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A

a() - Method in class com.aliasi.util.Pair
Return the first value of the pair.
A - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element a.
a() - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with no attributes.
a(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attributes.
a(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attribute and value.
a(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attributes and values.
a(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attributes and values.
a(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an a element with the specified attributes and values.
ABBR - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element abbr.
abbr() - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with no attributes.
abbr(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attributes.
abbr(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attribute and value.
abbr(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attributes and values.
abbr(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attributes and values.
abbr(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an abbr element with the specified attributes and values.
ABBR_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the abbr attribute.
AbstractCharLmRescoringChunker<B extends NBestChunker,O extends LanguageModel.Process,C extends LanguageModel.Sequence> - Class in com.aliasi.chunk
An AbstractCharLmRescoringChunker provides the basic character language-model rescoring model used by the trainable CharLmRescoringChunker and its compiled version.
AbstractCharLmRescoringChunker(B, int, O, Map<String, Character>, Map<String, C>) - Constructor for class com.aliasi.chunk.AbstractCharLmRescoringChunker
Construct a rescoring chunker based on the specified underlying chunker, with the specified number of underlying chunkings rescored, based on the models and type encodings provided in the last three arguments.
AbstractCommand - Class in com.aliasi.util
A CommandLineArguments object represents a the command-line arguments.
AbstractCommand(String[]) - Constructor for class com.aliasi.util.AbstractCommand
Constructs a command-line arguments object from the specified arguments list using no default values.
AbstractCommand(String[], Properties) - Constructor for class com.aliasi.util.AbstractCommand
Constructs a command-line arguments object from the specified arguments using the specified properties as default values.
AbstractDictionary<C> - Class in com.aliasi.dict
An AbstractDictionary is a dictionary with convenience implementations of most methods.
AbstractDictionary() - Constructor for class com.aliasi.dict.AbstractDictionary
Construct an abstract dictionary.
AbstractDiscreteDistribution - Class in com.aliasi.stats
An AbstractDiscreteDistribution provides a default abstract implementation of discrete distributions.
AbstractDiscreteDistribution() - Constructor for class com.aliasi.stats.AbstractDiscreteDistribution
Construct an abstract discrete distribution.
AbstractExternalizable - Class in com.aliasi.util
The AbstractExternalizer is an adapter for read resolved externalizables.
AbstractExternalizable() - Constructor for class com.aliasi.util.AbstractExternalizable
Construct an abstract externalizable.
AbstractHierarchicalClusterer<E> - Class in com.aliasi.cluster
An AbstractHierachicalClusterer provides an adapter for clustering for hierarchical clusterers.
AbstractHierarchicalClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.AbstractHierarchicalClusterer
Construct an abstract hierarchical clusterer with the specified maximum distance.
AbstractHmm - Class in com.aliasi.hmm
An AbstractHmm is an abstract implementation of a hidden Markov model which manages a symbol table and defines the basic methods in terms of the symbolic linear probability methods.
AbstractHmm(SymbolTable) - Constructor for class com.aliasi.hmm.AbstractHmm
Construct an HMM with the specified symbol table.
AbstractHmmEstimator - Class in com.aliasi.hmm
An HmmEstimator may be used to train a hidden Markov model (HMM).
AbstractHmmEstimator(SymbolTable) - Constructor for class com.aliasi.hmm.AbstractHmmEstimator
Construct an HMM estimator with the specified tag symbol table.
AbstractMatrix - Class in com.aliasi.matrix
An AbstractMatrix implements most of a matrix's functionality in terms of methods for accessing numbers of rows and columns and values.
AbstractMatrix() - Constructor for class com.aliasi.matrix.AbstractMatrix
Construct an abstract matrix.
AbstractMentionChain - Class in com.aliasi.coref
An abstract implementation of a mention chain in terms of matching and killing functions.
AbstractMentionChain(Mention, int, int) - Constructor for class com.aliasi.coref.AbstractMentionChain
 
AbstractMentionFactory - Class in com.aliasi.coref
The AbstractMentionFactory class implements the mention factory interface using linguistically-motivated abstract methods.
AbstractMentionFactory(TokenizerFactory) - Constructor for class com.aliasi.coref.AbstractMentionFactory
Construct an abstract mention factory with the specified tokenizer factory.
AbstractSentenceModel - Class in com.aliasi.sentences
An AbstractSentenceModel implements a sentence model in terms of the method that adds indices to the collection.
AbstractSentenceModel() - Constructor for class com.aliasi.sentences.AbstractSentenceModel
Construct an abstract sentence model.
AbstractVector - Class in com.aliasi.matrix
An AbstractVector implements most of a vector's functionality in terms of methods for dimensionality and values.
AbstractVector() - Constructor for class com.aliasi.matrix.AbstractVector
Construct an abstract vector.
accept(String) - Method in class com.aliasi.io.FileExtensionFilter
Returns true if the specified file name has an acceptable suffix as specified in the constructor.
accept(File) - Method in class com.aliasi.io.FileExtensionFilter
Return true if the specified file has an an acceptable suffix as specified in the constructor.
accept(E) - Method in class com.aliasi.util.Iterators.Filter
Returns true for objects returned by the contained iterator that should be returned by this iterator.
ACCEPT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the accept attribute.
ACCEPT_CHARSET - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the accept-charset attribute.
acceptCategory() - Method in class com.aliasi.classify.BinaryLMClassifier
Returns the category assigned to matching/accepted cases.
ACCESSKEY - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the accesskey attribute.
accuracy() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the sample accuracy of the responses.
accuracyDeviation() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the standard deviation of the accuracy.
ACRONYM - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element acronym.
acronym() - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with no attributes.
acronym(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attributes.
acronym(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attribute and value.
acronym(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attributes and values.
acronym(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attributes and values.
acronym(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an acronym element with the specified attributes and values.
ACTION - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the action attribute.
add(Chunk) - Method in class com.aliasi.chunk.ChunkingImpl
Add a chunk this this chunking.
add(Mention, int) - Method in class com.aliasi.coref.AbstractMentionChain
Adds the specified mention appearing at the specified sentence offset to this mention chain, and calls the method AbstractMentionChain.add(Mention), which may be overridden by subclasses to carry out additional bookkeeping when new mentions are added.
add(Mention) - Method in class com.aliasi.coref.AbstractMentionChain
Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Mention, int) - Method in interface com.aliasi.coref.MentionChain
Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Mention) - Method in class com.aliasi.coref.MentionChainImpl
Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Vector) - Method in class com.aliasi.matrix.AbstractVector
Returns the result of adding the specified vector to this vector.
add(Vector) - Method in class com.aliasi.matrix.DenseVector
 
add(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
 
add(Vector) - Method in interface com.aliasi.matrix.Vector
Returns a new vector that is the reuslt of adding this vector to the specified vector.
add(char, char[]) - Static method in class com.aliasi.util.Arrays
Return the result of adding the specified character to the specified sorted character array.
add(E) - Method in class com.aliasi.util.BinaryMap
Adds the specified element to the map with value 1.
add(E) - Method in class com.aliasi.util.BoundedPriorityQueue
Throw an unsupported operation exception.
add(E) - Method in class com.aliasi.util.CompactHashSet
Add the specified object to the set if it is not already present, returning true if the set didn't already contain the element.
add(E) - Method in class com.aliasi.util.MinMaxHeap
Add the element to the heap.
addAll(Collection<Chunk>) - Method in class com.aliasi.chunk.ChunkingImpl
Adds all of the chunks in the specified collection to this chunking.
addCase(Chunking, Chunking) - Method in class com.aliasi.chunk.ChunkingEvaluation
Add an evaluation case consisting of a reference chunk set and a response chunk set.
addCase(boolean, boolean) - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Adds a case with the specified reference and response classifications.
addCase(boolean, double) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Add a case with the specified correctness and response score.
addCase(Chunking, Chunking) - Method in class com.aliasi.sentences.SentenceEvaluation
Add the case corresponding to the specified reference and response chunkings.
addCase(String, String) - Method in class com.aliasi.spell.SpellEvaluator
Adds a training case to the spelling evaluator in the form of input text and its corrected form.
addCase(Tagging<E>, TagLattice<E>) - Method in class com.aliasi.tag.MarginalTaggerEvaluator
Add a case for evaluation consisting of the gold-standard reference tagging and a lattice representing the output of a marginal tagger.
addCase(Tagging<E>, Iterator<ScoredTagging<E>>) - Method in class com.aliasi.tag.NBestTaggerEvaluator
Add a test case consisting of the specified reference tagging and iterator over responses.
addCase(Tagging<E>, Tagging<E>) - Method in class com.aliasi.tag.TaggerEvaluator
Add a test case to this evaluator consisting of the specified reference and response taggings.
addCases(Set<T>, Set<T>) - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Add the cases corresponding to the specified set of reference positives and response positives.
addClassification(String, Classification, E) - Method in class com.aliasi.classify.BaseClassifierEvaluator
Adds the specified classification as a response for the specified reference category.
addDefaultProperty(String, String) - Method in class com.aliasi.util.AbstractCommand
Adds the specified key and value as default arguments.
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.AbstractDictionary
Adds the specified dictionary entry to the dictionary.
addEntry(DictionaryEntry<C>) - Method in interface com.aliasi.dict.Dictionary
Adds the specified dictionary entry to the dictionary.
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.MapDictionary
 
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.TrieDictionary
Equal entries will be ignored.
AddFeatureExtractor<E> - Class in com.aliasi.features
An AddFeatureExtractor returns feature vectors that result from summing the feature vectors returned by a collection of contained feature extractors.
AddFeatureExtractor(Collection<? extends FeatureExtractor<? super E>>) - Constructor for class com.aliasi.features.AddFeatureExtractor
Construct an additive feature extractor from the specified collection of extractors.
AddFeatureExtractor(FeatureExtractor<? super E>, FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.AddFeatureExtractor
Construct an additive feature extractor from the specified pair of extractors.
AddFeatureExtractor(FeatureExtractor<? super E>...) - Constructor for class com.aliasi.features.AddFeatureExtractor
Construct an additive feature extractor from the specified extractors.
addHonorific(String) - Method in class com.aliasi.coref.AbstractMentionChain
Add the specified honorific to the set of honorifics for this chain.
addInterceptFeature() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns true if this classifier automatically adds an intercept feature to each feature vector.
addInterceptFeature() - Method in class com.aliasi.crf.ChainCrf
Returns true if this CRF adds an intercept feature with value 1.0 at index 0 to all feature vectors.
addMember(K, M) - Method in class com.aliasi.util.ObjectToSet
Add a member to the value of the set mapped to by the specified key.
addMembers(K, Set<? extends M>) - Method in class com.aliasi.util.ObjectToSet
Adds a set of members to the value of the set mapped to by the specified key.
addMisses(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Incrments the positive reference count without adding a case from the classifier.
addNegativeMisses(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Incrments the negative reference count without adding a case from the classifier.
ADDRESS - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element address.
address() - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with no attributes.
address(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attributes.
address(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attribute and value.
address(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attributes and values.
address(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attributes and values.
address(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an address element with the specified attributes and values.
addSimpleAttribute(AttributesImpl, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Add a local name and value to an attributes implementation as type "CDATA".
addState(String) - Method in class com.aliasi.hmm.AbstractHmm
Adds the state with the specified name to this hidden Markov model.
addSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler
Add a symbol to the symbol table to be compiled.
addSynonym(String, String) - Method in class com.aliasi.coref.matchers.SynonymMatch
Adds the two phrases as synonyms for one another.
addTest(E) - Method in class com.aliasi.corpus.ListCorpus
Add the specified item to the list of test items.
addTrain(E) - Method in class com.aliasi.corpus.ListCorpus
Add the specified item to the list of training items.
ALIGN - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the align attribute.
allDigits(String) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters making up the specified string are digits.
allDigits(char[], int, int) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified range are digits.
allLetters(char[]) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified array are letters.
allLowerCase(char[]) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified array are lower case letters.
allLowerCase(CharSequence) - Static method in class com.aliasi.util.Strings
Returns true if the specified character sequence contains only lowercase letters.
allowDelete() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows deletions.
allowInsert() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows insertions.
allowMatch() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows matches.
allowsRejection() - Method in class com.aliasi.stats.AnnealingSchedule
Return true if this annealing schedule allows updates to be rejected.
allowSubstitute() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows substitutions.
allowTranspose() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns true if this spell checker allows transpositions.
allPunctuation(char[]) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified array are punctuation as specified by Strings.isPunctuation(char).
allPunctuation(String) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified string are punctuation as specified by Strings.isPunctuation(char).
allSymbols(char[]) - Static method in class com.aliasi.util.Strings
Returns true if none of the characters in the specified array are letters or digits.
allUpperCase(char[]) - Static method in class com.aliasi.util.Strings
Returns true if all of the characters in the specified array are upper case letters.
allWhitespace(StringBuilder) - Static method in class com.aliasi.util.Strings
Returns true if the specified buffer contains only whitespace characters.
allWhitespace(String) - Static method in class com.aliasi.util.Strings
Returns true if the specified string contains only whitespace characters.
allWhitespace(char[], int, int) - Static method in class com.aliasi.util.Strings
Returns true if the specified range of the specified character array only whitespace characters, as defined for characters by Strings.isWhitespace(char c).
ALT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the alt attribute.
AnnealingSchedule - Class in com.aliasi.stats
An AnnealingSchedule instance implements a method to return the learning rate for a specified epoch.
AnnealingSchedule() - Constructor for class com.aliasi.stats.AnnealingSchedule
Do-nothing constructor to be used by concrete implementations.
APPLET - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element applet.
applet() - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with no attributes.
applet(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attributes.
applet(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attribute and value.
applet(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attributes and values.
applet(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attributes and values.
applet(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an applet element with the specified attributes and values.
ApproxDictionaryChunker - Class in com.aliasi.dict
An ApproxDictionaryChunker implements a chunker that produces chunks based on weighted edit distance of strings from dictionary entries.
ApproxDictionaryChunker(TrieDictionary<String>, TokenizerFactory, WeightedEditDistance, double) - Constructor for class com.aliasi.dict.ApproxDictionaryChunker
Construct an approximate dictionary chunker from the specified dictionary, tokenizer factory, weighted edit distance and distance bound.
ARCHIVE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the archive attribute.
AREA - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element area.
area() - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with no attributes.
area(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attributes.
area(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attribute and value.
area(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attributes and values.
area(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attributes and values.
area(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an area element with the specified attributes and values.
areaUnderPrCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the area under the curve (AUC) for the recall-precision curve with interpolation as specified.
areaUnderRocCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the area under the receiver operating characteristic (ROC) curve.
array(E[]) - Static method in class com.aliasi.util.Iterators
Returns an iterator over the specified array of objects.
Arrays - Class in com.aliasi.util
Static utility methods for processing arrays.
arraySlice(E[], int, int) - Static method in class com.aliasi.util.Iterators
Returns a newly constructed iterator over the specified object array slice.
arrayToString(Object[]) - Static method in class com.aliasi.util.Arrays
Returns the concatenation of the string representations of the specified objects separated by commas, with the whole surrounded by square brackets and separated by a comma.
arrayToStringBuilder(StringBuilder, Object[]) - Static method in class com.aliasi.util.Arrays
Appends to the string buffer the concatenation of the string representations of the specified objects separated by commas, with the whole surrounded by square brackets and separated by a comma.
ASCII - Static variable in class com.aliasi.util.Strings
String representing the ASCII encoding for characters.
asSet(E...) - Static method in class com.aliasi.util.CollectionUtils
Return the hash set consisting of adding the specified argument to a newly constructed set.
asSymbolTable(String[]) - Static method in class com.aliasi.symbol.SymbolTableCompiler
Returns a compiled symbol table constructed from the specified list of symbols with symbol identifiers determined by array position.
AutoCompleter - Class in com.aliasi.spell
An AutoCompleter maintains a dictionary of phrases with counts and provides suggested completions based on prefix matching by weighted edit distance and phrase likelihood.
AutoCompleter(Map<String, ? extends Number>, WeightedEditDistance, int, int, double) - Constructor for class com.aliasi.spell.AutoCompleter
Construct an automatic completer from the specified phrases, phrase counts, edit distance, and search parameters.
available() - Method in class com.aliasi.io.BitInput
Returns number of bits available for reading without blocking.
averageConditionalProbability(String, String) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator
Returns the average conditional probability of the specified response category for test cases with the specified reference category.
averageConditionalProbabilityReference() - Method in class com.aliasi.classify.ConditionalClassifierEvaluator
Returns the average over all test cases of the conditional probability of the response that matches the reference category.
averageLog2JointProbability(String, String) - Method in class com.aliasi.classify.JointClassifierEvaluator
Returns the average log (base 2) joint probability of the response category for cases of the specified reference category.
averageLog2JointProbabilityReference() - Method in class com.aliasi.classify.JointClassifierEvaluator
Returns the average over all test cases of the joint log (base 2) probability of the response that matches the reference category.
averagePrecision() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the average of precisions at the true positive results.
averageRank(String, String) - Method in class com.aliasi.classify.RankedClassifierEvaluator
Returns the average rank of the specified response category for test cases with the specified reference category.
averageRankReference() - Method in class com.aliasi.classify.RankedClassifierEvaluator
Returns the average over all test samples of the rank of the the response that matches the reference category.
averageScore(String, String) - Method in class com.aliasi.classify.ScoredClassifierEvaluator
Returns the average score of the specified response category for test cases with the specified reference category.
averageScoreReference() - Method in class com.aliasi.classify.ScoredClassifierEvaluator
Returns the average over all test cases of the score of the response that matches the reference category.
AXIS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the axis attribute.

