronic location identifier with the specified text content, identifer type and validity flag.
eLocationIds() - Method in class com.aliasi.medline.Article
Returns zero or more electronic location identifiers for this article.
em(TradNaiveBayesClassifier, Factory<TradNaiveBayesClassifier>, Corpus<ClassificationHandler<CharSequence, Classification>>, Corpus<TextHandler>, double) - Static method in class com.aliasi.classify.TradNaiveBayesClassifier
Apply the expectation maximization (EM) algorithm to train a traditional naive Bayes classifier using the specified labeled and unabled data, initial classifier and factory for creating subsequent factories.
em(TradNaiveBayesClassifier, Factory<TradNaiveBayesClassifier>, Corpus<ClassificationHandler<CharSequence, Classification>>, Corpus<TextHandler>, double, int, double, Reporter) - Static method in class com.aliasi.classify.TradNaiveBayesClassifier
Apply the expectation maximization (EM) algorithm to train a traditional naive Bayes classifier using the specified labeled and unabled data, initial classifier and factory for creating subsequent factories, maximum number of epochs, minimum improvement per epoch, and reporter to which progress reports are sent.
EM - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element em.
em() - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with no attributes.
em(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attributes.
em(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attribute and value.
em(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attributes and values.
em(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attributes and values.
em(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attributes and values.
emissionCache() - Method in class com.aliasi.hmm.HmmDecoder
Returns the mapping used to cache emission probabilities, or null if not caching.
emissionLm(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator
Returns the language model used for emission probabilities for the specified state.
emissionLog2Cache() - Method in class com.aliasi.hmm.HmmDecoder
Returns the mapping used to cache log (base 2) emission probabilities, or null if not caching.
emitLog2Prob(int, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm
Return the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm
Returns the log (base 2) of the emission estimate.
emitLog2Prob(int, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Return the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator
 
emitProb(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm
Returns an estimate the emission of the specified string by the state with the specified label.
emitProb(int, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm
Return an estimate of the likelihood of the state with the specified identifier to emit the specified string.
emitProb(int, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Return an estimate of the likelihood of the state with the specified identifier to emit the specified string.
emitProb(String, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns an estimate the emission of the specified string by the state with the specified label.
emitProb(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator
Returns the estimate of the probability of the specified string being emitted from the specified state.
empty() - Static method in class com.aliasi.util.Iterators
Returns an iterator that has no elements.
EMPTY_ATTS - Static variable in class com.aliasi.xml.SimpleElementHandler
An implementation of Attributes with no attributes.
EMPTY_CHAR_ARRAY - Static variable in class com.aliasi.util.Arrays
Deprecated. Use Strings.EMPTY_CHAR_ARRAY instead.
EMPTY_CHAR_ARRAY - Static variable in class com.aliasi.util.Strings
The zero-length character array.
EMPTY_INT_ARRAY - Static variable in class com.aliasi.util.Arrays
A length 0 array of integers.
EMPTY_STRING - Static variable in class com.aliasi.util.Strings
The empty string.
EMPTY_STRING_2D_ARRAY - Static variable in class com.aliasi.util.Strings
The zero-length two-dimensional array of strings.
EMPTY_STRING_ARRAY - Static variable in class com.aliasi.util.Arrays
Deprecated. Use Strings.EMPTY_STRING_ARRAY instead.
EMPTY_STRING_ARRAY - Static variable in class com.aliasi.util.Strings
The zero-length string array.
ENCTYPE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the enctype attribute.
end() - Method in interface com.aliasi.chunk.Chunk
Returns the index of one past the last character in this chunk.
end(int) - Method in class com.aliasi.hmm.TagWordLattice
Deprecated. Return the probability of the lattice ending with the specified tag.
END_PAGE_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The EndPage element.
endBoundaryEvaluation() - Method in class com.aliasi.sentences.SentenceEvaluation
Returns a precision/recall evaluation based on the end boundaries in the reference and response cases.
endDocument() - Method in class com.aliasi.xml.GroupCharactersFilter
End the document, delegating the call to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) on any accumulated characters.
endDocument() - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
endDocument() - Method in class com.aliasi.xml.SAXWriter
Flushes the underlying character writers output to the output stream, trapping all exceptions.
endDocument() - Method in class com.aliasi.xml.SAXWriterFilter
Flushes the underlying character writers output to the output stream, trapping all exceptions.
endDocument() - Method in class com.aliasi.xml.WellFormedFilter
Tests that the document has been opened and contains a single top-level element that is closed, and delegates the call to the contained handler.
endElement(String, String, String) - Method in class com.aliasi.xml.DelegatingHandler
Call is delegated to the delegate and may trigger a finish delegate callback.
endElement(String, String, String) - Method in class com.aliasi.xml.ElementStackFilter
End the specified element, popping its qualified name and attributes off the stack, and delegating the SAX event to the contained handler.
endElement(String, String, String) - Method in class com.aliasi.xml.GroupCharactersFilter
Ends the specified element, delegating the SAX event to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) to handle any accumulated characters.
endElement(String, String, String) - Method in class com.aliasi.xml.RemoveElementsFilter
Removes specified elements, passing others to the contained handler.
endElement(String, String, String) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
endElement(String, String, String) - Method in class com.aliasi.xml.SAXWriter
Prints the end element, using the qualified name.
endElement(String, String, String) - Method in class com.aliasi.xml.SAXWriterFilter
Prints the end element, using the qualified name.
endElement(String, String, String) - Method in class com.aliasi.xml.WellFormedFilter
Tests that this end element has a matching start element, and delegates the call to the contained handler.
endLog2Prob(String) - Method in class com.aliasi.hmm.AbstractHmm
Returns the log (base 2) of the end probability for the specified state.
endLog2Prob(int) - Method in class com.aliasi.hmm.AbstractHmm
Returns the log (base 2) of the end probability for the state with the specified identifier.
endLog2Prob(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the log (base 2) of the end probability for the state with the specified identifier.
endLog2Prob(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the log (base 2) of the end probability for the specified state.
endOfStream() - Method in class com.aliasi.io.BitInput
Returns true if all of the available bits have been read or if this stream has been closed.
endPrefixMapping(String) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
endPrefixMapping(String) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
endPrefixMapping(String) - Method in class com.aliasi.xml.SAXWriterFilter
Handles the declaration of a namespace mapping from a specified URI to its identifying prefix.
endProb(String) - Method in class com.aliasi.hmm.AbstractHmm
Returns the end probability for the specified state.
endProb(int) - Method in class com.aliasi.hmm.AbstractHmm
Returns the end probability for the state with the specified identifier.
endProb(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the end probability for the state with the specified identifier.
endProb(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the end probability for the specified state.
endProb(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator
 
endSimpleElement(String) - Method in class com.aliasi.xml.SimpleElementHandler
End an element with a null namespace, using the local name for both local and qualified names.
endSimpleElement(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler
End an element for the specified handler with a null namespace, using the local name for both local and qualified names.
enforceConsistency() - Method in class com.aliasi.chunk.BioTagChunkCodec
Returns true if this codec enforces consistency of the chunkings relative to the tokenizer factory.
EnglishMentionFactory - Class in com.aliasi.coref
A mention factory for English phrases.
EnglishMentionFactory() - Constructor for class com.aliasi.coref.EnglishMentionFactory
Constructs a new English mention factory.
EnglishStopListFilterTokenizer - Class in com.aliasi.tokenizer
Deprecated. Use EnglishStopTokenizerFactory instead.
EnglishStopListFilterTokenizer(Tokenizer) - Constructor for class com.aliasi.tokenizer.EnglishStopListFilterTokenizer
Deprecated. Use EnglishStopTokenizerFactory or ModifyTokenTokenizerFactory.modify(Tokenizer) instead.
EnglishStopTokenizerFactory - Class in com.aliasi.tokenizer
An EnglishStopTokenizerFactory applies an English stop list to a contained base tokenizer factory.
EnglishStopTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.EnglishStopTokenizerFactory
Construct an English stop tokenizer factory with the specified base factory.
entityToCharacter(String) - Static method in class com.aliasi.util.Sgml
Returns the character represented by the specified SGML entity, or null if the entity is undefined.
entityType() - Method in class com.aliasi.coref.AbstractMentionChain
Returns the entity type associated with this mention chain.
entityType() - Method in class com.aliasi.coref.CachedMention
Returns the type of entity recognized for this mention.
entityType() - Method in interface com.aliasi.coref.Mention
Returns the type of entity recognized for this mention.
entityType() - Method in interface com.aliasi.coref.MentionChain
Returns the entity type associated with this mention chain.
EntityTypeMatch - Class in com.aliasi.coref.matchers
Implements a matching function that returns the score specified in the constructor if the mention has the specified entity type.
EntityTypeMatch(int, String) - Constructor for class com.aliasi.coref.matchers.EntityTypeMatch
Construct an instance of an entity type matcher that returns the specified score for a match against a mention of the specified type.
entries() - Method in class com.aliasi.dict.AbstractDictionary
Deprecated. Use AbstractDictionary.entryList() instead.
entries() - Method in interface com.aliasi.dict.Dictionary
Deprecated. Use Dictionary.entryList() instead.
entropy() - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the entropy of this distribution in bits (log 2).
entropy() - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the entropy of this distribution.
entryList() - Method in class com.aliasi.dict.AbstractDictionary
Returns all of the dictionary entries for this dictionary.
entryList() - Method in interface com.aliasi.dict.Dictionary
Returns all of the dictionary entries for this dictionary.
entrySet() - Method in class com.aliasi.util.FastCache
Returns a snapshot of the entries in this map.
entrySet() - Method in class com.aliasi.util.HardFastCache
Returns a snapshot of the entries in this map.
entrySet() - Method in class com.aliasi.util.SmallObjectToDoubleMap
 
epoch() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the epoch in which this sample was generated.
equal(Chunking, Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl
Returns true if the specified chunkings are equal.
equalCharSequence(CharSequence, CharSequence) - Static method in class com.aliasi.util.Strings
Return true if the two character sequences have the same length and the same characters.
equals(Object) - Method in interface com.aliasi.chunk.Chunk
Returns true if the specified object is a chunk that is equal to this chunk.
equals(Object) - Method in class com.aliasi.chunk.ChunkAndCharSeq
Returns true if the specified object is a chunk and character sequence structurally equivalent to this one.
equals(Object) - Method in interface com.aliasi.chunk.Chunking
Returns true if the specified object is a chunking equal to this one.
equals(Object) - Method in class com.aliasi.chunk.ChunkingImpl
 