B

b() - Method in class com.aliasi.util.Pair
Return the second value of the pair.
B - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element b.
b() - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with no attributes.
b(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attributes.
b(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attribute and value.
b(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attributes and values.
b(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attributes and values.
b(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an b element with the specified attributes and values.
b3ClusterF() - Method in class com.aliasi.cluster.ClusterScore
Returns the F1 measure of the B3 precision and recall metrics with equal cluster weighting.
b3ClusterPrecision() - Method in class com.aliasi.cluster.ClusterScore
Returns the precision as defined by B3 metric with equal cluster weighting.
b3ClusterRecall() - Method in class com.aliasi.cluster.ClusterScore
Returns the recall as defined by B3 metric with equal cluster weighting.
b3ElementF() - Method in class com.aliasi.cluster.ClusterScore
Returns the F1 measure of the B3 precision and recall metrics with equal element weighting.
b3ElementPrecision() - Method in class com.aliasi.cluster.ClusterScore
Returns the precision as defined by B3 metric with equal element weighting.
b3ElementRecall() - Method in class com.aliasi.cluster.ClusterScore
Returns the recall as defined by B3 metric with equal element weighting.
balanceParens() - Method in class com.aliasi.sentences.HeuristicSentenceModel
Returns true if this model does parenthesis balancing.
BARE_ARG_PREFIX - Static variable in class com.aliasi.util.AbstractCommand
The string prefixed before a number to indicate bare arguments.
bareArguments() - Method in class com.aliasi.util.AbstractCommand
Returns the array of bare arguments, in order, supplied on the command line.
BASE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element base.
base() - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with no attributes.
base(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attributes.
base(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attribute and value.
base(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attributes and values.
base(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attributes and values.
base(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an base element with the specified attributes and values.
baseChunker() - Method in class com.aliasi.chunk.RescoringChunker
The base chunker that generates hypotheses to rescore.
BaseClassifier<E> - Interface in com.aliasi.classify
The BaseClassifier interface specifies a single method for first-best classification.
BaseClassifierEvaluator<E> - Class in com.aliasi.classify
A BaseClassifierEvaluator provides an evaluation harness for first-best classifiers.
BaseClassifierEvaluator(BaseClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.BaseClassifierEvaluator
Construct a classifier evaluator for the specified classifier that records results for the specified set of categories, storing cases or not based on the specified flag.
baseExtractor() - Method in class com.aliasi.features.FeatureExtractorFilter
Returns the contained feature extractor.
baseFeatureExtractors() - Method in class com.aliasi.features.AddFeatureExtractor
Returns an unmodifiable view of the list of base feature extractors for this additive feature extractor.
BASEFONT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element basefont.
basefont() - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with no attributes.
basefont(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attributes.
basefont(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attribute and value.
basefont(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attributes and values.
basefont(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attributes and values.
basefont(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an basefont element with the specified attributes and values.
baseName(File) - Static method in class com.aliasi.util.Files
Returns prefix of the file's name, defined as the part of the name before the final period, or the whole name if there is no final period.
baseTokenizerFactory() - Method in class com.aliasi.tokenizer.ModifiedTokenizerFactory
Return the base tokenizer factory.
baseTokenizerFactory() - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory
Return the base tokenizer factory used to generate the underlying tokens from which n-grams are generated.
basisDistribution() - Method in class com.aliasi.stats.MultinomialDistribution
Returns the multivariate distribution that forms the basis of this multinomial distribution.
bayesTopicEstimate(int[], int, int, int, Random) - Method in class com.aliasi.cluster.LatentDirichletAllocation
Return the Bayesian point estimate of the topic distribution for a document consisting of the specified tokens, using Gibbs sampling with the specified parameters.
BDO - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element bdo.
bdo() - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with no attributes.
bdo(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attributes.
bdo(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attribute and value.
bdo(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attributes and values.
bdo(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attributes and values.
bdo(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an bdo element with the specified attributes and values.
BEGIN_TAG_PREFIX - Static variable in class com.aliasi.chunk.BioTagChunkCodec
Default prefix for begin tags, "B_".
BernoulliClassifier<E> - Class in com.aliasi.classify
A BernoulliClassifier provides a feature-based classifier where feature values are reduced to booleans based on a specified threshold.
BernoulliClassifier(FeatureExtractor<E>) - Constructor for class com.aliasi.classify.BernoulliClassifier
Construct a Bernoulli classifier with the specified feature extractor and the default feature activation threshold of 0.0.
BernoulliClassifier(FeatureExtractor<E>, double) - Constructor for class com.aliasi.classify.BernoulliClassifier
Construct a Bernoulli classifier with the specified feature extractor and specified feature activation threshold.
BernoulliConstant - Class in com.aliasi.stats
A BernoulliConstant implements a Bernoulli distribution with a constant probability of success.
BernoulliConstant(double) - Constructor for class com.aliasi.stats.BernoulliConstant
Construct a constant Bernoulli distribution with the specified success probability.
BernoulliDistribution - Class in com.aliasi.stats
A BernoulliDistribution is a multivariate distribution with two outcomes, 0 (labeled "failure") and 1 (labeled "success").
BernoulliDistribution() - Constructor for class com.aliasi.stats.BernoulliDistribution
Construct a Bernoulli distribution.
bernoulliDistribution() - Method in class com.aliasi.stats.BinomialDistribution
Returns the underlying Bernoulli (two outcome) distribution underlying this binomial distribution.
BernoulliEstimator - Class in com.aliasi.stats
A BernoulliEstimator provides a maximum likelihood estimate of a Bernoulli distribution.
BernoulliEstimator() - Constructor for class com.aliasi.stats.BernoulliEstimator
Construct a Bernoulli estimator with zero counts.
bestCategory() - Method in class com.aliasi.classify.Classification
Returns the best-scoring category.
BIG - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element big.
big() - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with no attributes.
big(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attributes.
big(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attribute and value.
big(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attributes and values.
big(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attributes and values.
big(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an big element with the specified attributes and values.
BigVectorClassifier - Class in com.aliasi.classify
A BigVectorClassifier provides an efficient linear classifier implementation for large numbers of categories.
BigVectorClassifier(Vector[], int) - Constructor for class com.aliasi.classify.BigVectorClassifier
Construct a big vector classifier with the specified term vectors, maximum number of results, and categories equal to the string representations of the category identifiers.
BigVectorClassifier(Vector[], String[], int) - Constructor for class com.aliasi.classify.BigVectorClassifier
Construct a big vector classifier with the specified term vectors, categories, and maximum number of results.
BinaryLMClassifier - Class in com.aliasi.classify
A BinaryLMClassifier is a boolean dynamic language model classifier for use when there are two categories, but training data is only available for one of the categories.
BinaryLMClassifier(LanguageModel.Dynamic, double) - Constructor for class com.aliasi.classify.BinaryLMClassifier
Construct a binary character sequence classifier that accepts or rejects inputs based on their cross-entropy being above or below a fixed cross-entropy threshold.
BinaryLMClassifier(LanguageModel.Dynamic, double, String, String) - Constructor for class com.aliasi.classify.BinaryLMClassifier
Construct a binary character sequence classifier that accepts or rejects inputs based on their cross-entropy being above or below a fixed cross-entropy threshold.
BinaryMap<E> - Class in com.aliasi.util
The BinaryMap class implements a map from objects to integer objects where the only value is the integer with value 1.
BinaryMap() - Constructor for class com.aliasi.util.BinaryMap
Construct a binary map with an initial capacity of zero.
BinaryMap(int) - Constructor for class com.aliasi.util.BinaryMap
Construct a binary map with the specified initial capacity.
BinaryMap(Set<E>) - Constructor for class com.aliasi.util.BinaryMap
Construct a binary map based on the specified set of positive values.
BinomialDistribution - Class in com.aliasi.stats
A BinomialDistribution is a discrete distribution over the number of successes given a fixed number of Bernoulli trials.
BinomialDistribution(BernoulliDistribution, int) - Constructor for class com.aliasi.stats.BinomialDistribution
Construct a binomial distribution that samples from the specified Bernoulli distribution the specified number of times.
BioTagChunkCodec - Class in com.aliasi.chunk
The BioTagChunkCodec implements a chunk to tag coder/decoder based on the BIO encoding scheme and a specified tokenizer factory.
BioTagChunkCodec() - Constructor for class com.aliasi.chunk.BioTagChunkCodec
Construct a BIO-encoded tag/chunk decoder with a null tokenizer that does not enforce consistency and uses the default begin, in, and out tags.
BioTagChunkCodec(TokenizerFactory, boolean) - Constructor for class com.aliasi.chunk.BioTagChunkCodec
Construct a BIO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and tagging coded if the specified flag is set, and using the default being, in, and out tags.
BioTagChunkCodec(TokenizerFactory, boolean, String, String, String) - Constructor for class com.aliasi.chunk.BioTagChunkCodec
Construct a BIO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and tagging coded if the specified flag is set.
BitInput - Class in com.aliasi.io
A BitInput wraps an underlying input stream to provide bit-level input.
BitInput(InputStream) - Constructor for class com.aliasi.io.BitInput
Constructs a bit input wrapping the specified input stream.
BitOutput - Class in com.aliasi.io
A BitOutput wraps an underlying output stream to provide bit-level output.
BitOutput(OutputStream) - Constructor for class com.aliasi.io.BitOutput
Construct a bit output wrapping the specified output stream.
BitTrieReader - Class in com.aliasi.lm
A BitTrieReader provides a trie reader that wraps a bit-level input.
BitTrieReader(BitInput) - Constructor for class com.aliasi.lm.BitTrieReader
Construct a bit trie reader from the specified bit input.
BitTrieWriter - Class in com.aliasi.lm
A BitTrieWriter provides a trie writer that wraps a bit-level output.
BitTrieWriter(BitOutput) - Constructor for class com.aliasi.lm.BitTrieWriter
Construct a bit trie writer from the specified bit output with the specified maximum n-gram.
BLOCKQUOTE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element blockquote.
blockquote() - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with no attributes.
blockquote(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attributes.
blockquote(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attribute and value.
blockquote(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attributes and values.
blockquote(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attributes and values.
blockquote(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an blockquote element with the specified attributes and values.
BODY - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element body.
body() - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with no attributes.
body(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attributes.
body(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attribute and value.
body(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attributes and values.
body(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attributes and values.
body(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an body element with the specified attributes and values.
BooleanMatcherAdapter - Class in com.aliasi.coref
Provides a means of implementing a Matcher that returns a constant value if a boolean condition is satisifed and the no-match score otherwise.
BooleanMatcherAdapter(int) - Constructor for class com.aliasi.coref.BooleanMatcherAdapter
Construct a boolean matcher adapter that returns the specified score.
BORDER - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the border attribute.
BOUNDARY_TOKEN - Static variable in class com.aliasi.lm.TokenizedLM
The symbol used for boundaries in the counter, -2.
boundaryIndices(String[], String[]) - Method in class com.aliasi.sentences.AbstractSentenceModel
Returns an array of indices of sentence-final tokens.
boundaryIndices(String[], String[], int, int) - Method in class com.aliasi.sentences.AbstractSentenceModel
Returns an array of indices of sentence-final tokens for the slice of the token and whitespace arrays specified.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in class com.aliasi.sentences.AbstractSentenceModel
Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in class com.aliasi.sentences.HeuristicSentenceModel
Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
boundaryIndices(String[], String[]) - Method in interface com.aliasi.sentences.SentenceModel
Returns an array of indices of sentence-final tokens.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in interface com.aliasi.sentences.SentenceModel
Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
BoundedFeatureExtractor<E> - Class in com.aliasi.features
A BoundedFeatureExtractor provides a lower-bound and upper-bound on feature values between which all values from a contained base extractor are bounded.
BoundedFeatureExtractor(FeatureExtractor<? super E>, double, double) - Constructor for class com.aliasi.features.BoundedFeatureExtractor
Construct a bounded feature extractor that bounds the feature values produced by the specified extractor to be within the specified minimum and maximum values.
BoundedPriorityQueue<E> - Class in com.aliasi.util
A BoundedPriorityQueue implements a priority queue with an upper bound on the number of elements.
BoundedPriorityQueue(Comparator<? super E>, int) - Constructor for class com.aliasi.util.BoundedPriorityQueue
Construct a bounded priority queue which uses the specified comparator to order elements and allows up to the specified maximum number of elements.
BR - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element br.
br() - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with no attributes.
br(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attributes.
br(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attribute and value.
br(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attributes and values.
br(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attributes and values.
br(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an br element with the specified attributes and values.
Buffered() - Constructor for class com.aliasi.util.Iterators.Buffered
Construct a buffered iterator.
bufferNext() - Method in class com.aliasi.util.Iterators.Buffered
Returns the next object for this iterator, or null if there are no more objects.
BUTTON - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element button.
button() - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with no attributes.
button(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attributes.
button(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attribute and value.
button(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attributes and values.
button(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attributes and values.
button(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an button element with the specified attributes and values.
byteAsUnsigned(byte) - Static method in class com.aliasi.util.Math
Returns the integer value of reading the specified byte as an unsigned value.
bytesToHex(byte[]) - Static method in class com.aliasi.util.Strings
Returns a hexadecimal string-based representation of the specified byte array.