equals(Object) - Method in class com.aliasi.coref.AbstractMentionChain
Returns true if the specified object is a mention chain that is equal to this mention chain.
equals(MentionChain) - Method in class com.aliasi.coref.AbstractMentionChain
Returns true if the specified mention chain is equal to this mention chain.
equals(Object) - Method in class com.aliasi.dict.DictionaryEntry
Returns true if the specified object is a dictionary object equal to this one.
equals(Object) - Method in class com.aliasi.matrix.AbstractMatrix
Return true if the specified object is a matrix of the same dimensionality with the same values.
equals(Object) - Method in class com.aliasi.matrix.AbstractVector
Returns true if the specified object is a vector with the same dimensionality and values as this vector.
equals(Object) - Method in interface com.aliasi.matrix.Matrix
Returns true if the specified object is a matrix with the same number of rows and columns and the same value in every cell as this matrix.
equals(Object) - Method in class com.aliasi.matrix.SparseFloatVector
Returns true if the specified object is a vector with the same dimensionality and values as this vector.
equals(Object) - Method in interface com.aliasi.matrix.Vector
Returns true if the specified object is a vector that has the same dimensionality and values as this vector.
equals(Object) - Method in class com.aliasi.tag.StringTagging
Returns true if the specified object is a string tagging that's structurally identical to this tagging.
equals(Object) - Method in class com.aliasi.tokenizer.Tokenization
Returns true if the specified object is a tokenization that is equal to this one.
equals(Object[], Object[]) - Static method in class com.aliasi.util.Arrays
Return true if the specified arrays are the same length and contain the same elements.
equals(Object) - Method in class com.aliasi.util.Pair
Returns true if the specified object is a pair that has objects equal to this pair's.
equals(Object) - Method in class com.aliasi.util.ScoredObject
Returns true if the specified object is a scored object with an object equal to this object's and equal scores.
equivalenceEvaluation() - Method in class com.aliasi.cluster.ClusterScore
Returns the precision-recall evaluation corresponding to equalities in the reference and response clusterings.
error(String) - Method in class com.aliasi.io.Reporter
Utility method for error-level reports.
error(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
error(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
escape(String) - Static method in class com.aliasi.util.XML
Returns an XML-escaped version of the specified string.
escape(String, StringBuilder) - Static method in class com.aliasi.util.XML
Write an XML-escaped version of the specified string to the specified string buffer.
escape(char, StringBuilder) - Static method in class com.aliasi.util.XML
Write an XML-escaped version of the specified character to the specified string buffer.
escapeEntity(String, StringBuilder) - Static method in class com.aliasi.util.XML
Write an XML-escaped version of the entity specified by name to the specified string buffer.
estimate(Corpus<ObjectHandler<Tagging<F>>>, ChainCrfFeatureExtractor<F>, boolean, int, boolean, boolean, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.crf.ChainCrf
Return the CRF estimated using stochastic gradient descent with the specified prior from the specified corpus of taggings of type F pruned to the specified minimum feature count, using the specified feature extractor, automatically adding an intercept feature if the flag is true, allow unseen tag transitions as specified, using the specified training parameters for annealing, measuring convergence, and reporting the incremental results to the specified reporter.
estimate(Corpus<ObjectHandler<Chunking>>, TagChunkCodec, TokenizerFactory, ChainCrfFeatureExtractor<String>, boolean, int, boolean, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.crf.ChainCrfChunker
Return the chain CRF-based chunker estimated from the specified corpus, which is converted to a tagging corpus using the specified coder/decoder and tokenizer factory, then passed to the chain CRF estimate method along with the rest of the arguments.
estimate(Vector[], int[], RegressionPrior, AnnealingSchedule, double, int, int, PrintWriter) - Static method in class com.aliasi.stats.LogisticRegression
Deprecated. Use LogisticRegression.estimate(Vector[],int[],RegressionPrior,AnnealingSchedule,Reporter,double,int,int) instead.
estimate(Vector[], int[], RegressionPrior, AnnealingSchedule, Reporter, double, int, int) - Static method in class com.aliasi.stats.LogisticRegression
Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.
EuclideanDistance - Class in com.aliasi.matrix
The EuclideanDistance class implements standard Euclidean distance between vectors.
EuclideanDistance() - Constructor for class com.aliasi.matrix.EuclideanDistance
Construct a new Euclidean distance.
evaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator
Return the first-best chunking evaluation.
evaluation() - Method in class com.aliasi.hmm.HmmEvaluator
Deprecated. 
evaluation() - Method in class com.aliasi.sentences.SentenceEvaluator
Return the evaluation for this evaluator.
ExactDictionaryChunker - Class in com.aliasi.dict
An exact dictionary chunker extracts chunks based on exact matches of tokenized dictionary entries.
ExactDictionaryChunker(Dictionary<String>, TokenizerFactory) - Constructor for class com.aliasi.dict.ExactDictionaryChunker
Construct an exact dictionary chunker from the specified dictionary and tokenizer factory which is case sensitive and returns all matches.
ExactDictionaryChunker(Dictionary<String>, TokenizerFactory, boolean, boolean) - Constructor for class com.aliasi.dict.ExactDictionaryChunker
Construct an exact dictionary chunker from the specified dictionary and tokenizer factory, returning all matches or not as specified.
ExactPhraseMatch - Class in com.aliasi.coref.matchers
Implements a matching function that returns the score specified in the constructor if there is a match between the normal phrases of the mention and one of the mentions in the mention chain.
ExactPhraseMatch(int) - Constructor for class com.aliasi.coref.matchers.ExactPhraseMatch
Construct an instance of an exact phrase matcher that returns the specified score if there is a match.
Exceptions - Class in com.aliasi.util
Static utility methods for handling exceptions.
exponential(double, double) - Static method in class com.aliasi.stats.AnnealingSchedule
Return the exponential annealing schedule with the specified initial learning rate and exponent.
extension(File) - Static method in class com.aliasi.util.Files
Returns the suffix of the file's name, defined as the part of the name after the final period, or null if there is no period in the name.
extensionCount(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter
Returns the sum of the counts of all character sequences one character longer than the specified character slice.
extensionCount(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
 
extensionCount(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter
Returns the sum of the count of all sequences that extend the specified sequence by one integer.
extensionCount(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
 
extensionCount(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter
Returns the sum of the counts of all character sequences one character longer than the specified character sequence.
extensionCount(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
 
extract(List<E>, List<String>) - Method in interface com.aliasi.crf.ChainCrfFeatureExtractor
Return the chain CRF features for the specified list of input tokens and specified list of possible tags.

F

FACTORY - Static variable in class com.aliasi.tokenizer.CharacterTokenizerFactory
Deprecated. Use CharacterTokenizerFactory.INSTANCE instead.
FACTORY - Static variable in class com.aliasi.tokenizer.IndoEuropeanTokenizerFactory
Deprecated. Use IndoEuropeanTokenizerFactory.INSTANCE instead.
Factory<E> - Interface in com.aliasi.util
A Factory provides a generic interface for object creation of a specified type.
FAILURE_LABEL - Static variable in class com.aliasi.stats.BernoulliDistribution
The label for dimension zero: "failure".
falseNegative() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of false negative cases.
falseNegativeEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation
Return the set of chunks and character sequences whose end boundaries are in reference but not the response chunking.
falseNegatives(String) - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the list of false negative cases along with their classifications for items of the specified category.
falseNegatives() - Method in class com.aliasi.cluster.ClusterScore
Returns the set of false negative relations for this scoring.
falseNegativeSet() - Method in class com.aliasi.chunk.ChunkingEvaluation
Returns the set of false negatives.
falsePositive() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of false positive cases.
falsePositiveEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation
Return the set of chunks and character sequences whose end boundaries are in response but not the reference chunking.
falsePositives(String) - Method in class com.aliasi.classify.ClassifierEvaluator
Returns the list of false positive cases along with their classifications for items of the specified category.
falsePositives() - Method in class com.aliasi.cluster.ClusterScore
Returns the set of false positive relations for this scoring.
falsePositiveSet() - Method in class com.aliasi.chunk.ChunkingEvaluation
Returns the set of false positives.
FastCache<K,V> - Class in com.aliasi.util
A FastCache is a map implemented with soft references, optimistic copy-on-write updates, and approximate count-based pruning.
FastCache(int) - Constructor for class com.aliasi.util.FastCache
Constrcut a fast cache of the specified size and default load factor.
FastCache(int, double) - Constructor for class com.aliasi.util.FastCache
Construct a fast cache of the specified size (measured in number of hash buckets) and load factor.
fatal(String) - Method in class com.aliasi.io.Reporter
Utility method for fatal-level reports.
fatalError(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
fatalError(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
featureExtractor() - Method in class com.aliasi.classify.BigFeatureVectorClassifier
 
featureExtractor() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns an immutable view of the feature extractor for this classifier.
featureExtractor() - Method in class com.aliasi.classify.PerceptronClassifier
Returns the feature extractor for this perceptron.
featureExtractor() - Method in class com.aliasi.cluster.KMeansClusterer
Returns the feature extractor for this clusterer.
featureExtractor() - Method in class com.aliasi.crf.ChainCrf
Return the feature extractor for this CRF.
FeatureExtractor<E> - Interface in com.aliasi.util
A FeatureExtractor provides a method of converting generic input objects into feature vectors.
FeatureExtractorFilter<E> - Class in com.aliasi.features
A FeatureExtractorFilter contains a reference to another feature extractor.
FeatureExtractorFilter(FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.FeatureExtractorFilter
Construct a feature extractor filter from the specified feature extractor.
features(E) - Method in class com.aliasi.features.AddFeatureExtractor
 
features(E) - Method in class com.aliasi.features.CacheFeatureExtractor
 
features(E) - Method in class com.aliasi.features.FeatureExtractorFilter
Return the features extracted by the contained feature extractor.
Features - Class in com.aliasi.features
The Features class contains static utility classes for manipulating features.
features(E) - Method in class com.aliasi.features.LengthNormFeatureExtractor
Return a length-normalized feature version of the feature vector returned by the contained vector.
features(E) - Method in class com.aliasi.features.ModifiedFeatureExtractor
Return the modified form of the feature vector produced by the base feature extractor.
features(E) - Method in class com.aliasi.features.ZScoreFeatureExtractor
Return the feature map resulting from converting the feature map produced by the underlying feature extractor to z-scores.
features(CharSequence) - Method in class com.aliasi.tokenizer.TokenFeatureExtractor
Return the feature vector for the specified character sequence.
features(E) - Method in interface com.aliasi.util.FeatureExtractor
Return the feature vector for the specified input.
featureSymbolTable() - Method in class com.aliasi.classify.BigFeatureVectorClassifier
 