C

cache() - Method in class com.aliasi.features.CacheFeatureExtractor
Returns the cache for this cached feature extractor.
CachedMention - Class in com.aliasi.coref
A CachedMention stores all of the retun values specified by the Mention interface.
CachedMention(String, String, Set<String>, String[], String, boolean) - Constructor for class com.aliasi.coref.CachedMention
Construct a cached mention from the specified return values.
CacheFeatureExtractor<E> - Class in com.aliasi.features
A CacheFeatureExtractor uses a cache to store a mapping from objects to their feature vector maps.
CacheFeatureExtractor(FeatureExtractor<? super E>, Map<E, Map<String, ? extends Number>>) - Constructor for class com.aliasi.features.CacheFeatureExtractor
Construct a cached feature extractor that caches the results of the specified extractor using the specified cache.
capitalized(char[]) - Static method in class com.aliasi.util.Strings
Returns true if the first character in the specified array is an upper case letter and all subsequent characters are lower case letters.
CAPTION - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element caption.
caption() - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with no attributes.
caption(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attributes.
caption(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attribute and value.
caption(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attributes and values.
caption(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attributes and values.
caption(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an caption element with the specified attributes and values.
CASE_RESTORING - Static variable in class com.aliasi.spell.CompiledSpellChecker
A weighted edit distance ordered by similarity that treats case variants as zero cost and all other edits as infinite cost.
caseAccuracy() - Method in class com.aliasi.tag.TaggerEvaluator
Return the accuracy at the entire case level.
cases() - Method in class com.aliasi.chunk.ChunkingEvaluation
Return the set of cases consisting of pairs of reference and response chunkings.
caseSensitive() - Method in class com.aliasi.dict.ExactDictionaryChunker
Returns true if this dictionary chunker is case sensitive.
categories() - Method in class com.aliasi.classify.BaseClassifierEvaluator
Returns a copy of the the categories for which this evaluator stores results.
categories() - Method in class com.aliasi.classify.BernoulliClassifier
Returns a copy of the list the categories for this classifier.
categories() - Method in class com.aliasi.classify.ConfusionMatrix
Return a copy of the array of categories for this confusion matrix.
categories() - Method in class com.aliasi.classify.KnnClassifier
Returns a copy of he current list of categories for this classifier.
categories() - Method in class com.aliasi.classify.LMClassifier
Returns the array of categories for this classifier.
categories() - Method in class com.aliasi.classify.TfIdfClassifierTrainer
Return an unmodifiable view of the underlying set of categories seen in the training data.
categories() - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer
Returns a copy of the array of categories used by this categorizer.
categories() - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer
Returns a copy of the array of strings representing all the categories produced by this categorizer.
categories() - Method in interface com.aliasi.tokenizer.TokenCategorizer
Returns an array of all available categories produced by this categorizer.
categorize(String) - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer
Returns the category of the specified token.
categorize(String) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer
Returns the type of a token, based on its structure or other information.
categorize(String) - Method in interface com.aliasi.tokenizer.TokenCategorizer
Returns the category string for the specified token.
CATEGORIZER - Static variable in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer
This is a constant Indo-European token categorizer.
category(int) - Method in class com.aliasi.classify.RankedClassification
Returns the category with the specified rank in the classification.
category() - Method in class com.aliasi.dict.DictionaryEntry
Returns the category for this dictionary entry.
categoryDistribution() - Method in class com.aliasi.classify.LMClassifier
Returns a multivariate distribution over categories for this classifier.
categoryEntryIt(C) - Method in class com.aliasi.dict.AbstractDictionary
Returns an iterator over the dictionary entries with the specified category.
categoryEntryIt(C) - Method in interface com.aliasi.dict.Dictionary
Returns an iterator over the dictionary entries with the specified category.
categoryEntryList(C) - Method in class com.aliasi.dict.AbstractDictionary
Returns the dictionary entries with the specified category.
categoryEntryList(C) - Method in interface com.aliasi.dict.Dictionary
Returns the dictionary entries with the specified category.
categorySet() - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns a set of categories for this classifier.
categorySymbols() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns a copy of the category symbols used by this classifier in the same order as used by the underlying logistic regression model.
cauchy(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Cauchy prior with the specified prior squared scales for the dimensions.
cauchy(double[]) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Cauchy prior for the specified squared scales.
CDATA_ATTS_TYPE - Static variable in class com.aliasi.xml.SimpleElementHandler
The type of character data attributes.
CELLPADDING - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the cellpadding attribute.
CELLSPACING - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the cellspacing attribute.
CENTER - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element center.
center() - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with no attributes.
center(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attributes.
center(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attribute and value.
center(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attributes and values.
center(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attributes and values.
center(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an center element with the specified attributes and values.
ChainCrf<E> - Class in com.aliasi.crf
The ChainCrf<E> class implements linear chain conditional random field decoding and estimation for input token sequences of type E.
ChainCrf(String[], Vector[], SymbolTable, ChainCrfFeatureExtractor<E>, boolean) - Constructor for class com.aliasi.crf.ChainCrf
Construct a conditional random field from the specified tags, feature vector coefficients, symbol table for feature, feature extractors and flag indicating whether to add intercepts or not.
ChainCrf(String[], boolean[], boolean[], boolean[][], Vector[], SymbolTable, ChainCrfFeatureExtractor<E>, boolean) - Constructor for class com.aliasi.crf.ChainCrf
Construct a conditional random field from the specified tags, feature vector coefficients, symbol table for feature, feature extractors and flag indicating whether to add intercepts or not.
ChainCrfChunker - Class in com.aliasi.crf
A ChainCrfChunker implements chunking based on a chain CRF over string sequences, a tokenizer factory, and a tag to chunk coder/decoder.
ChainCrfChunker(ChainCrf<String>, TokenizerFactory, TagChunkCodec) - Constructor for class com.aliasi.crf.ChainCrfChunker
Construct a chunker based on the specified chain conditional random field, tokenizer factory and tag-chunk coder/decoder.
ChainCrfFeatureExtractor<E> - Interface in com.aliasi.crf
The ChainCrfFeatureExtractor interface specifies a method for conditional random fields to extract the necessary node and edge features for estimation and tagging.
ChainCrfFeatures<E> - Class in com.aliasi.crf
The ChainCrfFeatures interface specifies methods for extracting node and edge features for a conditional random field.
ChainCrfFeatures(List<E>, List<String>) - Constructor for class com.aliasi.crf.ChainCrfFeatures
Construct a chain CRF feature set for the specified lists of input tokens and possible output tags.
CHAR - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the char attribute.
characters() - Method in class com.aliasi.tag.StringTagging
Returns the characters underlying this string tagging.
characters(char[], int, int) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated or ignored.
characters(char[], int, int) - Method in class com.aliasi.xml.GroupCharactersFilter
Adds the characters to the character accumulator.
characters(char[], int, int) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
characters(char[], int, int) - Method in class com.aliasi.xml.SAXWriter
Prints the characters in the specified range.
characters(String) - Method in class com.aliasi.xml.SimpleElementHandler
Converts the string to a character array in order to call DefaultHandler.characters(char[],int,int) to handle the characters.
characters(char[]) - Method in class com.aliasi.xml.SimpleElementHandler
Handls the specified character array by delegation to DefaultHandler.characters(char[],int,int).
characters(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Converts the string to a character array in order to call DefaultHandler.characters(char[],int,int) to handle the characters.
characters(DefaultHandler, char[]) - Static method in class com.aliasi.xml.SimpleElementHandler
Handls the specified character array by delegation to DefaultHandler.characters(char[],int,int).
characters(char[], int, int) - Method in class com.aliasi.xml.TextAccumulatorHandler
Adds the specified character slice to the string buffer.
characters(char[], int, int) - Method in class com.aliasi.xml.TextContentFilter
Handle character content, delegating unfiltered characters to the contained handler, and delegating filtered characters to TextContentFilter.filteredCharacters(char[],int,int).
charactersFollowing(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter
Returns the array of characters that have been observed following the specified character slice in unicode order.
charactersFollowing(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
 
charactersFollowing(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
 
CharacterTokenCategorizer - Class in com.aliasi.tokenizer
Returns a category for tokens made up out of a single character.
CharacterTokenizerFactory - Class in com.aliasi.tokenizer
A CharacterTokenizerFactory considers each non-whitespace character in the input to be a distinct token.
CharLmHmmChunker - Class in com.aliasi.chunk
A CharLmHmmChunker employs a hidden Markov model estimator and tokenizer factory to learn a chunker.
CharLmHmmChunker(TokenizerFactory, AbstractHmmEstimator) - Constructor for class com.aliasi.chunk.CharLmHmmChunker
Construct a CharLmHmmChunker from the specified tokenizer factory and hidden Markov model estimator.
CharLmHmmChunker(TokenizerFactory, AbstractHmmEstimator, boolean) - Constructor for class com.aliasi.chunk.CharLmHmmChunker
Construct a CharLmHmmChunker from the specified tokenizer factory, HMM estimator and tag-smoothing flag.
CharLmRescoringChunker - Class in com.aliasi.chunk
A CharLmRescoringChunker provides a long-distance character language model-based chunker that operates by rescoring the output of a contained character language model HMM chunker.
CharLmRescoringChunker(TokenizerFactory, int, int, int, double) - Constructor for class com.aliasi.chunk.CharLmRescoringChunker
Construct a character language model rescoring chunker based on the specified components.
CharLmRescoringChunker(TokenizerFactory, int, int, int, double, boolean) - Constructor for class com.aliasi.chunk.CharLmRescoringChunker
Construct a character language model rescoring chunker based on the specified components.
CHAROFF - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the charoff attribute.
CharSeqCounter - Interface in com.aliasi.lm
A CharSeqCounter counter provides counts for sequences of characters.
CharSeqMultiCounter - Class in com.aliasi.lm
A CharSeqMultiCounter combines the counts from a pair of character sequence counters.
CharSeqMultiCounter(CharSeqCounter[]) - Constructor for class com.aliasi.lm.CharSeqMultiCounter
Construct a character sequence counter from the specified array of counters.
CharSeqMultiCounter(CharSeqCounter, CharSeqCounter) - Constructor for class com.aliasi.lm.CharSeqMultiCounter
Construct a multi-counter from the specified pair of counters.
charSequence() - Method in class com.aliasi.chunk.ChunkAndCharSeq
Return the underlying character sequence for this chunk.
charSequence() - Method in interface com.aliasi.chunk.Chunking
Returns the character sequence underlying this chunking.
charSequence() - Method in class com.aliasi.chunk.ChunkingImpl
Returns the character sequence underlying this chunking.
CHARSET - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the charset attribute.
charsetName() - Method in class com.aliasi.xml.SAXWriter
Returns the name of the character set being used by this writer.
CharSuffixArray - Class in com.aliasi.suffixarray
A CharSuffixArray implements a suffix array of characters.
CharSuffixArray(String) - Constructor for class com.aliasi.suffixarray.CharSuffixArray
Construct a suffix array from the specified string, with no bound on suffix length.
CharSuffixArray(String, int) - Constructor for class com.aliasi.suffixarray.CharSuffixArray
Construct a suffix array from the specified string, bounding comparisons for sorting by the specified maximum suffix length.
checkArgsStartEnd(char[], int, int) - Static method in class com.aliasi.util.Strings
Throws an exception if the start and end plus one indices are not in the range for the specified array of characters.
CHECKED - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the checked attribute.
checkParameterImplication(String, String) - Method in class com.aliasi.util.AbstractCommand
Throws an illegal argument exception if the first parameter is defined in the command the second parameter is not.
chiSquared() - Method in class com.aliasi.classify.ConfusionMatrix
Returns Pearson's C2 independence test statistic for this matrix.
chiSquared() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the χ2 value.
chiSquared(int[]) - Method in class com.aliasi.stats.MultinomialDistribution
Returns the chi-squared statistic for rejecting the null hypothesis that the specified samples were generated by this distribution.
chiSquaredDegreesOfFreedom() - Method in class com.aliasi.classify.ConfusionMatrix
Return the number of degrees of freedom of this confusion matrix for the χ2 statistic.
chiSquaredIndependence(int[]) - Method in class com.aliasi.lm.TokenizedLM
Returns the maximum value of Pearson's C2 independence test statistic resulting from splitting the specified n-gram in half to derive a contingency matrix.
chiSquaredIndependence(double, double, double, double) - Static method in class com.aliasi.stats.Statistics
Returns Pearson's C2 goodness-of-fit statistic for independence over the specified binary contingency matrix.
chiSquaredIndependence(double[][]) - Static method in class com.aliasi.stats.Statistics
Returns the value of Pearson's C2 goodness of fit statistic for independence over the specified contingency matrix.
choiceLogProbs(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser
Return an array of (natural) log choice probabilities corresponding to the input array of choices.
choiceProbs(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser
Return an array of choice probabilities corresponding to the input array of choices.
choose(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser
Returns the most likely choice among the choices in the specified array of vectors.
chooser() - Method in class com.aliasi.dca.DiscreteObjectChooser
Returns the discrete chooser on which this object chooser is based.
Chunk - Interface in com.aliasi.chunk
The Chunk interface specifies a slice of a character sequence, a chunk type and a chunk score.
chunk() - Method in class com.aliasi.chunk.ChunkAndCharSeq
Return the chunk underlying this compositie chunk and character sequence.
chunk(CharSequence) - Method in interface com.aliasi.chunk.Chunker
Return the chunking of the specified character sequence.
chunk(char[], int, int) - Method in interface com.aliasi.chunk.Chunker
Return the chunking of the specified character slice.
chunk(char[], int, int) - Method in class com.aliasi.chunk.HmmChunker
Returns a chunking of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.HmmChunker
Returns a chunking of the specified character sequence.
chunk(CharSequence) - Method in class com.aliasi.chunk.RegExChunker
Return the chunking of the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.RegExChunker
Return the chunking of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.RescoringChunker
Returns the first-best chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.RescoringChunker
Returns the first-best chunking for the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.TokenShapeChunker
Return the set of named-entity chunks derived from the uderlying decoder over the tokenization of the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.TokenShapeChunker
Return the set of named-entity chunks derived from the underlying decoder over the tokenization of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.crf.ChainCrfChunker
 