featureSymbolTable() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns an unmodifiable view of the symbol table used for features in this classifier.
featureSymbolTable() - Method in class com.aliasi.crf.ChainCrf
Returns an unmodifiable view of the symbol table for features for this CRF.
featureValues(String) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns a mapping from features to their parameter values for the specified category.
FEMALE_GENDER - Static variable in class com.aliasi.coref.EnglishMentionFactory
The gender for females.
FEMALE_HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory
The set of female honorifics.
FIBONACCI_SEQUENCE - Static variable in class com.aliasi.util.Math
An array of the Fibonacci sequence up the maximum value representable as a long integer.
FIELDSET - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element fieldset.
fieldset() - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with no attributes.
fieldset(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attributes.
fieldset(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attribute and value.
fieldset(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attributes and values.
fieldset(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attributes and values.
fieldset(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attributes and values.
file(File, String) - Static method in class com.aliasi.io.Reporters
Return a reporter that writes to the specified file using the specified encoding.
FileExtensionFilter - Class in com.aliasi.io
A file filter that accepts all base files with a suffix with a specified value or one of a set of specified values.
FileExtensionFilter(String[], boolean) - Constructor for class com.aliasi.io.FileExtensionFilter
Create a file filter that accepts files with the specified extensions, optionally accepting directories.
FileExtensionFilter(String, boolean) - Constructor for class com.aliasi.io.FileExtensionFilter
Create a file filter that accepts files with the specified extension, optionally accepting directories.
FileExtensionFilter(String) - Constructor for class com.aliasi.io.FileExtensionFilter
Create a file filter that accepts files with the specified extension and accepts all directories.
FileExtensionFilter(String[]) - Constructor for class com.aliasi.io.FileExtensionFilter
Create a file filter that accepts files with the specified extensions and accepts all directories.
FileLineReader - Class in com.aliasi.io
A FileLineReader instance represents the lines of a file.
FileLineReader(File, String) - Constructor for class com.aliasi.io.FileLineReader
Construct a new file lines iterator from the specified file using the specified character encoding, assuming no compression.
FileLineReader(File, String, boolean) - Constructor for class com.aliasi.io.FileLineReader
Construct a new file lines iterator from the specified file using the specified character encoding, uncompressing gzipped input if the compresison flag is true.
FileNameFilter - Class in com.aliasi.io
An abstract file filter that accepts files based on the filename.
FileNameFilter() - Constructor for class com.aliasi.io.FileNameFilter
Construct a file name filter that accepts directories.
FileNameFilter(boolean) - Constructor for class com.aliasi.io.FileNameFilter
Construct a file name filter that accepts directories as specified.
Files - Class in com.aliasi.util
Static utility methods for processing files.
FILES_ONLY_FILE_FILTER - Static variable in class com.aliasi.util.Files
A file filter that accepts all normal files, as specified by File.isFile().
fileToURLName(File) - Static method in class com.aliasi.util.Files
Deprecated. Instead of Files.fileToURLName(file) use file.toURI().toURL().toString().
filter(String, Number) - Method in class com.aliasi.features.BoundedFeatureExtractor
Return the bounded value corresponding to the specified value.
filter(String, Number) - Method in class com.aliasi.features.KnownFeatureExtractor
Returns the value if the feature is in the known feature set and null otherwise.
filter(String, Number) - Method in class com.aliasi.features.ModifiedFeatureExtractor
Return the value for the specified original feature and value, or null to remove the feature altogether.
filter(String, Number) - Method in class com.aliasi.features.ZScoreFeatureExtractor
Deprecated. Use ZScoreFeatureExtractor.zScore(String,double) instead; this method no longer overrides the the method of the same name in ModifiedFeatureExtractor because this class no longer overrides ModifiedFeatureExtractor.
filter(String) - Method in class com.aliasi.tokenizer.LowerCaseFilterTokenizer
Deprecated. Returns the next token from the contained tokenizer, converted to lower case.
filter(String) - Method in class com.aliasi.tokenizer.PorterStemmerFilterTokenizer
Deprecated. Returns the stemmed form of the specified token.
filter(String) - Method in class com.aliasi.tokenizer.SoundexFilterTokenizer
Deprecated. Returns the Soundex equivalent of the specified token.
filter(String) - Method in class com.aliasi.tokenizer.TokenFilterTokenizer
Deprecated. Returns a filtered version of the specified token.
FilterComparator<E> - Class in com.aliasi.util
Deprecated. Build your own from scratch, this is a very simple filter.
FilterComparator(Comparator<? super E>) - Constructor for class com.aliasi.util.FilterComparator
Deprecated. Construct a filter comparator containing the specified comparator and delegating comparison to it.
filteredCharacters(char[], int, int) - Method in class com.aliasi.sentences.SentenceAnnotateFilter
Performs sentence-boundary annotation of the specified characters.
filteredCharacters(char[], int, int) - Method in class com.aliasi.xml.TextContentFilter
Handle filtered character content.
filterElement(String) - Method in class com.aliasi.xml.TextContentFilter
Filter the text content of elements with the specified qualified name.
FilterTokenizer - Class in com.aliasi.tokenizer
Deprecated. Use ModifiedTokenizerFactory instead.
FilterTokenizer(Tokenizer) - Constructor for class com.aliasi.tokenizer.FilterTokenizer
Deprecated. Construct a filter tokenizer that contains the specified tokenizer.
finishDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegateHandler
This method is called when this handler has finished delegating the specified element to the specified handler.
finishDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegatingHandler
This method will be called whenever the close tag for the specified element is found.
finite(String, double) - Static method in class com.aliasi.util.Exceptions
Throws an illegal argument exception if the specified value is not finite.
finiteNonNegative(String, double) - Static method in class com.aliasi.util.Exceptions
Throws an illegal argument exception if the specified value is not finite and non-negative, using the specified variable name in the report.
first() - Method in class com.aliasi.util.BoundedPriorityQueue
Deprecated. Use BoundedPriorityQueue.remove() instead.
first() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the largest element in the queue.
firstBest(String[]) - Method in class com.aliasi.hmm.HmmDecoder
Deprecated. Use HmmDecoder.tag(List) instead.
firstBestEvaluation() - Method in class com.aliasi.hmm.HmmEvaluation
Deprecated. Returns the classifier evaluation derived from the first-best hypotheses.
firstCharEditCost() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the cost penalty for editing the first character in a token.
fit(String, int) - Static method in class com.aliasi.util.Strings
Deprecated. Use java.util.Formatter instead.
FixedWeightEditDistance - Class in com.aliasi.spell
A FixedWeightEditDistance sets constant weights for the edit operations for weighted edit distance.
FixedWeightEditDistance(double, double, double, double, double) - Constructor for class com.aliasi.spell.FixedWeightEditDistance
Construct a weighted edit distance with the specified constant weights for edits.
FixedWeightEditDistance() - Constructor for class com.aliasi.spell.FixedWeightEditDistance
Constructs an edit distance where the match weight is zero and all other weights are positive infinity.
floatValue() - Method in class com.aliasi.util.Counter
Returns the value of this counter as a float.
flush() - Method in class com.aliasi.io.BitOutput
Flushes writes to the underlying output stream.
fMeasure() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the F1 measure.
fMeasure(double) - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the Fβ value for the specified β.
fMeasure(double, double, double) - Static method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the Fβ measure for a specified β, recall and precision values.
fold() - Method in class com.aliasi.classify.XValidatingClassificationCorpus
Returns the current fold.
fold() - Method in class com.aliasi.corpus.XValidatingObjectCorpus
Returns the current fold.
FONT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element font.
font() - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with no attributes.
font(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attributes.
font(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attribute and value.
font(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attributes and values.
font(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attributes and values.
font(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attributes and values.
FOR - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the for attribute.
forceFinalStop() - Method in class com.aliasi.sentences.HeuristicSentenceModel
Returns true if this model treats any input-final token as a stop.
FORE_NAME_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The ForeName element.
foreName() - Method in class com.aliasi.medline.Name
Returns the first name.
FORM - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element form.
form() - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with no attributes.
form(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attributes.
form(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attribute and value.
form(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attributes and values.
form(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attributes and values.
form(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attributes and values.
forward(int, int) - Method in class com.aliasi.hmm.TagWordLattice
Deprecated. Returns the forward probability up to the token of the specified index and for the tag of the specified identifier.
forwardBackward(int, int) - Method in class com.aliasi.hmm.TagWordLattice
Deprecated. Returns the product of the forward and backward probabilities for the token with the specified index and tag with the specified identifier.
ForwardBackwardTagLattice<E> - Class in com.aliasi.crf
The ForwardBackwardTagLattice provides an implementation of a tag lattice based on forward, backward, transition and normalizing values.
ForwardBackwardTagLattice(List<E>, List<String>, double[][], double[][], double[][][], double) - Constructor for class com.aliasi.crf.ForwardBackwardTagLattice
Construct a log tag lattice from the specified list of tokens, list of tags in order of symbol identifier along with log forward, backward, transition and normalizing values on a log probability scale.
fowlkesMallows() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Return the Fowlkes-Mallows score.
FRAME - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element frame.
frame() - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with no attributes.
frame(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attributes.
frame(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attribute and value.
frame(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attributes and values.
frame(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attributes and values.
frame(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attributes and values.
FRAME_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the frame attribute.
FRAMESET - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element frameset.
frameset() - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with no attributes.
frameset(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attributes.
frameset(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attribute and value.
frameset(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attributes and values.
frameset(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attributes and values.
frameset(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attributes and values.
frequentTerms(int, int) - Method in class com.aliasi.lm.TokenizedLM
Deprecated. Use TokenizedLM.frequentTermSet(int,int) instead.
frequentTermSet(int, int) - Method in class com.aliasi.lm.TokenizedLM
Returns the most frequent n-gram terms in the training data up to the specified maximum number.
fullName() - Method in class com.aliasi.medline.Name
Returns a formatted version of this name without field names.
functionArgs(String, Object[]) - Static method in class com.aliasi.util.Strings
Return a string representation of a function applied to its arguments.
functionArgsList(Object[]) - Static method in class com.aliasi.util.Strings
Returns a string representation of the specified array as a function's argument list.

G

gaussian(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Gaussian prior with the specified prior variance and indication of whether the intercept is given a noninformative prior.
gaussian(double[]) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Gaussian prior with the specified priors for each dimension.
GaussianRadialBasisKernel - Class in com.aliasi.matrix
A GaussianRadialBasisKernel provides a kernel based on a Gaussian radial basis function with a fixed variance parameter.
GaussianRadialBasisKernel(double) - Constructor for class com.aliasi.matrix.GaussianRadialBasisKernel
Construct a Gaussian radial basis kernel with the specified radius of influence.
gender() - Method in class com.aliasi.coref.AbstractMentionChain
Returns the gender of this mention chain.
gender(String) - Method in class com.aliasi.coref.AbstractMentionFactory
Returns a string rerpesenting the gender entities with the specified entity type.
gender() - Method in class com.aliasi.coref.CachedMention
Returns a string representing the gender of this mention.
gender(String) - Method in class com.aliasi.coref.EnglishMentionFactory
Returns a string rerpesenting the gender entities with the specified entity type.
gender() - Method in interface com.aliasi.coref.Mention
Returns a string representing the gender of this mention.
gender() - Method in interface com.aliasi.coref.MentionChain
Returns the gender for this mention chain.
GenderKiller - Class in com.aliasi.coref.matchers
Implements a killing function that defeats a match of a mention against a mention chain with an incompatible gender.
GenderKiller() - Constructor for class com.aliasi.coref.matchers.GenderKiller
Construct a new gender killer.
GENE_CHUNK_TYPE - Static variable in class com.aliasi.corpus.parsers.GeneTagChunkParser
The type assigned to the chunks extracted by this parser, namely "GENE".
GENE_SYMBOL_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The GeneSymbol element.
GENE_TYPE - Static variable in class com.aliasi.corpus.parsers.GeneTagParser
The type of gene chunks, namely "GENE".
GENERAL_NOTE_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The GeneralNote element.
GeneralNote - Class in com.aliasi.medline
A GeneralNote represents supplemental or descriptive information related to the record.
generalNotes() - Method in class com.aliasi.medline.MedlineCitation
Returns supplemental or descriptive information for this citation that does not fit elsewhere.
geneSymbols() - Method in class com.aliasi.medline.MedlineCitation
Return an array of the gene symbols for this citation.
GeneTagChunkParser - Class in com.aliasi.corpus.parsers
The GeneTagChunkParser class is designed to parse the offset-annotated first-best GeneTag named entity corpus into a chunk-based representation.
GeneTagChunkParser(File) - Constructor for class com.aliasi.corpus.parsers.GeneTagChunkParser
Construct a GeneTag chunk parser with the specified gold standard file and no specified handler.
GeneTagChunkParser(File, ObjectHandler<Chunking>) - Constructor for class com.aliasi.corpus.parsers.GeneTagChunkParser
Construct a GeneTag chunk parser with the specified gold standard file and the specified chunk handler.
GeneTagParser - Class in com.aliasi.corpus.parsers
The GeneTagParser class provides a tag parser for the GeneTag named-entity corpus.
GeneTagParser() - Constructor for class com.aliasi.corpus.parsers.GeneTagParser
Construct a GeneTag corpus parser with no handler specified.
GeneTagParser(TagHandler) - Constructor for class com.aliasi.corpus.parsers.GeneTagParser
Construct a GeneTag corpus parser with the specified handler.
GENIA_ABSTRACT_ELT - Static variable in class com.aliasi.corpus.parsers.GeniaSentenceParser
The tag used for abstract elements in GENIA, namely abstract.
GENIA_ENTITY_ELT - Static variable in class com.aliasi.corpus.parsers.GeniaEntityChunkParser
 
GENIA_ENTITY_TYPE_ATT - Static variable in class com.aliasi.corpus.parsers.GeniaEntityChunkParser
 
GENIA_SENTENCE_ELT - Static variable in class com.aliasi.corpus.parsers.GeniaEntityChunkParser
The tag used for sentence elements in GENIA, namely sentence.
GENIA_SENTENCE_ELT - Static variable in class com.aliasi.corpus.parsers.GeniaSentenceParser
The tag used for sentence elements in GENIA, namely sentence.
GeniaEntityChunkParser - Class in com.aliasi.corpus.parsers
A GeniaEntityChunkParser provides an entity parser for the XML-formatted GENIA entity corpus.
GeniaEntityChunkParser() - Constructor for class com.aliasi.corpus.parsers.GeniaEntityChunkParser
Construct a GENIA entity chunk parser with no designated chunk handler.
GeniaEntityChunkParser(ObjectHandler<Chunking>) - Constructor for class com.aliasi.corpus.parsers.GeniaEntityChunkParser
Construct a GENIA entity chunk parser with the specified chunk handler.
GeniaPosParser - Class in com.aliasi.corpus.parsers
The GeniaPosParser extracts the part-of-speech (POS) tags from the GENIA text POS corpus and sends them to the specified tag handler.
GeniaPosParser() - Constructor for class com.aliasi.corpus.parsers.GeniaPosParser
Construct a GENIA part-of-speech parser with no handler specified.
GeniaPosParser(TagHandler) - Constructor for class com.aliasi.corpus.parsers.GeniaPosParser
Construct a GENIA part-of-speech parser with the specified tag handler.
GeniaSentenceParser - Class in com.aliasi.corpus.parsers
A GeniaSentenceParser provides a chunk parser for the XML version of the GENIA corpus.
GeniaSentenceParser() - Constructor for class com.aliasi.corpus.parsers.GeniaSentenceParser
Construct a GENIA sentence chunk parser with no designated chunk handler.
GeniaSentenceParser(ObjectHandler<Chunking>) - Constructor for class com.aliasi.corpus.parsers.GeniaSentenceParser
Construct a GENIA sentence chunk parser with the specified chunk handler.
get(Object) - Method in class com.aliasi.util.FastCache
Returns the value of the specified key or null if there is no value attached.
get(Object) - Method in class com.aliasi.util.HardFastCache
Returns the value of the specified key or null if there is no value attached.
get(Object) - Method in class com.aliasi.util.SmallObjectToDoubleMap
 