chunk(char[], int, int) - Method in class com.aliasi.crf.ChainCrfChunker
 
chunk(CharSequence) - Method in class com.aliasi.dict.ApproxDictionaryChunker
Return the approximate dictionary-based chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.dict.ApproxDictionaryChunker
Return the approximate dictionary-based chunking for the specified character sequence.
chunk(CharSequence) - Method in class com.aliasi.dict.ExactDictionaryChunker
Returns the chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.dict.ExactDictionaryChunker
Returns the chunking for the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.sentences.SentenceChunker
Return the chunking derived from the underlying sentence model over the tokenization of the specified character slice.
chunk(char[], int, int) - Method in class com.aliasi.sentences.SentenceChunker
Return the chunking derived from the underlying sentence model over the tokenization of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.tokenizer.TokenChunker
Return the chunking produced by tokenizing the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.tokenizer.TokenChunker
Return the chunking produced by tokenizing the specified character array slice.
ChunkAndCharSeq - Class in com.aliasi.chunk
The ChunkAndCharSeq is an immutable composite of a chunk and a character sequence.
ChunkAndCharSeq(Chunk, CharSequence) - Constructor for class com.aliasi.chunk.ChunkAndCharSeq
Construct a composite of the specified chunk and sequence.
Chunker - Interface in com.aliasi.chunk
The Chunker interface specifies methods for returning a chunking given a character sequence or character slice.
chunker() - Method in class com.aliasi.chunk.ChunkerEvaluator
Returns the underlying chunker for this evaluator.
ChunkerEvaluator - Class in com.aliasi.chunk
The ChunkerEvaulator class provides an evaluation framework for chunkers.
ChunkerEvaluator(Chunker) - Constructor for class com.aliasi.chunk.ChunkerEvaluator
Construct an evaluator for the specified chunker.
ChunkerFeatureExtractor - Class in com.aliasi.features
A ChunkerFeatureExtractor implements a feature extractor for character sequences based on a specified chunker.
ChunkerFeatureExtractor(Chunker, boolean) - Constructor for class com.aliasi.features.ChunkerFeatureExtractor
Construct a new chunker feature extractor based on the specified chunker, including the phrases extracted if the specified flag is true.
ChunkFactory - Class in com.aliasi.chunk
The ChunkFactory provides static factory methods for creating chunks from components.
Chunking - Interface in com.aliasi.chunk
The Chunking interface specifies a set of chunks over a shared underlying character sequence.
ChunkingEvaluation - Class in com.aliasi.chunk
A ChunkingEvaluation stores and reports the results of evaluating response chunkings against reference chunkings.
ChunkingEvaluation() - Constructor for class com.aliasi.chunk.ChunkingEvaluation
Construct a chunking evaluation.
chunkingEvaluation() - Method in class com.aliasi.sentences.SentenceEvaluation
Return the chunking evaluation for this sentence evaluation.
ChunkingImpl - Class in com.aliasi.chunk
A ChunkingImpl provides a mutable, set-based implementation of the chunking interface.
ChunkingImpl(CharSequence) - Constructor for class com.aliasi.chunk.ChunkingImpl
Constructs a chunking implementation to hold chunks over the specified character sequence.
ChunkingImpl(char[], int, int) - Constructor for class com.aliasi.chunk.ChunkingImpl
Construct a chunking implementation to hold chunks over the specified character slice.
chunkingToStringTagging(TagChunkCodec, ObjectHandler<Chunking>) - Static method in class com.aliasi.chunk.TagChunkCodecAdapters
Return the string tagging handler that converts string taggings to chunkings.
chunkingToTagging(TagChunkCodec, ObjectHandler<Chunking>) - Static method in class com.aliasi.chunk.TagChunkCodecAdapters
Returns the tagging handler that converts taggings to chunkings using the specified codec.
chunkLM(String) - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker
Returns the sequence language model for chunks of the specified type.
chunkSet() - Method in interface com.aliasi.chunk.Chunking
Returns the chunks for this chunking.
chunkSet() - Method in class com.aliasi.chunk.ChunkingImpl
Return an unmodifiable view of the set of chunks for this chunking.
CITE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element cite.
cite() - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with no attributes.
cite(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attributes.
cite(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attribute and value.
cite(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attributes and values.
cite(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attributes and values.
cite(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an cite element with the specified attributes and values.
CITE_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the cite attribute.
CLASS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the class attribute.
CLASSID - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the classid attribute.
Classification - Class in com.aliasi.classify
A Classification provides a first-best category.
Classification(String) - Constructor for class com.aliasi.classify.Classification
Construct a classification with the specified first-best category.
Classified<E> - Class in com.aliasi.classify
A Classified represents an object that has been classified with a first-best classification.
Classified(E, Classification) - Constructor for class com.aliasi.classify.Classified
Construct a classified object consisting of the specified object and classification.
classifier() - Method in class com.aliasi.classify.BaseClassifierEvaluator
Returns the classifier for this evaluator.
classifier() - Method in class com.aliasi.classify.ConditionalClassifierEvaluator
Return the classifier being evaluated.
classifier() - Method in class com.aliasi.classify.JointClassifierEvaluator
Return the classifier being evaluated.
classifier() - Method in class com.aliasi.classify.RankedClassifierEvaluator
Return the classifier being evaluated.
classifier() - Method in class com.aliasi.classify.ScoredClassifierEvaluator
Return the classifier being evaluated.
classifier() - Method in class com.aliasi.tag.ClassifierTagger
Returns the underlying classifier for this classifier tagger.
ClassifierTagger<E> - Class in com.aliasi.tag
A ClassifierTagger implements the first-best tagger interface with a classifier that operates left-to-right over the tokens, classifying one token at a time.
ClassifierTagger(BaseClassifier<ClassifierTagger.State<E>>) - Constructor for class com.aliasi.tag.ClassifierTagger
Construct a classifier tagger based on the specified base classifier over states.
ClassifierTagger.State<F> - Class in com.aliasi.tag
A ClassifierTagger.State represents the full list of input tokens and a list of the tags assigned so far.
classify(E) - Method in interface com.aliasi.classify.BaseClassifier
Returns the first-best classification for the specified input.
classify(E) - Method in class com.aliasi.classify.BernoulliClassifier
Classify the specified input using this Bernoulli classifier.
classify(Vector) - Method in class com.aliasi.classify.BigVectorClassifier
Return a scored classification consisting of the top results for the specified vector input.
classify(E) - Method in interface com.aliasi.classify.ConditionalClassifier
Returns the n-best conditional probability classification for the specified input.
classify(E) - Method in interface com.aliasi.classify.JointClassifier
Returns the n-best joint probability classification for the specified input.
classify(E) - Method in class com.aliasi.classify.KnnClassifier
Return the k-nearest-neighbor classification result for the specified input object.
classify(CharSequence) - Method in class com.aliasi.classify.LMClassifier
Returns the joint classification of the specified character sequence.
classify(E) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Return the conditional classification of the specified object using logistic regression classification.
classify(E) - Method in class com.aliasi.classify.PerceptronClassifier
Return the scored classification for the specified input.
classify(E) - Method in interface com.aliasi.classify.RankedClassifier
Return the n-best classification of the specified object.
classify(E) - Method in interface com.aliasi.classify.ScoredClassifier
Returns the n-best scored classification for the specified input.
classify(CharSequence) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Return the classification of the specified character sequence.
classify(Vector) - Method in class com.aliasi.stats.LogisticRegression
Returns an array of conditional probabilities indexed by outcomes for the specified input vector.
classify(Vector, double[]) - Method in class com.aliasi.stats.LogisticRegression
Fills the specified array with the conditional probabilities indexed by outcomes for the specified input vector.
classifyFeatures(Map<String, ? extends Number>) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Return the conditional classification of a feature map using this classifier.
classifyJoint(char[], int, int) - Method in class com.aliasi.classify.LMClassifier
A convenience method returning a joint classification over a character array slice.
classifyVector(Vector) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns the classification of the specified vector using the logistic regression model underlying this classifier.
clear() - Method in class com.aliasi.symbol.MapSymbolTable
Clears all of the symbols from the symbol table.
clear() - Method in interface com.aliasi.symbol.SymbolTable
Removes all the symbols from the symbol table.
clear() - Method in class com.aliasi.symbol.SymbolTableCompiler
Throws an unsupported operation exception.
clear() - Method in class com.aliasi.util.BinaryMap
Removes all of the mappings from this map.
clear() - Method in class com.aliasi.util.BoundedPriorityQueue
Removes all elements from this queue.
clear() - Method in class com.aliasi.util.CompactHashSet
Remove all of the elements from this set.
clear() - Method in class com.aliasi.util.FastCache
Removes all entries from this cache.
clear() - Method in class com.aliasi.util.ShortPriorityQueue
Removes all the elements from the priority queue.
clearSynonyms() - Method in class com.aliasi.coref.matchers.SynonymMatch
Removes all synonym pairs from this synonym matcher.
close() - Method in class com.aliasi.io.BitInput
Closes this input stream and releases associated resources.
close() - Method in class com.aliasi.io.BitOutput
Closes underlying output stream and releases any resources associated with the stream.
close() - Method in class com.aliasi.io.Reporter
Close this reporter and free all resources associated with it.
closeInputSource(InputSource) - Static method in class com.aliasi.util.Streams
Close the specified input source.
closeInputStream(InputStream) - Static method in class com.aliasi.util.Streams
Deprecated.
closeOutputStream(OutputStream) - Static method in class com.aliasi.util.Streams
Deprecated.
closeQuietly(Closeable) - Static method in class com.aliasi.util.Streams
Closes the closeable without raising exceptions.
closeReader(Reader) - Static method in class com.aliasi.util.Streams
Deprecated.
closeWriter(Writer) - Static method in class com.aliasi.util.Streams
Deprecated.
cluster(Set<? extends E>) - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer
Returns the clustering of the specified elements.
cluster(Set<? extends E>) - Method in interface com.aliasi.cluster.Clusterer
Return a clustering of the specified set of elements.
cluster(Set<? extends E>) - Method in class com.aliasi.cluster.KMeansClusterer
Return a k-means clustering of the specified set of elements using a freshly generated random number generator without intermediate reporting.
cluster(Set<? extends E>, Random, Reporter) - Method in class com.aliasi.cluster.KMeansClusterer
Return the k-means clustering for the specified set of elements, using the specified random number generator, sending progress reports to the specified reporter.
Clusterer<E> - Interface in com.aliasi.cluster
The Clusterer interface defines a means of clustering a set of input elements
ClusterScore<E> - Class in com.aliasi.cluster
A ClusterScore provides a range of cluster scoring metrics for reference partitions versus response partitions.
ClusterScore(Set<? extends Set<? extends E>>, Set<? extends Set<? extends E>>) - Constructor for class com.aliasi.cluster.ClusterScore
Construct a cluster score object from the specified reference and response partitions.
CODE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element code.
code() - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with no attributes.
code(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attributes.
code(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attribute and value.
code(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attributes and values.
code(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attributes and values.
code(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an code element with the specified attributes and values.
CODEBASE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the codebase attribute.
codec() - Method in class com.aliasi.crf.ChainCrfChunker
Returns the tag/chunk coder/decoder for this chunker.
CODETYPE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the codetype attribute.
coefficients() - Method in class com.aliasi.crf.ChainCrf
Return the coefficient vectors for this CRF.
coefficients() - Method in class com.aliasi.dca.DiscreteChooser
Return an unmodifiable view of the coefficients underlying this discrete chooser.
COL - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element col.
col() - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with no attributes.
col(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attributes.
col(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attribute and value.
col(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attributes and values.
col(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attributes and values.
col(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an col element with the specified attributes and values.
COLGROUP - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element colgroup.
colgroup() - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with no attributes.
colgroup(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attributes.
colgroup(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attribute and value.
colgroup(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attributes and values.
colgroup(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attributes and values.
colgroup(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an colgroup element with the specified attributes and values.
CollectionUtils - Class in com.aliasi.util
The CollectionUtils class provides static utility methods for dealing with Java collections.
collocationSet(int, int, int) - Method in class com.aliasi.lm.TokenizedLM
Returns an array of collocations in order of confidence that their token sequences are not independent.
COLS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the cols attribute.
COLSPAN - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the colspan attribute.
columnVector(int) - Method in class com.aliasi.matrix.AbstractMatrix
Returns the specified column of this matrix.
columnVector(int) - Method in interface com.aliasi.matrix.Matrix
Returns the vector of values in the specified column.
com.aliasi.chunk - package com.aliasi.chunk
Classes for extracting meaningful chunks (spans) of text.
com.aliasi.classify - package com.aliasi.classify
Classes for classifying data and evaluation.
com.aliasi.cluster - package com.aliasi.cluster
Classes for clustering data and evaluation.
com.aliasi.coref - package com.aliasi.coref
Classes for determining entity coreference within documents.
com.aliasi.coref.matchers - package com.aliasi.coref.matchers
Classes for matching and killing functions.
com.aliasi.corpus - package com.aliasi.corpus
Classes for parsing and handling various corpora.
com.aliasi.crf - package com.aliasi.crf
Classes and interfaces for conditional random fields.
com.aliasi.dca - package com.aliasi.dca
Classes for fitting and running discrete choice analysis (DCA) models.
com.aliasi.dict - package com.aliasi.dict
Classes for handling dictionaries.
com.aliasi.features - package com.aliasi.features
Classes for extracting feature vectors from objects and parsing objects for feature handlers.
com.aliasi.hmm - package com.aliasi.hmm
Classes for estimating and decoding hidden Markov models.
com.aliasi.io - package com.aliasi.io
Classes to handle input, output, file selection, and logging.
com.aliasi.lm - package com.aliasi.lm
Classes for character- and token-based language models.
com.aliasi.matrix - package com.aliasi.matrix
Classes for matrices and vectors.
com.aliasi.sentences - package com.aliasi.sentences
Classes for sentence-boundary detection.
com.aliasi.spell - package com.aliasi.spell
Classes for spelling correction and edit distance.
com.aliasi.stats - package com.aliasi.stats
Classes for handling basic statical distributions and estimators.
com.aliasi.suffixarray - package com.aliasi.suffixarray
Classes for spelling correction and edit distance.
com.aliasi.symbol - package com.aliasi.symbol
Classes for string-based symbol tables.
com.aliasi.tag - package com.aliasi.tag
Classes and interfaces for sequence tagging, including evaluators.
com.aliasi.tokenizer - package com.aliasi.tokenizer
Classes for tokenizing character sequences.
com.aliasi.util - package com.aliasi.util
Classes for general Java utilities.
com.aliasi.version - package com.aliasi.version
 
com.aliasi.xml - package com.aliasi.xml
Classes for XML, including SAX filters and file visitors.
CommaSeparatedValues - Class in com.aliasi.util
A CommaSeparatedValues object represents a two-dimensional array of strings which may be read and written in comma-separated-value string representation.
CommaSeparatedValues(File, String) - Constructor for class com.aliasi.util.CommaSeparatedValues
Construct a comma-separated values array from the specified file using the specified character set.
CommaSeparatedValues(InputStream, String) - Constructor for class com.aliasi.util.CommaSeparatedValues
Construct a comma-separated values array from the specified input stream using the specified character set.
CommaSeparatedValues(Reader) - Constructor for class com.aliasi.util.CommaSeparatedValues
Construct a comma-separated values array from the specified reader.
comment(char[], int, int) - Method in class com.aliasi.xml.SAXWriter
Convenience method to write a slice of character data as a comment.
comment(String) - Method in class com.aliasi.xml.SAXWriter
Write the specified string as a comment.
CompactHashSet<E> - Class in com.aliasi.util
A CompactHashSet implements the set interface more tightly in memory and more efficiently than Java's HashSet.
CompactHashSet(int) - Constructor for class com.aliasi.util.CompactHashSet
Construct a compact hash set with the specified initial capacity.
CompactHashSet(E...) - Constructor for class com.aliasi.util.CompactHashSet
Construct a compact hash set containing the specified list of values.
COMPARATOR - Static variable in enum com.aliasi.io.LogLevel
Returns a comparator that compares levels by severity.
comparator() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the comparator for this sorted set.
comparator() - Static method in class com.aliasi.util.ScoredObject
Returns a comparator that sorts in ascending order of score.
comparator() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the comparator for this priority queue.
Comparators - Class in com.aliasi.util
The Comparators class is just a wrapper for primitive comparators.
Compilable - Interface in com.aliasi.util
The Compilable interface specifies a general way in which an object may be compiled to an object output.
compile(Compilable) - Static method in class com.aliasi.util.AbstractExternalizable
Return the compiled form of the specified compilable.
CompiledNGramBoundaryLM - Class in com.aliasi.lm
A CompiledNGramBoundaryLM is constructed by reading the serialized form of an instance of NGramBoundaryLM.
CompiledNGramProcessLM - Class in com.aliasi.lm
A CompiledNGramProcessLM implements a conditional process language model.
CompiledSpellChecker - Class in com.aliasi.spell
The CompiledSpellChecker class implements a first-best spell checker based on models of what users are likely to mean and what errors they are likely to make in expressing their meaning.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, TokenizerFactory, Set<String>, int, double, double, double) - Constructor for class com.aliasi.spell.CompiledSpellChecker
Construct a compiled spell checker based on the specified language model and similarity edit distance, set of valid output tokens, maximum n-best size per character, and the specified edit penalities for editing known tokens or the first or second characters of tokens.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, TokenizerFactory, Set<String>, int) - Constructor for class com.aliasi.spell.CompiledSpellChecker
Construct a compiled spell checker based on the specified language model and edit distance, tokenizer factory, the set of valid output tokens, and maximum n-best size, with default known token and first and second character edit costs.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, Set<String>, int) - Constructor for class com.aliasi.spell.CompiledSpellChecker
Construct a compiled spell checker based on the specified language model and edit distance, a null tokenizer factory, the set of valid output tokens, and maximum n-best size, with default known token and first and second character edit costs.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, Set<String>) - Constructor for class com.aliasi.spell.CompiledSpellChecker
Construct a compiled spell checker based on the specified language model and edit distance, with a null tokenizer factory, the specified set of valid output tokens, with default value for n-best size, known token edit cost and first and second character edit costs.
CompiledTokenizedLM - Class in com.aliasi.lm
A CompiledTokenizedLM implements a tokenized bounded sequence language model.
compileOrSerialize(Object, ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable
Compile the object to the output if it is compilable, else serialize it to the output if it is serializable but not compilable.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.CharLmHmmChunker
Compiles this model to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.CharLmRescoringChunker
Compiles this model to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.RegExChunker
Compiles this regular-expression chunker to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.TrainTokenShapeChunker
Compiles a chunker based on the training data received by this trainer to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.DynamicLMClassifier
Writes a compiled version of this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.KnnClassifier
Compiles this k-nearest-neighbor classifier to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Compile this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.TfIdfClassifierTrainer
Compile this trainer to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Compile this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.AbstractDictionary
Compiles this dictionary to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.DictionaryEntry
Compiles this dictionary entry to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.MapDictionary
Serializes the object to the specified output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.TrieDictionary
Compile the entries in this dictionary to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.hmm.AbstractHmmEstimator
Compiles a copy of this estimated HMM to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.hmm.HmmCharLmEstimator
 