get(int) - Method in class com.aliasi.util.Tuple
Returns the object at the specified index in the tuple.
getArgument(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the command-line argument with the specified key, or the value of the key in the default properties, or null if it does not exist.
getArgumentCreatableFile(String) - Method in class com.aliasi.util.AbstractCommand
Returns the model file specified by the command line after guaranteeing that the file can be created.
getArgumentDirectory(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a directory.
getArgumentDouble(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a double value.
getArgumentExistingNormalFile(String) - Method in class com.aliasi.util.AbstractCommand
Returns the existing normal file named by the value of the specified key.
getArgumentFile(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a file.
getArgumentInt(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to an integer value.
getArgumentLong(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a long value.
getArguments() - Method in class com.aliasi.util.AbstractCommand
Returns the complete list of command-line parameters for this abstract command.
getArray() - Method in class com.aliasi.util.CommaSeparatedValues
Returns the underlying array for this comma-separated values object.
getAttributesStack() - Method in class com.aliasi.xml.ElementStackFilter
Returns an unmodifiable view of the stack of attributes associated with the stack of elements.
getBareArgument(int) - Method in class com.aliasi.util.AbstractCommand
Returns the specified bare argument.
getCharEncoding() - Method in class com.aliasi.corpus.DiskCorpus
Returns the current character encoding, or null if none has been specified.
getChunkHandler() - Method in class com.aliasi.corpus.parsers.GeneTagChunkParser
Deprecated. Use generic Parser.getHandler() instead.
getChunkHandler() - Method in class com.aliasi.corpus.parsers.GeniaEntityChunkParser
Deprecated. Use generic Parser.getHandler() instead.
getChunkHandler() - Method in class com.aliasi.corpus.parsers.GeniaSentenceParser
Deprecated. Use generic Parser.getHandler() instead.
getCount(long) - Method in class com.aliasi.stats.MultivariateEstimator
Returns the count in this estimator for the specified outcome.
getCount(String) - Method in class com.aliasi.stats.MultivariateEstimator
Returns the count for the specified outcome.
getCount(E) - Method in class com.aliasi.util.ObjectToCounterMap
Returns the current count value for the specified key.
getCSV(String) - Method in class com.aliasi.util.AbstractCommand
Return the array of string values specified by the value of the specified key as a comma-separated values list, as defined in Arrays.csvToArray(String).
getDecoder() - Method in class com.aliasi.chunk.HmmChunker
Returns the underlying hidden Markov model decoder for this chunker.
getDefaultJavaCharset() - Static method in class com.aliasi.util.Streams
Returns Java's canonical name of the default character set for the system's current default locale.
getDelegate(String) - Method in class com.aliasi.xml.DelegatingHandler
Returns the delegate for the specified qualified element name.
getElementStack() - Method in class com.aliasi.xml.ElementStackFilter
Returns an unmodifiable view of the stack of qualified names of elements.
getExistingArgument(String) - Method in class com.aliasi.util.AbstractCommand
Returns the same value as AbstractCommand.getArgument(String), but throws an exception if the argument does not exist.
getFilteredComparator() - Method in class com.aliasi.util.FilterComparator
Deprecated. Returns the comparator being filtered, as provided to the constructor.
getFirst(List<? extends E>) - Static method in class com.aliasi.util.Collections
Deprecated. Use l.get(0) instead.
getFirst(Set<? extends E>) - Static method in class com.aliasi.util.Collections
Returns the first member of the specified set.
getHandler() - Method in class com.aliasi.corpus.Parser
Returns the current content handler.
getHmm() - Method in class com.aliasi.hmm.HmmDecoder
Returns the hidden Markov model underlying this decoder.
getHmmEstimator() - Method in class com.aliasi.chunk.CharLmHmmChunker
Returns the underlying hidden Markov model estimator for this chunker estimator.
getIndex(String) - Method in class com.aliasi.classify.ConfusionMatrix
Return the index of the specified category in the list of categories, or -1 if it is not a category for this confusion matrix.
getLambdaFactor() - Method in class com.aliasi.lm.NGramProcessLM
Returns the current setting of the interpolation ratio hyperparameter.
getLastCaseReport() - Method in class com.aliasi.spell.SpellEvaluator
Returns a string-based representation of the last test case.
getLevel() - Method in class com.aliasi.io.Reporter
Return the log level for this reporter.
getMaxDistance() - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer
Returns the maximum distance for clusters in a dendrogram.
getObject() - Method in class com.aliasi.util.ScoredObject
Returns the object attached to this scored object.
getOrAddSymbol(String) - Method in class com.aliasi.symbol.MapSymbolTable
Returns the identifier for the specified symbol, adding it to the symbol table if necessary.
getOrAddSymbol(String) - Method in interface com.aliasi.symbol.SymbolTable
Returns the identifier for the specified symbol.
getOrAddSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler
Throws an unsupported operation exception.
getOrAddSymbolInteger(String) - Method in class com.aliasi.symbol.MapSymbolTable
Returns the integer identifier for the specified symbol, adding it to the symbol table if necessary.
getOrCreateArgumentDirectory(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a directory.
getProcessLM() - Method in class com.aliasi.lm.NGramBoundaryLM
Returns the underlying n-gram process language model for this boundary language model.
getSet(K) - Method in class com.aliasi.util.ObjectToSet
Returns the set of values for the specified key, or the empty set if there have been none added.
getSystemId() - Method in class com.aliasi.corpus.DiskCorpus
Return the system identifier for this corpus or null if none has been specified.
getTagHandler() - Method in class com.aliasi.corpus.parsers.GeniaPosParser
Deprecated. Use generic Parser.getHandler() instead.
getTagHandler() - Method in class com.aliasi.corpus.parsers.RegexLineTagParser
Deprecated. Use generic Parser.getHandler().
getText() - Method in class com.aliasi.xml.TextAccumulatorHandler
Returns the text thus far accumulated.
getTextHandler() - Method in class com.aliasi.corpus.parsers.MedlineTextParser
Deprecated. Use generic Parser.getHandler() instead.
getTokenizerFactory() - Method in class com.aliasi.chunk.CharLmHmmChunker
Return the tokenizer factory for this chunker.
getTokenizerFactory() - Method in class com.aliasi.chunk.HmmChunker
Returns the underlying tokenizer factory for this chunker.
getValue(E) - Method in class com.aliasi.util.ObjectToDoubleMap
Returns the value of the specified key in the map.
getValue(E) - Method in class com.aliasi.util.SmallObjectToDoubleMap
Returns the value of the specified key as a primitive double value.
getXMLHandler() - Method in class com.aliasi.corpus.parsers.GeniaEntityChunkParser
Returns the embedded XML handler.
getXMLHandler() - Method in class com.aliasi.corpus.parsers.GeniaSentenceParser
Returns the embedded XML handler.
getXMLHandler() - Method in class com.aliasi.corpus.parsers.MedlineTextParser
Returns the XML handler for this text parser.
getXMLHandler() - Method in class com.aliasi.corpus.parsers.Muc6ChunkParser
 