compileTo(ObjectOutput) - Method in class com.aliasi.lm.NGramBoundaryLM
Writes a compiled version of this boundary language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.NGramProcessLM
Writes a compiled version of this process language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.TokenizedLM
Writes a compiled version of this tokenized language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.UniformBoundaryLM
Writes a compiled version of this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.UniformProcessLM
Writes a compiled version of this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.spell.FixedWeightEditDistance
Writes a compiled version of this edit distance to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.spell.TrainSpellChecker
Writes a compiled spell checker to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.BernoulliEstimator
Compiles this Bernoulli estimator to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.LogisticRegression
Compiles this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.MultivariateEstimator
Writes a constant version of this estimator to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.PoissonConstant
Compiles an instance of this constant Poisson distribution to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.PoissonEstimator
Writes a constant Poisson distribution with the same mean as the current value of this Poisson distribution's mean.
compileTo(ObjectOutput) - Method in class com.aliasi.symbol.SymbolTableCompiler
Compiles the symbol table to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.tag.ClassifierTagger
Compile this classifier tagger to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer
Compiles this token categorizer to the specified object output.
compileTo(Compilable, File) - Static method in class com.aliasi.util.AbstractExternalizable
Compiles the specified compilable object to the specified file.
compileTo(ObjectOutput) - Method in interface com.aliasi.util.Compilable
Compile this object to the specified object output.
complete(String) - Method in class com.aliasi.spell.AutoCompleter
Returns a set of scored phrases sorted into decreasing order of score.
CompleteLinkClusterer<E> - Class in com.aliasi.cluster
A CompleteLinkClusterer implements complete link agglomerative clustering.
CompleteLinkClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.CompleteLinkClusterer
Construct a complete link clusterer with the specified distance bound.
CompleteLinkClusterer(Distance<? super E>) - Constructor for class com.aliasi.cluster.CompleteLinkClusterer
Construct a complete link clusterer with no distance bound.
concatenate(char[], char) - Static method in class com.aliasi.util.Arrays
Returns the array of characters consisting of the members of the first specified array followed by the specified character.
concatenate(String[], String[]) - Static method in class com.aliasi.util.Arrays
Returns a new array of strings containing the elements of the first array of strings specified followed by the elements of the second array of strings specified.
concatenate(Object[]) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, separating with the default separator Strings.DEFAULT_SEPARATOR_STRING.
concatenate(Object[], String) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, separating with the specified string spacer.
concatenate(Object[], int, String) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through the rest of the string, separating with the specified string spacer.
concatenate(Object[], int, int) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through one element before the specified end index, separating with the default spacer Strings.DEFAULT_SEPARATOR_STRING.
concatenate(Object[], int, int, String) - Static method in class com.aliasi.util.Strings
Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through one element before the specified end index, separating with the specified spacer.
ConditionalClassification - Class in com.aliasi.classify
A ConditionalClassification is a scored classification which estimates conditional probabilities of categories given an input.
ConditionalClassification(String[], double[]) - Constructor for class com.aliasi.classify.ConditionalClassification
Construct a conditional classification with the specified categories and conditional probabilities which sum to one within the default tolerance of 0.01.
ConditionalClassification(String[], double[], double[]) - Constructor for class com.aliasi.classify.ConditionalClassification
Construct a conditional classification with the specified categories, scores and conditional probabilities which sum to one within the default tolerance of 0.01.
ConditionalClassification(String[], double[], double) - Constructor for class com.aliasi.classify.ConditionalClassification
Construct a conditional classification with the specified categories and conditional probabilities whose probabilities sum to one within the specified tolerance.
ConditionalClassification(String[], double[], double[], double) - Constructor for class com.aliasi.classify.ConditionalClassification
Construct a conditional classification with the specified categories and conditional probabilities whose probabilities sum to one within the specified tolerance.
ConditionalClassifier<E> - Interface in com.aliasi.classify
The ConditionalClassifier interface specifies a single method for n-best classification with conditional category probabilities.
ConditionalClassifierEvaluator<E> - Class in com.aliasi.classify
A ConditionalClassifierEvaluator provides an evaluation harness for conditional probability-based n-best classifiers.
ConditionalClassifierEvaluator(ConditionalClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.ConditionalClassifierEvaluator
Construct a scored classifier evaluator with the specified classifier, categories and flag indicating whether or not to store inputs.
conditionalEntropy(int) - Method in class com.aliasi.classify.ConfusionMatrix
Returns the entropy of the distribution of categories in the response given that the reference category was as specified.
conditionalEntropy() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the conditional entropy of the response distribution against the reference distribution.
conditionalOneVersusAll(String) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator
Returns a scored precision-recall evaluation of the classifcation of the specified reference category versus all other categories using the conditional probability scores.
conditionalProbability(int) - Method in class com.aliasi.classify.ConditionalClassification
Returns the conditional probability estimate for the category at the specified rank.
conditionalProbability(String) - Method in class com.aliasi.classify.ConditionalClassification
Returns the conditional probability estimate for the specified category.
confidence(double) - Method in class com.aliasi.classify.ConfusionMatrix
Returns the normal approximation of half of the binomial confidence interval for this confusion matrix for the specified z-score.
confidence95() - Method in class com.aliasi.classify.ConfusionMatrix
Returns half the width of the 95% confidence interval for this confusion matrix.
confidence99() - Method in class com.aliasi.classify.ConfusionMatrix
Returns half the width of the 99% confidence interval for this confusion matrix.
ConfidenceChunker - Interface in com.aliasi.chunk
The ConfidenceChunker interface specifies a method for returning an iterator over chunks in order of confidence.
confidenceEvaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator
Returns the scored precision-recall evaluation derived from a confidence-based chunker.
confusionMatrix() - Method in class com.aliasi.classify.BaseClassifierEvaluator
Returns the confusion matrix of first-best classification result statistics for this evaluator.
ConfusionMatrix - Class in com.aliasi.classify
An instance of ConfusionMatrix represents a quantitative comparison between two classifiers over a fixed set of categories on a number of test cases.
ConfusionMatrix(String[]) - Constructor for class com.aliasi.classify.ConfusionMatrix
Construct a confusion matrix with all zero values from the specified array of categories.
ConfusionMatrix(String[], int[][]) - Constructor for class com.aliasi.classify.ConfusionMatrix
Construct a confusion matrix with the specified set of categories and values.
confusionMatrix() - Method in class com.aliasi.spell.SpellEvaluator
Returns the confusion matrix for the current state of this evaluation.
consistentTokens(String[], String[], TokenizerFactory) - Static method in class com.aliasi.chunk.CharLmHmmChunker
 
constant(double) - Static method in class com.aliasi.stats.AnnealingSchedule
Return the annealing schedule for the specified constant learning rate.
contains(E) - Method in class com.aliasi.cluster.Dendrogram
Returns true if this dendrogram contains the specified object as a leaf.
contains(Object) - Method in class com.aliasi.util.CompactHashSet
Returns true if this set contains the specified object.
containsChar(String, char) - Static method in class com.aliasi.util.Strings
Returns true if the specified string contains an instance of the specified character.
containsDigits(char[]) - Static method in class com.aliasi.util.Strings
Returns true if at least one of the characters in the specified array is a digit.
containsKey(Object) - Method in class com.aliasi.util.BinaryMap
Returns true if this mapping contains a mapping for the specified object.
containsLetter(char[]) - Static method in class com.aliasi.util.Strings
Returns true if at least one of the characters in the specified array is a letter.
containsValue(Object) - Method in class com.aliasi.util.BinaryMap
Returns true if this map contains a mapping from some key to the specified value.
CONTENT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the content attribute.
COORDS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the coords attribute.
copheneticCorrelation(Distance<? super E>) - Method in class com.aliasi.cluster.Dendrogram
Returns the Pearson correlation coefficient between the inter-object distances and the cophenetic distances defined by this dendrogram.
copy(TrieReader, TrieWriter) - Static method in class com.aliasi.lm.BitTrieWriter
Copies the content of the specified trie reader to the specified trie writer.
copy(char[]) - Static method in class com.aliasi.util.Arrays
Return a shallow copy of the specified array that contains the same elements as the specified array.
copy(Reader, Writer) - Static method in class com.aliasi.util.Streams
Copies the content of the reader into the writer.
copy(InputStream, OutputStream) - Static method in class com.aliasi.util.Streams
Copies the content of the input stream into the output stream.
copyFile(File, File) - Static method in class com.aliasi.util.Files
Copies the contents of one file into another.
Corpus<H extends Handler> - Class in com.aliasi.corpus
The Corpus abstract class provides a basis for passing training and testing data to data handlers.
Corpus() - Constructor for class com.aliasi.corpus.Corpus
Construct a corpus.
corpusLog2JointProbability() - Method in class com.aliasi.classify.JointClassifierEvaluator
Returns the joint log (base 2) probability of the entire evaluation corpus.
corpusLog2Probability() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns an estimate of the log (base 2) likelihood of the corpus given the point estimates of topic and document multinomials determined from this sample.
correctResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of cases where the response is correct.
correlation(double[], double[]) - Static method in class com.aliasi.stats.Statistics
Returns (Pearson's) correlation coefficient between two specified arrays.
cosine(Vector) - Method in class com.aliasi.matrix.AbstractVector
Returns the cosine of this vector and the specified vector.
cosine(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
 
cosine(Vector) - Method in interface com.aliasi.matrix.Vector
Returns the cosine product of this vector with the specified vector.
CosineDistance - Class in com.aliasi.matrix
The CosineDistance class implements proximity as vector cosine.
CosineDistance() - Constructor for class com.aliasi.matrix.CosineDistance
Construct a cosine proximity.
count(int, int) - Method in class com.aliasi.classify.ConfusionMatrix
Returns the value of the cell in the matrix for the specified reference and response category indices.
count() - Method in class com.aliasi.dict.DictionaryEntry
Returns the count for this dictionary entry.
count(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter
Returns the count for the specified character sequence.
count(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
 
count(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter
Returns the count of the specified sequence of integers.
count(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
 
count(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter
Returns the count in the training corpus for the specified sequence of characters.
count(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
 
countComparator() - Method in class com.aliasi.util.ObjectToCounterMap
Returns a CountComparator that compares objects based on their counts in this object to counter map.
Counter - Class in com.aliasi.util
A reassignable integer usable for counting.
Counter() - Constructor for class com.aliasi.util.Counter
Create a counter with initial count 0.
Counter(int) - Constructor for class com.aliasi.util.Counter
Create a counter with the specified count value.
cramersV() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the value of Cramér's V statistic for this matrix.
create(String[], double[]) - Static method in class com.aliasi.classify.JointClassification
Return a joint classification given the categories and log probabilities.
create(ScoredObject<String>[]) - Static method in class com.aliasi.classify.ScoredClassification
Deprecated.
create(List<ScoredObject<String>>) - Static method in class com.aliasi.classify.ScoredClassification
Factory method which returns a scored classification from the list of scored categories.
create(String, String) - Method in class com.aliasi.coref.AbstractMentionFactory
Return a mention based on the specified phrase and entity type.
create(String, String) - Method in interface com.aliasi.coref.MentionFactory
Return a mention based on the specified phrase and entity type.
create() - Method in interface com.aliasi.util.Factory
Return an instance created by this factory.
create() - Static method in class com.aliasi.util.SmallSet
Return an empty small set.
create(F) - Static method in class com.aliasi.util.SmallSet
Return a singleton empty set containing the specified member.
create(F, F) - Static method in class com.aliasi.util.SmallSet
Return a set containing the two specified members.
create(F[]) - Static method in class com.aliasi.util.SmallSet
Return a set consisting of members drawn from the specified array of members.
create(Set<? extends F>) - Static method in class com.aliasi.util.SmallSet
Return a small set containing the members specified in the set argument.
create(F, Set<? extends F>) - Static method in class com.aliasi.util.SmallSet
Return a small set containing the member and set of members specified in the arguments.
create(Set<? extends F>, Set<? extends F>) - Static method in class com.aliasi.util.SmallSet
Return a small set containing all of the members of both specified sets.
create() - Static method in class com.aliasi.util.Tuple
Returns a zero-length tuple.
create(E) - Static method in class com.aliasi.util.Tuple
Returns a tuple of length one containing the specified object.
create(E[]) - Static method in class com.aliasi.util.Tuple
Creates a tuple from the specified array of objects.
create(E, E) - Static method in class com.aliasi.util.Tuple
Returns a new tuple representing a pair of objects.
createAttributes(String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified attribute and value.
createAttributes(String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified pair of attributes.
createAttributes(String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified tripe of attributes and values.
createAttributes(String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified four attributes and values.
createAttributes(String, String, String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified five attributes and values.
createAttributes(String, String, String, String, String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler
Create an attributes list with the specified six attributes and values.
createChunk(int, int) - Static method in class com.aliasi.chunk.ChunkFactory
Return a chunk with the specified start and end positions, with default type and score.
createChunk(int, int, String) - Static method in class com.aliasi.chunk.ChunkFactory
Return a chunk with the specified start and end positions, specified type and default score.
createChunk(int, int, double) - Static method in class com.aliasi.chunk.ChunkFactory
Return a chunk with the specified start and end positions, specified score and default type.
createChunk(int, int, String, double) - Static method in class com.aliasi.chunk.ChunkFactory
Return a chunk with the specified start and end positions, type and score.
createLogProbs(String[], double[]) - Static method in class com.aliasi.classify.ConditionalClassification
Return a conditional classification given the categories and log probabilities.
createNGramBoundary(String[], int) - Static method in class com.aliasi.classify.DynamicLMClassifier
Construct a dynamic classifier over the specified cateogries, using boundary character n-gram models of the specified order.
createNGramProcess(String[], int) - Static method in class com.aliasi.classify.DynamicLMClassifier
Construct a dynamic classifier over the specified categories, using process character n-gram models of the specified order.
createProbs(String[], double[]) - Static method in class com.aliasi.classify.ConditionalClassification
Static factory method for conditional classifications based on the specified categories and linear probability ratios.
createTokenized(String[], TokenizerFactory, int) - Static method in class com.aliasi.classify.DynamicLMClassifier
Construct a dynamic language model classifier over the specified categories using token n-gram language models of the specified order and the specified tokenizer factory for tokenization.
crf() - Method in class com.aliasi.crf.ChainCrfChunker
Returns the underlying CRF for this chunker.
crossEntropy() - Method in class com.aliasi.classify.ConfusionMatrix
The cross-entropy of the response distribution against the reference distribution.
cumulativeProbability(long, long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the cumulative probability of all outcomes between the specified bounds, inclusive.
cumulativeProbability(long, long) - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the probability that an outcome will fall in the range between the specified lower and upper bounds inclusive.
cumulativeProbabilityGreater(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the cumulative probability of all outcomes greater than or equal to the specified lower bound.
cumulativeProbabilityGreater(long) - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the probability an outcome will be greater than or equal to the specified outcome.
cumulativeProbabilityLess(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the cumulative probability of all outcomes less than or equal to the specified upper bound.
cumulativeProbabilityLess(long) - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the probability an outcome will be less than or equal to the specified outcome.
currentAttributes() - Method in class com.aliasi.xml.ElementStackFilter
Returns the attributes as specified for the current containing element.
currentElement() - Method in class com.aliasi.xml.ElementStackFilter
Returns the qualified name of the current containing element's qualified name.