getXMLHandler() - Method in class com.aliasi.corpus.XMLParser
Return the default handler for SAX events.
getXMLHandler() - Method in class com.aliasi.medline.MedlineParser
 
gibbsSample(int[][], short, double, double, Random) - Static method in class com.aliasi.cluster.LatentDirichletAllocation
Return an iterator over Gibbs samples for the specified document-word corpus, number of topics, priors and randomizer.
gibbsSampler(int[][], short, double, double, int, int, int, Random, ObjectHandler<LatentDirichletAllocation.GibbsSample>) - Static method in class com.aliasi.cluster.LatentDirichletAllocation
Run Gibbs sampling for the specified multinomial data, number of topics, priors, search parameters, randomization and callback sample handler.
GigawordTextParser - Class in com.aliasi.corpus.parsers
A text parser for the Linguistic Data Consortium's English Gigaword Corpus.
GigawordTextParser() - Constructor for class com.aliasi.corpus.parsers.GigawordTextParser
Construct a Gigaword text parser with a null handler.
GigawordTextParser(TextHandler) - Constructor for class com.aliasi.corpus.parsers.GigawordTextParser
Construct a Gigaword text parser with the specified text handler as the current handler.
GOLDEN_RATIO - Static variable in class com.aliasi.util.Math
The value of the golden ratio.
gradient(double, int) - Method in class com.aliasi.stats.RegressionPrior
Returns the contribution to the gradient of the error function of the specified parameter value for the specified dimension.
Grant - Class in com.aliasi.medline
A Grant represents a particular instance of a grant.
GRANT_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The Grant element.
GRANT_ID_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The GrantID element.
GRANT_LIST_ELT - Static variable in class com.aliasi.medline.MedlineCitationSet
The GrantList element.
grantID() - Method in class com.aliasi.medline.Grant
Returns the grant identifier for this grant, or the empty (zero length) string if none was provided.
grantList() - Method in class com.aliasi.medline.Article
Returns the list of agencies and grant identifiers sponsoring the work reporting in this article.
GrantList - Class in com.aliasi.medline
A GrantList provides information about the grants that funded the work repored in the article.
grants() - Method in class com.aliasi.medline.GrantList
Returns the list of grants for this grant list.
GroupCharactersFilter - Class in com.aliasi.xml
Provides a SAX filter that groups sequential calls to GroupCharactersFilter.characters(char[],int,int) into a single call with all of the content concatenated.
GroupCharactersFilter(DefaultHandler) - Constructor for class com.aliasi.xml.GroupCharactersFilter
Construct a character grouping filter that delegates events to the specified handler.
GroupCharactersFilter(DefaultHandler, boolean) - Constructor for class com.aliasi.xml.GroupCharactersFilter
Construct a character grouping filter without a specified handler to which to delegate events.

H

H1 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h1.
h1() - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with no attributes.
h1(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attributes.
h1(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attribute and value.
h1(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attributes and values.
h1(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attributes and values.
h1(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attributes and values.
H2 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h2.
h2() - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with no attributes.
h2(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attributes.
h2(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attribute and value.
h2(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attributes and values.
h2(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attributes and values.
h2(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attributes and values.
H3 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h3.
h3() - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with no attributes.
h3(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attributes.
h3(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attribute and value.
h3(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attributes and values.
h3(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attributes and values.
h3(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attributes and values.
H4 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h4.
h4() - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with no attributes.
h4(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attributes.
h4(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attribute and value.
h4(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attributes and values.
h4(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attributes and values.
h4(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attributes and values.
H5 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h5.
h5() - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with no attributes.
h5(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attributes.
h5(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attribute and value.
h5(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attributes and values.
h5(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attributes and values.
h5(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attributes and values.
H6 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h6.
h6() - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with no attributes.
h6(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attributes.
h6(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attribute and value.
h6(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attributes and values.
h6(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attributes and values.
h6(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attributes and values.
handle(Chunking) - Method in class com.aliasi.chunk.CharLmHmmChunker
Handle the specified chunking by tokenizing it, assigning tags and training the underlying hidden Markov model.
handle(String[], String[], String[]) - Method in class com.aliasi.chunk.CharLmHmmChunker
Handle the specified tokens, whitespaces and tags by using them (after conversion) to train the underlying hidden Markov model.
handle(Chunking) - Method