D

DATA - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the data attribute.
DATETIME - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the datetime attribute.
DD - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dd.
dd() - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with no attributes.
dd(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attributes.
dd(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attribute and value.
dd(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attributes and values.
dd(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attributes and values.
dd(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dd element with the specified attributes and values.
deAccentLatin1(char) - Static method in class com.aliasi.util.Strings
Returns the equivalent de-accented character for characters in the Latin-1 (ISO-8859-1) range (0000-00FF).
deAccentLatin1(CharSequence) - Static method in class com.aliasi.util.Strings
Returns the string constructed from the specified character sequence by deaccenting each of its characters.
debug(String) - Method in class com.aliasi.io.Reporter
Utility method for debug-level reports.
DECLARE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the declare attribute.
decrementSubstrings(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Decrements all of the substrings of the specified character slice by one.
decrementUnigram(char) - Method in class com.aliasi.lm.TrieCharSeqCounter
Decrements the unigram count for the specified character.
decrementUnigram(char, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Decrements the unigram count by the specified amount for the specified character.
DEFAULT_ACCEPT_CATEGORY - Static variable in class com.aliasi.classify.BinaryLMClassifier
The default value of the category for accepting input, "true".
DEFAULT_CHUNK_SCORE - Static variable in class com.aliasi.chunk.ChunkFactory
The default chunk score, Double.NEGATIVE_INFINITY.
DEFAULT_CHUNK_TYPE - Static variable in class com.aliasi.chunk.ChunkFactory
The default chunk type, "CHUNK".
DEFAULT_DOCUMENT_BOUNDARY_TOKEN - Static variable in class com.aliasi.suffixarray.TokenSuffixArray
The default boundary token for documents.
DEFAULT_REJECT_CATEGORY - Static variable in class com.aliasi.classify.BinaryLMClassifier
The default value of the category for rejecting input, "false".
DEFAULT_SEPARATOR_CHAR - Static variable in class com.aliasi.util.Strings
The default separator character, a single space.
DEFAULT_SEPARATOR_STRING - Static variable in class com.aliasi.util.Strings
The default separator string.
DEFAULT_TEST_DIR_NAME - Static variable in class com.aliasi.corpus.DiskCorpus
The name of the default testing directory, "test".
DEFAULT_TRAIN_DIR_NAME - Static variable in class com.aliasi.corpus.DiskCorpus
The name of the default training directory, "train".
DEFER - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the defer attribute.
DEL - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element del.
del() - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with no attributes.
del(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attributes.
del(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attribute and value.
del(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attributes and values.
del(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attributes and values.
del(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an del element with the specified attributes and values.
DelegateHandler - Class in com.aliasi.xml
A DelegateHandler may be used with a delegating handler to more efficiently implement nested embeddings.
DelegateHandler(DelegatingHandler) - Constructor for class com.aliasi.xml.DelegateHandler
Construct a delegate handler that coordinates recursive delegation with the specified delegating handler.
DelegatingHandler - Class in com.aliasi.xml
A DelegatingHandler is a SAX filter that routes events to embedded handlers based on their element embedding.
DelegatingHandler(int) - Constructor for class com.aliasi.xml.DelegatingHandler
Construct a delegating handler with up to the specified maximum delegation depth.
DelegatingHandler() - Constructor for class com.aliasi.xml.DelegatingHandler
Construct a delegating handler with delegation depth 512.
deleteCost(String) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch
Returns the cost to delete the specified token.
deleteWeight(char) - Method in class com.aliasi.spell.FixedWeightEditDistance
Returns the constant weight of deleting the specified character.
deleteWeight(char) - Method in class com.aliasi.spell.WeightedEditDistance
Returns the weight of deleting the specified character.
Dendrogram<E> - Class in com.aliasi.cluster
A Dendrogram represents the result of a weighted hierarchical clustering of a set of objects.
dendrogram1() - Method in class com.aliasi.cluster.LinkDendrogram
Returns the first dendrogram in the linked dendrogram.
dendrogram2() - Method in class com.aliasi.cluster.LinkDendrogram
Returns the second dendrogram in the linked dendrogram.
DenseMatrix - Class in com.aliasi.matrix
A DenseMatrix is a matrix implementation suitable for matrices with primarily non-zero values.
DenseMatrix(int, int) - Constructor for class com.aliasi.matrix.DenseMatrix
Construct a dense matrix with the specified positive number of rows and columns.
DenseMatrix(double[][]) - Constructor for class com.aliasi.matrix.DenseMatrix
Construct a dense matrix with the specified values.
DenseVector - Class in com.aliasi.matrix
A DenseVector is a vector implementation suitable for vectors with primarily non-zero values.
DenseVector(int) - Constructor for class com.aliasi.matrix.DenseVector
Construct a dense vector with the specified number of dimensions.
DenseVector(double[]) - Constructor for class com.aliasi.matrix.DenseVector
Construct a dense vector with the specified values.
DenseVector(DenseVector) - Constructor for class com.aliasi.matrix.DenseVector
Constructs a deep copy of the specified vector.
DenseVector(Vector) - Constructor for class com.aliasi.matrix.DenseVector
Cosntruct a deep copy of the specified vector as a dense vector.
dereference() - Method in class com.aliasi.cluster.Dendrogram
Returns the top-level cluster of which this dendrogram is a member.
DFN - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dfn.
dfn() - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with no attributes.
dfn(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attributes.
dfn(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attribute and value.
dfn(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attributes and values.
dfn(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attributes and values.
dfn(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dfn element with the specified attributes and values.
dictionary() - Method in class com.aliasi.dict.ApproxDictionaryChunker
Returns the trie dictionary underlying this chunker.
Dictionary<C> - Interface in com.aliasi.dict
The Dictionary interface represents a dictionary as a set of entries.
DictionaryEntry<C> - Class in com.aliasi.dict
A DictionaryEntry provides a phrase as a string, an object-based category for the phrase, and a double-valued score.
DictionaryEntry(String, C, int, double) - Constructor for class com.aliasi.dict.DictionaryEntry
Construct a dictionary entry with the specified phrase, category, count and score.
DictionaryEntry(String, C, double) - Constructor for class com.aliasi.dict.DictionaryEntry
Construct a dictionary entry with the specified phrase, category and score, with a count of zero.
DictionaryEntry(String, C, int) - Constructor for class com.aliasi.dict.DictionaryEntry
Construct a dictionary entry with the specified phrase, category and count, with the score set to the count value.
DictionaryEntry(String, C) - Constructor for class com.aliasi.dict.DictionaryEntry
Construct a dictionary entry with the specified phrase and category, with count and score set to 1.
didYouMean(String) - Method in class com.aliasi.spell.CompiledSpellChecker
Returns a first-best hypothesis of the intended message given a received message.
didYouMean(String) - Method in interface com.aliasi.spell.SpellChecker
Returns a first-best hypothesis of the intended message given the received message.
didYouMeanNBest(String) - Method in class com.aliasi.spell.CompiledSpellChecker
Returns an iterator over the n-best spelling corrections for the specified input string.
digamma(double) - Static method in class com.aliasi.util.Math
Returns the value of the digamma function for the specified value.
DIGIT_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer
The digit category.
DIR - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dir.
dir() - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with no attributes.
dir(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attributes.
dir(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attribute and value.
dir(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attributes and values.
dir(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attributes and values.
dir(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dir element with the specified attributes and values.
DIR_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the dir attribute.
dirichletLog2Prob(double, double[]) - Static method in class com.aliasi.stats.Statistics
Returns the log (base 2) of the probability of the specified discrete distribution given the specified uniform Dirichlet with concentration parameters equal to the specified value.
dirichletLog2Prob(double[], double[]) - Static method in class com.aliasi.stats.Statistics
Returns the log (base 2) of the probability of the specified discrete distribution given the specified Dirichlet distribution concentration parameters.
DISABLED - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the disabled attribute.
DiscreteChooser - Class in com.aliasi.dca
The DiscreteChooser class implements multinomial conditional logit discrete choice analysis with variables varying over alternatives.
DiscreteChooser(Vector) - Constructor for class com.aliasi.dca.DiscreteChooser
Construct a discrete chooser with the specified coefficient vector.
DiscreteDistribution - Interface in com.aliasi.stats
A DiscreteDistribution provides a probability distribution over long integer outcomes.
DiscreteObjectChooser<E> - Class in com.aliasi.dca
A DiscreteObjectChooser provides an implementation of discrete choice analysis (DCA) over arbitrary objects using a feature extractor.
DiscreteObjectChooser(FeatureExtractor<E>, SymbolTable, DiscreteChooser) - Constructor for class com.aliasi.dca.DiscreteObjectChooser
Construct a discrete chooser based on the specified feature extractor, feature symbol table, and base chooser.
DiskCorpus<H extends Handler> - Class in com.aliasi.corpus
A DiskCorpus reads data from a specified training and test directory using a specified parser.
DiskCorpus(Parser<H>, File) - Constructor for class com.aliasi.corpus.DiskCorpus
Construct a corpus from the specified parser and data directory.
DiskCorpus(Parser<H>, File, File) - Constructor for class com.aliasi.corpus.DiskCorpus
Construct a corpus from the specified parser and training and test directories.
distance() - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer
Returns the distance function for this hierarchical clusterer.
DISTANCE - Static variable in class com.aliasi.matrix.CosineDistance
A constant for the cosine distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.CosineDistance
Returns one minus the proximity of the vectors.
DISTANCE - Static variable in class com.aliasi.matrix.EuclideanDistance
The Euclidean distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.EuclideanDistance
Returns the Euclidean distance between the specified pair of vectors.
distance(Vector, Vector) - Method in class com.aliasi.matrix.MinkowskiDistance
Returns the Minkowski distance between the specified pair of vectors.
DISTANCE - Static variable in class com.aliasi.matrix.TaxicabDistance
The taxicab distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.TaxicabDistance
Returns the taxicab distance between the specified pair of vectors.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.EditDistance
Returns the edit distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaccardDistance
Returns the Jaccard distance between the specified character sequence.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaroWinklerDistance
Returns the Jaro-Winkler distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.TfIdfDistance
Return the TF/IDF distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.WeightedEditDistance
Returns the weighted edit distance between the specified character sequences.
Distance<E> - Interface in com.aliasi.util
The Distance interface provides a general method for defining distances between two objects.
distance(E, E) - Method in interface com.aliasi.util.Distance
Returns the distance between the specified pair of objects.
distanceThreshold() - Method in class com.aliasi.dict.ApproxDictionaryChunker
Returns the maximum edit distance a string can be from a dictionary entry in order to be returned by this chunker.
DIV - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element div.
div() - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with no attributes.
div(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attributes.
div(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attribute and value.
div(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attributes and values.
div(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attributes and values.
div(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an div element with the specified attributes and values.
DL - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dl.
dl() - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with no attributes.
dl(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attributes.
dl(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attribute and value.
dl(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attributes and values.
dl(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attributes and values.
dl(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dl element with the specified attributes and values.
docEndToken(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray
Returns the index of the next token past the last token of the specified document.
docFrequency(String) - Method in class com.aliasi.spell.TfIdfDistance
Returns the number of training documents that contained the specified term.
docStartToken(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray
Returns the starting token position in the underlying token suffix array of the document with the specified identifier in the overall set of documents.
documentBoundaryToken() - Method in class com.aliasi.suffixarray.TokenSuffixArray
Returns the token used to separate documents in this suffix array.
documentLength(int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the length of the specified document in tokens.
documentNames() - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray
Returns an unmodifiable view of the set of document names in the collection.
documentText(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray
Return the text of the document with the specified name.
DocumentTokenSuffixArray - Class in com.aliasi.suffixarray
A DocumentTokenSuffixArray implements a suffix array over a collection of named documents.
DocumentTokenSuffixArray(Map<String, String>, TokenizerFactory, int, String) - Constructor for class com.aliasi.suffixarray.DocumentTokenSuffixArray
Construct a suffix array from the specified identified document collection using the specified tokenizer factory, limiting comparisons to the specified maximum suffix length and separating documents with the specified boundary token.
documentTopicCount(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the number of times the specified topic was assigned to the specified document in this sample.
documentTopicPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation
Returns the concentration value of the uniform Dirichlet prior over topic distributions for documents.
documentTopicPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the uniform Dirichlet concentration hyperparameter α for document distributions over topics from which this sample was produced.
documentTopicProb(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the estimate of the probability of the topic being assigned to a word in the specified document given the topic * assignments in this sample.
doNotEditTokens() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns an unmodifiable view of the set of tokens that will never be edited in this compiled spell checker.
dotProduct(Vector) - Method in class com.aliasi.matrix.AbstractVector
Returns the dot product (inner product) of this vector with the specified vector.
dotProduct(Vector) - Method in class com.aliasi.matrix.DenseVector
 
dotProduct(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
 
dotProduct(Vector) - Method in interface com.aliasi.matrix.Vector
Returns the dot product of this vector with the specified vector.
DotProductKernel - Class in com.aliasi.matrix
The DotProductKernel is the trivial kernel function computed by taking the dot product of the input vectors.
DotProductKernel() - Constructor for class com.aliasi.matrix.DotProductKernel
Construct a dot-product kernel.
doubleValue() - Method in class com.aliasi.util.Counter
Returns the value of this counter as a double.
DT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element dt.
dt() - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with no attributes.
dt(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attributes.
dt(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attribute and value.
dt(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attributes and values.
dt(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attributes and values.
dt(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an dt element with the specified attributes and values.
DynamicLMClassifier<L extends LanguageModel.Dynamic> - Class in com.aliasi.classify
A DynamicLMClassifier is a language model classifier that accepts training events of categorized character sequences.
DynamicLMClassifier(String[], L[]) - Constructor for class com.aliasi.classify.DynamicLMClassifier
Construct a dynamic language model classifier over the specified categories with specified language models per category and an overall category estimator.

E

edgeFeatures(int, int) - Method in class com.aliasi.crf.ChainCrfFeatures
Return the edge features for the specified input position and index of the previous tag.
editDistance() - Method in class com.aliasi.dict.ApproxDictionaryChunker
Returns the weighted edit distance for matching with this chunker.
editDistance() - Method in class com.aliasi.spell.AutoCompleter
Returns the weighted edit distance for this auto-completer.
editDistance() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the weighted edit distance for this compiled spell checker.
EditDistance - Class in com.aliasi.spell
The EditDistance class implements the standard notion of edit distance, with or without transposition.
EditDistance(boolean) - Constructor for class com.aliasi.spell.EditDistance
Construct an edit distance with or without transposition based on the specified flag.
editDistance(CharSequence, CharSequence, boolean) - Static method in class com.aliasi.spell.EditDistance
Returns the edit distance between the character sequences with or without transpositions as specified.
editDistance() - Method in class com.aliasi.spell.TrainSpellChecker
Returns the weighted edit distance (channel model) underlying this spell checker trainer.
elapsedTimeMillis() - Method in class com.aliasi.util.AbstractCommand
Return the elapsed time since the construction of this command in milliseconds.
elasticNet(double, double, boolean) - Static method in class com.aliasi.stats.RegressionPrior
Returns the elastic net prior with the specified weight on the Laplace prior, the specified scale parameter for the elastic net and a noninformative prior on the intercept (dimension 0) if the specified flag is set.
element() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the highest scoring object in this priority queue, throwing an exception if the queue is empty.
element() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the largest element in this queue according to the comparator, throwing an exception if the queue is empty.
ElementStackFilter - Class in com.aliasi.xml
Provides a SAX filter that maintains a stack of elements visited.
ElementStackFilter(DefaultHandler) - Constructor for class com.aliasi.xml.ElementStackFilter
Construct an element stack filter that delegates events to the specified handler.
ElementStackFilter() - Constructor for class com.aliasi.xml.ElementStackFilter
Construct an element stack filter without a specified handler to which to delegate events.
elevenPtInterpPrecision() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the interpolated precision at eleven recall points evenly spaced between 0 and 1.
EM - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element em.
em() - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with no attributes.
em(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attributes.
em(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attribute and value.
em(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attributes and values.
em(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attributes and values.
em(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an em element with the specified attributes and values.
emissionCache() - Method in class com.aliasi.hmm.HmmDecoder
Returns the mapping used to cache emission probabilities, or null if not caching.
emissionLm(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator
Returns the language model used for emission probabilities for the specified state.
emissionLog2Cache() - Method in class com.aliasi.hmm.HmmDecoder
Returns the mapping used to cache log (base 2) emission probabilities, or null if not caching.
emIterator(TradNaiveBayesClassifier, Factory<TradNaiveBayesClassifier>, Corpus<ObjectHandler<Classified<CharSequence>>>, Corpus<ObjectHandler<CharSequence>>, double) - Static method in class com.aliasi.classify.TradNaiveBayesClassifier
Apply the expectation maximization (EM) algorithm to train a traditional naive Bayes classifier using the specified labeled and unabled data, initial classifier and factory for creating subsequent factories.
emitLog2Prob(int, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm
Return the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm
Returns the log (base 2) of the emission estimate.
emitLog2Prob(int, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Return the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator
 
emitProb(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm
Returns an estimate the emission of the specified string by the state with the specified label.
emitProb(int, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm
Return an estimate of the likelihood of the state with the specified identifier to emit the specified string.
emitProb(int, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Return an estimate of the likelihood of the state with the specified identifier to emit the specified string.
emitProb(String, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns an estimate the emission of the specified string by the state with the specified label.
emitProb(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator
Returns the estimate of the probability of the specified string being emitted from the specified state.
empty() - Static method in class com.aliasi.util.Iterators
Returns an iterator that has no elements.
EMPTY_ATTS - Static variable in class com.aliasi.xml.SimpleElementHandler
An implementation of Attributes with no attributes.
EMPTY_CHAR_ARRAY - Static variable in class com.aliasi.util.Strings
The zero-length character array.
EMPTY_INT_ARRAY - Static variable in class com.aliasi.util.Arrays
A length 0 array of integers.
EMPTY_STRING - Static variable in class com.aliasi.util.Strings
The empty string.
EMPTY_STRING_2D_ARRAY - Static variable in class com.aliasi.util.Strings
The zero-length two-dimensional array of strings.
EMPTY_STRING_ARRAY - Static variable in class com.aliasi.util.Strings
The zero-length string array.
emTrain(TradNaiveBayesClassifier, Factory<TradNaiveBayesClassifier>, Corpus<ObjectHandler<Classified<CharSequence>>>, Corpus<ObjectHandler<CharSequence>>, double, int, double, Reporter) - Static method in class com.aliasi.classify.TradNaiveBayesClassifier
Apply the expectation maximization (EM) algorithm to train a traditional naive Bayes classifier using the specified labeled and unabled data, initial classifier and factory for creating subsequent factories, maximum number of epochs, minimum improvement per epoch, and reporter to which progress reports are sent.
ENCTYPE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the enctype attribute.
end() - Method in interface com.aliasi.chunk.Chunk
Returns the index of one past the last character in this chunk.
endBoundaryEvaluation() - Method in class com.aliasi.sentences.SentenceEvaluation
Returns a precision/recall evaluation based on the end boundaries in the reference and response cases.
endDocument() - Method in class com.aliasi.xml.GroupCharactersFilter
End the document, delegating the call to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) on any accumulated characters.
endDocument() - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
endDocument() - Method in class com.aliasi.xml.SAXWriter
Flushes the underlying character writers output to the output stream, trapping all exceptions.
endElement(String, String, String) - Method in class com.aliasi.xml.DelegatingHandler
Call is delegated to the delegate and may trigger a finish delegate callback.
endElement(String, String, String) - Method in class com.aliasi.xml.ElementStackFilter
End the specified element, popping its qualified name and attributes off the stack, and delegating the SAX event to the contained handler.
endElement(String, String, String) - Method in class com.aliasi.xml.GroupCharactersFilter
Ends the specified element, delegating the SAX event to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) to handle any accumulated characters.
endElement(String, String, String) - Method in class com.aliasi.xml.RemoveElementsFilter
Removes specified elements, passing others to the contained handler.
endElement(String, String, String) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
endElement(String, String, String) - Method in class com.aliasi.xml.SAXWriter
Prints the end element, using the qualified name.
endLog2Prob(String) - Method in class com.aliasi.hmm.AbstractHmm
Returns the log (base 2) of the end probability for the specified state.
endLog2Prob(int) - Method in class com.aliasi.hmm.AbstractHmm
Returns the log (base 2) of the end probability for the state with the specified identifier.
endLog2Prob(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the log (base 2) of the end probability for the state with the specified identifier.
endLog2Prob(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the log (base 2) of the end probability for the specified state.
endOfStream() - Method in class com.aliasi.io.BitInput
Returns true if all of the available bits have been read or if this stream has been closed.
endPrefixMapping(String) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
endPrefixMapping(String) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
endProb(String) - Method in class com.aliasi.hmm.AbstractHmm
Returns the end probability for the specified state.
endProb(int) - Method in class com.aliasi.hmm.AbstractHmm
Returns the end probability for the state with the specified identifier.
endProb(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the end probability for the state with the specified identifier.
endProb(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel
Returns the end probability for the specified state.
endProb(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator
 
endSimpleElement(String) - Method in class com.aliasi.xml.SimpleElementHandler
End an element with a null namespace, using the local name for both local and qualified names.
endSimpleElement(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler
End an element for the specified handler with a null namespace, using the local name for both local and qualified names.
enforceConsistency() - Method in class com.aliasi.chunk.BioTagChunkCodec
Returns true if this codec enforces consistency of the chunkings relative to the tokenizer factory.
EnglishMentionFactory - Class in com.aliasi.coref
A mention factory for English phrases.
EnglishMentionFactory() - Constructor for class com.aliasi.coref.EnglishMentionFactory
Constructs a new English mention factory.
EnglishStopTokenizerFactory - Class in com.aliasi.tokenizer
An EnglishStopTokenizerFactory applies an English stop list to a contained base tokenizer factory.
EnglishStopTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.EnglishStopTokenizerFactory
Construct an English stop tokenizer factory with the specified base factory.
entityToCharacter(String) - Static method in class com.aliasi.util.Sgml
Returns the character represented by the specified SGML entity, or null if the entity is undefined.
entityType() - Method in class com.aliasi.coref.AbstractMentionChain
Returns the entity type associated with this mention chain.
entityType() - Method in class com.aliasi.coref.CachedMention
Returns the type of entity recognized for this mention.
entityType() - Method in interface com.aliasi.coref.Mention
Returns the type of entity recognized for this mention.
entityType() - Method in interface com.aliasi.coref.MentionChain
Returns the entity type associated with this mention chain.
EntityTypeMatch - Class in com.aliasi.coref.matchers
Implements a matching function that returns the score specified in the constructor if the mention has the specified entity type.
EntityTypeMatch(int, String) - Constructor for class com.aliasi.coref.matchers.EntityTypeMatch
Construct an instance of an entity type matcher that returns the specified score for a match against a mention of the specified type.
entropy() - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the entropy of this distribution in bits (log 2).
entropy() - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the entropy of this distribution.
entryList() - Method in class com.aliasi.dict.AbstractDictionary
Returns all of the dictionary entries for this dictionary.
entryList() - Method in interface com.aliasi.dict.Dictionary
Returns all of the dictionary entries for this dictionary.
entrySet() - Method in class com.aliasi.util.BinaryMap
Return a set view of the mappings in this map.
entrySet() - Method in class com.aliasi.util.FastCache
Returns a snapshot of the entries in this map.
entrySet() - Method in class com.aliasi.util.HardFastCache
Returns a snapshot of the entries in this map.
epoch() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the epoch in which this sample was generated.
equal(Chunking, Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl
Returns true if the specified chunkings are equal.
equalCharSequence(CharSequence, CharSequence) - Static method in class com.aliasi.util.Strings
Return true if the two character sequences have the same length and the same characters.
equals(Object) - Method in interface com.aliasi.chunk.Chunk
Returns true if the specified object is a chunk that is equal to this chunk.
equals(Object) - Method in class com.aliasi.chunk.ChunkAndCharSeq
Returns true if the specified object is a chunk and character sequence structurally equivalent to this one.
equals(Object) - Method in interface com.aliasi.chunk.Chunking
Returns true if the specified object is a chunking equal to this one.
equals(Object) - Method in class com.aliasi.chunk.ChunkingImpl
 
equals(Object) - Method in class com.aliasi.coref.AbstractMentionChain
Returns true if the specified object is a mention chain that is equal to this mention chain.
equals(MentionChain) - Method in class com.aliasi.coref.AbstractMentionChain
Returns true if the specified mention chain is equal to this mention chain.
equals(Object) - Method in class com.aliasi.dict.DictionaryEntry
Returns true if the specified object is a dictionary object equal to this one.
equals(Object) - Method in class com.aliasi.matrix.AbstractMatrix
Return true if the specified object is a matrix of the same dimensionality with the same values.
equals(Object) - Method in class com.aliasi.matrix.AbstractVector
Returns true if the specified object is a vector with the same dimensionality and values as this vector.
equals(Object) - Method in interface com.aliasi.matrix.Matrix
Returns true if the specified object is a matrix with the same number of rows and columns and the same value in every cell as this matrix.
equals(Object) - Method in class com.aliasi.matrix.SparseFloatVector
Returns true if the specified object is a vector with the same dimensionality and values as this vector.
equals(Object) - Method in interface com.aliasi.matrix.Vector
Returns true if the specified object is a vector that has the same dimensionality and values as this vector.
equals(Object) - Method in class com.aliasi.tag.StringTagging
Returns true if the specified object is a string tagging that's structurally identical to this tagging.
equals(Object) - Method in class com.aliasi.tokenizer.Tokenization
Returns true if the specified object is a tokenization that is equal to this one.
equals(Object[], Object[]) - Static method in class com.aliasi.util.Arrays
Return true if the specified arrays are the same length and contain the same elements.
equals(Object) - Method in class com.aliasi.util.Pair
Returns true if the specified object is a pair that has objects equal to this pair's.
equals(Object) - Method in class com.aliasi.util.ScoredObject
Returns true if the specified object is a scored object with an object equal to this object's and equal scores.
equivalenceEvaluation() - Method in class com.aliasi.cluster.ClusterScore
Returns the precision-recall evaluation corresponding to equalities in the reference and response clusterings.
error(String) - Method in class com.aliasi.io.Reporter
Utility method for error-level reports.
error(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
error(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
estimate(Corpus<ObjectHandler<Tagging<F>>>, ChainCrfFeatureExtractor<F>, boolean, int, boolean, boolean, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.crf.ChainCrf
Return the CRF estimated using stochastic gradient descent with the specified prior from the specified corpus of taggings of type F pruned to the specified minimum feature count, using the specified feature extractor, automatically adding an intercept feature if the flag is true, allow unseen tag transitions as specified, using the specified training parameters for annealing, measuring convergence, and reporting the incremental results to the specified reporter.
estimate(Corpus<ObjectHandler<Chunking>>, TagChunkCodec, TokenizerFactory, ChainCrfFeatureExtractor<String>, boolean, int, boolean, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.crf.ChainCrfChunker
Return the chain CRF-based chunker estimated from the specified corpus, which is converted to a tagging corpus using the specified coder/decoder and tokenizer factory, then passed to the chain CRF estimate method along with the rest of the arguments.
estimate(Vector[][], int[], RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.dca.DiscreteChooser
Returns a discrete choice model estimated from the specified training data, prior, and learning parameters.
estimate(FeatureExtractor<F>, List<List<F>>, int[], int, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.dca.DiscreteObjectChooser
Because intercepts are ignored, they are not added to feature maps and should not be treated as noninformative in the prior.
estimate(Vector[], int[], RegressionPrior, AnnealingSchedule, Reporter, double, int, int) - Static method in class com.aliasi.stats.LogisticRegression
Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.
estimate(Vector[], Vector[], RegressionPrior, AnnealingSchedule, Reporter, double, int, int) - Static method in class com.aliasi.stats.LogisticRegression
Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.
estimate(Vector[], int[], RegressionPrior, int, LogisticRegression, AnnealingSchedule, double, int, int, int, ObjectHandler<LogisticRegression>, Reporter) - Static method in class com.aliasi.stats.LogisticRegression
Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.
estimate(Vector[], Vector[], RegressionPrior, int, LogisticRegression, AnnealingSchedule, double, int, int, int, ObjectHandler<LogisticRegression>, Reporter) - Static method in class com.aliasi.stats.LogisticRegression
Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.
estimator(int) - Method in class com.aliasi.stats.PotentialScaleReduction
Returns the estimator for the specified chain.
EuclideanDistance - Class in com.aliasi.matrix
The EuclideanDistance class implements standard Euclidean distance between vectors.
EuclideanDistance() - Constructor for class com.aliasi.matrix.EuclideanDistance
Construct a new Euclidean distance.
evaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator
Return the first-best chunking evaluation.
evaluation() - Method in class com.aliasi.sentences.SentenceEvaluator
Return the evaluation for this evaluator.
ExactDictionaryChunker - Class in com.aliasi.dict
An exact dictionary chunker extracts chunks based on exact matches of tokenized dictionary entries.
ExactDictionaryChunker(Dictionary<String>, TokenizerFactory) - Constructor for class com.aliasi.dict.ExactDictionaryChunker
Construct an exact dictionary chunker from the specified dictionary and tokenizer factory which is case sensitive and returns all matches.
ExactDictionaryChunker(Dictionary<String>, TokenizerFactory, boolean, boolean) - Constructor for class com.aliasi.dict.ExactDictionaryChunker
Construct an exact dictionary chunker from the specified dictionary and tokenizer factory, returning all matches or not as specified.
ExactPhraseMatch - Class in com.aliasi.coref.matchers
Implements a matching function that returns the score specified in the constructor if there is a match between the normal phrases of the mention and one of the mentions in the mention chain.
ExactPhraseMatch(int) - Constructor for class com.aliasi.coref.matchers.ExactPhraseMatch
Construct an instance of an exact phrase matcher that returns the specified score if there is a match.
Exceptions - Class in com.aliasi.util
Static utility methods for handling exceptions.
exponential(double, double) - Static method in class com.aliasi.stats.AnnealingSchedule
Return the exponential annealing schedule with the specified initial learning rate and exponent.
extension(File) - Static method in class com.aliasi.util.Files
Returns the suffix of the file's name, defined as the part of the name after the final period, or null if there is no period in the name.
extensionCount(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter
Returns the sum of the counts of all character sequences one character longer than the specified character slice.
extensionCount(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
 
extensionCount(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter
Returns the sum of the count of all sequences that extend the specified sequence by one integer.
extensionCount(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
 
extensionCount(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter
Returns the sum of the counts of all character sequences one character longer than the specified character sequence.
extensionCount(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
 
extract(List<E>, List<String>) - Method in interface com.aliasi.crf.ChainCrfFeatureExtractor
Return the chain CRF features for the specified list of input tokens and specified list of possible tags.

F

Factory<E> - Interface in com.aliasi.util
A Factory provides a generic interface for object creation of a specified type.
FAILURE_LABEL - Static variable in class com.aliasi.stats.BernoulliDistribution
The label for dimension zero: "failure".
falseNegative() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of false negative cases.
falseNegativeEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation
Return the set of chunks and character sequences whose end boundaries are in reference but not the response chunking.
falseNegatives(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator
Returns the list of false negative cases along with their classifications for items of the specified category.
falseNegatives() - Method in class com.aliasi.cluster.ClusterScore
Returns the set of false negative relations for this scoring.
falseNegativeSet() - Method in class com.aliasi.chunk.ChunkingEvaluation
Returns the set of false negatives.
falsePositive() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of false positive cases.
falsePositiveEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation
Return the set of chunks and character sequences whose end boundaries are in response but not the reference chunking.
falsePositives(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator
Returns the list of false positive cases along with their classifications for items of the specified category.
falsePositives() - Method in class com.aliasi.cluster.ClusterScore
Returns the set of false positive relations for this scoring.
falsePositiveSet() - Method in class com.aliasi.chunk.ChunkingEvaluation
Returns the set of false positives.
FastCache<K,V> - Class in com.aliasi.util
A FastCache is a map implemented with soft references, optimistic copy-on-write updates, and approximate count-based pruning.
FastCache(int) - Constructor for class com.aliasi.util.FastCache
Constrcut a fast cache of the specified size and default load factor.
FastCache(int, double) - Constructor for class com.aliasi.util.FastCache
Construct a fast cache of the specified size (measured in number of hash buckets) and load factor.
fatal(String) - Method in class com.aliasi.io.Reporter
Utility method for fatal-level reports.
fatalError(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
fatalError(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
featureActivationThreshold() - Method in class com.aliasi.classify.BernoulliClassifier
Returns the feature activation threshold.
featureExtractor() - Method in class com.aliasi.classify.BernoulliClassifier
Return the feature extractor for this classifier.
featureExtractor() - Method in class com.aliasi.classify.KnnClassifier
Returns the feature extractor for ths KNN classifier.
featureExtractor() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns an immutable view of the feature extractor for this classifier.
featureExtractor() - Method in class com.aliasi.classify.PerceptronClassifier
Returns the feature extractor for this perceptron.
featureExtractor() - Method in class com.aliasi.classify.TfIdfClassifierTrainer
Return the feature extractor for this classifier.
featureExtractor() - Method in class com.aliasi.cluster.KMeansClusterer
Returns the feature extractor for this clusterer.
featureExtractor() - Method in class com.aliasi.crf.ChainCrf
Return the feature extractor for this CRF.
featureExtractor() - Method in class com.aliasi.dca.DiscreteObjectChooser
Return the feature extractor for this chooser.
FeatureExtractor<E> - Interface in com.aliasi.util
A FeatureExtractor provides a method of converting generic input objects into feature vectors.
FeatureExtractorFilter<E> - Class in com.aliasi.features
A FeatureExtractorFilter contains a reference to another feature extractor.
FeatureExtractorFilter(FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.FeatureExtractorFilter
Construct a feature extractor filter from the specified feature extractor.
features(E) - Method in class com.aliasi.features.AddFeatureExtractor
 
features(E) - Method in class com.aliasi.features.CacheFeatureExtractor
 
features(CharSequence) - Method in class com.aliasi.features.ChunkerFeatureExtractor
 
features(E) - Method in class com.aliasi.features.FeatureExtractorFilter
Return the features extracted by the contained feature extractor.
Features - Class in com.aliasi.features
The Features class contains static utility classes for manipulating features.
features(E) - Method in class com.aliasi.features.InteractionFeatureExtractor
Return the interaction feature map for the specified input.
features(E) - Method in class com.aliasi.features.LengthNormFeatureExtractor
Return a length-normalized feature version of the feature vector returned by the contained vector.
features(E) - Method in class com.aliasi.features.ModifiedFeatureExtractor
Return the modified form of the feature vector produced by the base feature extractor.
features(E) - Method in class com.aliasi.features.PrefixedFeatureExtractor
Return the feature map derived by prefixing the specified prefix to the feature names extracted by the base feature extractor.
features(CharSequence) - Method in class com.aliasi.features.StringLengthFeatureExtractor
 
features(E) - Method in class com.aliasi.features.ZScoreFeatureExtractor
Return the feature map resulting from converting the feature map produced by the underlying feature extractor to z-scores.
features(CharSequence) - Method in class com.aliasi.tokenizer.TokenFeatureExtractor
Return the feature vector for the specified character sequence.
features(E) - Method in interface com.aliasi.util.FeatureExtractor
Return the feature vector for the specified input.
featureSymbolTable() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns an unmodifiable view of the symbol table used for features in this classifier.
featureSymbolTable() - Method in class com.aliasi.crf.ChainCrf
Returns an unmodifiable view of the symbol table for features for this CRF.
featureSymbolTable() - Method in class com.aliasi.dca.DiscreteObjectChooser
Returns an unmodifiable view of the feature symbol table underlying this chooser.
featureValues(String) - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns a mapping from features to their parameter values for the specified category.
FEMALE_GENDER - Static variable in class com.aliasi.coref.EnglishMentionFactory
The gender for females.
FEMALE_HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory
The set of female honorifics.
FIBONACCI_SEQUENCE - Static variable in class com.aliasi.util.Math
An array of the Fibonacci sequence up the maximum value representable as a long integer.
FIELDSET - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element fieldset.
fieldset() - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with no attributes.
fieldset(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attributes.
fieldset(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attribute and value.
fieldset(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attributes and values.
fieldset(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attributes and values.
fieldset(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an fieldset element with the specified attributes and values.
file(File, String) - Static method in class com.aliasi.io.Reporters
Return a reporter that writes to the specified file using the specified encoding.
FileExtensionFilter - Class in com.aliasi.io
A file filter that accepts all base files with a suffix with a specified value or one of a set of specified values.
FileExtensionFilter(String[], boolean) - Constructor for class com.aliasi.io.FileExtensionFilter
Deprecated.
Use the variable-length argument version FileExtensionFilter.FileExtensionFilter(boolean,String[]) instead.
FileExtensionFilter(boolean, String...) - Constructor for class com.aliasi.io.FileExtensionFilter
Create a file filter that accepts files with the specified extensions, optionally accepting directories.
FileExtensionFilter(String, boolean) - Constructor for class com.aliasi.io.FileExtensionFilter
Create a file filter that accepts files with the specified extension, optionally accepting directories.
FileExtensionFilter(String) - Constructor for class com.aliasi.io.FileExtensionFilter
Create a file filter that accepts files with the specified extension and accepts all directories.
FileExtensionFilter(String...) - Constructor for class com.aliasi.io.FileExtensionFilter
Create a file filter that accepts files with the specified extensions and accepts all directories.
FileLineReader - Class in com.aliasi.io
A FileLineReader instance represents the lines of a file.
FileLineReader(File, String) - Constructor for class com.aliasi.io.FileLineReader
Construct a new file lines iterator from the specified file using the specified character encoding, assuming no compression.
FileLineReader(File, String, boolean) - Constructor for class com.aliasi.io.FileLineReader
Construct a new file lines iterator from the specified file using the specified character encoding, uncompressing gzipped input if the compresison flag is true.
fileNameFilter() - Method in class com.aliasi.io.FileExtensionFilter
Return the file name filter corresponding to this extension filter.
Files - Class in com.aliasi.util
Static utility methods for processing files.
FILES_ONLY_FILE_FILTER - Static variable in class com.aliasi.util.Files
A file filter that accepts all normal files, as specified by File.isFile().
filter(String, Number) - Method in class com.aliasi.features.BoundedFeatureExtractor
Return the bounded value corresponding to the specified value.
filter(String, Number) - Method in class com.aliasi.features.KnownFeatureExtractor
Returns the value if the feature is in the known feature set and null otherwise.
filter(String, Number) - Method in class com.aliasi.features.ModifiedFeatureExtractor
Return the value for the specified original feature and value, or null to remove the feature altogether.
Filter(Iterator<? extends E>) - Constructor for class com.aliasi.util.Iterators.Filter
Construct a filtered iterator from the specified iterator.
filteredCharacters(char[], int, int) - Method in class com.aliasi.xml.TextContentFilter
Handle filtered character content.
filterElement(String) - Method in class com.aliasi.xml.TextContentFilter
Filter the text content of elements with the specified qualified name.
finishDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegateHandler
This method is called when this handler has finished delegating the specified element to the specified handler.
finishDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegatingHandler
This method will be called whenever the close tag for the specified element is found.
finite(String, double) - Static method in class com.aliasi.util.Exceptions
Throws an illegal argument exception if the specified value is not finite.
finiteNonNegative(String, double) - Static method in class com.aliasi.util.Exceptions
Throws an illegal argument exception if the specified value is not finite and non-negative, using the specified variable name in the report.
first() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the highest scoring object in the priority queue.
first() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the largest element in the queue.
firstCharEditCost() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the cost penalty for editing the first character in a token.
FixedWeightEditDistance - Class in com.aliasi.spell
A FixedWeightEditDistance sets constant weights for the edit operations for weighted edit distance.
FixedWeightEditDistance(double, double, double, double, double) - Constructor for class com.aliasi.spell.FixedWeightEditDistance
Construct a weighted edit distance with the specified constant weights for edits.
FixedWeightEditDistance() - Constructor for class com.aliasi.spell.FixedWeightEditDistance
Constructs an edit distance where the match weight is zero and all other weights are positive infinity.
FLOATING_POINT_EQUALS_EPSILON - Static variable in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
 
floatValue() - Method in class com.aliasi.util.Counter
Returns the value of this counter as a float.
flush() - Method in class com.aliasi.io.BitOutput
Flushes writes to the underlying output stream.
fMeasure() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the F1 measure.
fMeasure(double) - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the Fβ value for the specified β.
fMeasure(double, double, double) - Static method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the Fβ measure for a specified β, recall and precision values.
fold() - Method in class com.aliasi.corpus.XValidatingObjectCorpus
Returns the current fold.
FONT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element font.
font() - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with no attributes.
font(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attributes.
font(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attribute and value.
font(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attributes and values.
font(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attributes and values.
font(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an font element with the specified attributes and values.
FOR - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the for attribute.
forceFinalStop() - Method in class com.aliasi.sentences.HeuristicSentenceModel
Returns true if this model treats any input-final token as a stop.
FORM - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element form.
form() - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with no attributes.
form(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attributes.
form(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attribute and value.
form(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attributes and values.
form(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attributes and values.
form(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an form element with the specified attributes and values.
ForwardBackwardTagLattice<E> - Class in com.aliasi.crf
The ForwardBackwardTagLattice provides an implementation of a tag lattice based on forward, backward, transition and normalizing values.
ForwardBackwardTagLattice(List<E>, List<String>, double[][], double[][], double[][][], double) - Constructor for class com.aliasi.crf.ForwardBackwardTagLattice
Construct a log tag lattice from the specified list of tokens, list of tags in order of symbol identifier along with log forward, backward, transition and normalizing values on a log probability scale.
fowlkesMallows() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Return the Fowlkes-Mallows score.
FRAME - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element frame.
frame() - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with no attributes.
frame(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attributes.
frame(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attribute and value.
frame(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attributes and values.
frame(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attributes and values.
frame(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frame element with the specified attributes and values.
FRAME_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the frame attribute.
FRAMESET - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element frameset.
frameset() - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with no attributes.
frameset(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attributes.
frameset(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attribute and value.
frameset(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attributes and values.
frameset(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attributes and values.
frameset(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an frameset element with the specified attributes and values.
frequentTermSet(int, int) - Method in class com.aliasi.lm.TokenizedLM
Returns the most frequent n-gram terms in the training data up to the specified maximum number.
functionArgs(String, Object[]) - Static method in class com.aliasi.util.Strings
Return a string representation of a function applied to its arguments.
functionArgsList(Object[]) - Static method in class com.aliasi.util.Strings
Returns a string representation of the specified array as a function's argument list.

G

gaussian(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Gaussian prior with the specified prior variance and indication of whether the intercept is given a noninformative prior.
gaussian(double[]) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Gaussian prior with the specified priors for each dimension.
GaussianRadialBasisKernel - Class in com.aliasi.matrix
A GaussianRadialBasisKernel provides a kernel based on a Gaussian radial basis function with a fixed variance parameter.
GaussianRadialBasisKernel(double) - Constructor for class com.aliasi.matrix.GaussianRadialBasisKernel
Construct a Gaussian radial basis kernel with the specified radius of influence.
gender() - Method in class com.aliasi.coref.AbstractMentionChain
Returns the gender of this mention chain.
gender(String) - Method in class com.aliasi.coref.AbstractMentionFactory
Returns a string rerpesenting the gender entities with the specified entity type.
gender() - Method in class com.aliasi.coref.CachedMention
Returns a string representing the gender of this mention.
gender(String) - Method in class com.aliasi.coref.EnglishMentionFactory
Returns a string rerpesenting the gender entities with the specified entity type.
gender() - Method in interface com.aliasi.coref.Mention
Returns a string representing the gender of this mention.
gender() - Method in interface com.aliasi.coref.MentionChain
Returns the gender for this mention chain.
GenderKiller - Class in com.aliasi.coref.matchers
Implements a killing function that defeats a match of a mention against a mention chain with an incompatible gender.
GenderKiller() - Constructor for class com.aliasi.coref.matchers.GenderKiller
Construct a new gender killer.
get(Object) - Method in class com.aliasi.util.BinaryMap
Returns the Integer with value 1 if the specified argument is mapped to 1 by this map, and returns null otherwise.
get(Object) - Method in class com.aliasi.util.FastCache
Returns the value of the specified key or null if there is no value attached.
get(Object) - Method in class com.aliasi.util.HardFastCache
Returns the value of the specified key or null if there is no value attached.
get(int) - Method in class com.aliasi.util.Tuple
Returns the object at the specified index in the tuple.
getArgument(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the command-line argument with the specified key, or the value of the key in the default properties, or null if it does not exist.
getArgumentCreatableFile(String) - Method in class com.aliasi.util.AbstractCommand
Returns the model file specified by the command line after guaranteeing that the file can be created.
getArgumentDirectory(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a directory.
getArgumentDouble(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a double value.
getArgumentExistingNormalFile(String) - Method in class com.aliasi.util.AbstractCommand
Returns the existing normal file named by the value of the specified key.
getArgumentFile(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a file.
getArgumentInt(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to an integer value.
getArgumentLong(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a long value.
getArguments() - Method in class com.aliasi.util.AbstractCommand
Returns the complete list of command-line parameters for this abstract command.
getArray() - Method in class com.aliasi.util.CommaSeparatedValues
Returns the underlying array for this comma-separated values object.
getAttributesStack() - Method in class com.aliasi.xml.ElementStackFilter
Returns an unmodifiable view of the stack of attributes associated with the stack of elements.
getBareArgument(int) - Method in class com.aliasi.util.AbstractCommand
Returns the specified bare argument.
getCharEncoding() - Method in class com.aliasi.corpus.DiskCorpus
Returns the current character encoding, or null if none has been specified.
getClassification() - Method in class com.aliasi.classify.Classified
Return the classification of the object.
getClassification() - Method in class com.aliasi.classify.RankedClassified
Return the classification of the object.
getCount(long) - Method in class com.aliasi.stats.MultivariateEstimator
Returns the count in this estimator for the specified outcome.
getCount(String) - Method in class com.aliasi.stats.MultivariateEstimator
Returns the count for the specified outcome.
getCount(E) - Method in class com.aliasi.util.ObjectToCounterMap
Returns the current count value for the specified key.
getDecoder() - Method in class com.aliasi.chunk.HmmChunker
Returns the underlying hidden Markov model decoder for this chunker.
getDefaultJavaCharset() - Static method in class com.aliasi.util.Streams
Returns Java's canonical name of the default character set for the system's current default locale.
getDelegate(String) - Method in class com.aliasi.xml.DelegatingHandler
Returns the delegate for the specified qualified element name.
getElementStack() - Method in class com.aliasi.xml.ElementStackFilter
Returns an unmodifiable view of the stack of qualified names of elements.
getExistingArgument(String) - Method in class com.aliasi.util.AbstractCommand
Returns the same value as AbstractCommand.getArgument(String), but throws an exception if the argument does not exist.
getHandler() - Method in class com.aliasi.corpus.Parser
Returns the current content handler.
getHmm() - Method in class com.aliasi.hmm.HmmDecoder
Returns the hidden Markov model underlying this decoder.
getHmmEstimator() - Method in class com.aliasi.chunk.CharLmHmmChunker
Returns the underlying hidden Markov model estimator for this chunker estimator.
getIndex(String) - Method in class com.aliasi.classify.ConfusionMatrix
Return the index of the specified category in the list of categories, or -1 if it is not a category for this confusion matrix.
getLambdaFactor() - Method in class com.aliasi.lm.NGramProcessLM
Returns the current setting of the interpolation ratio hyperparameter.
getLastCaseReport() - Method in class com.aliasi.spell.SpellEvaluator
Returns a string-based representation of the last test case.
getLevel() - Method in class com.aliasi.io.Reporter
Return the log level for this reporter.
getMaxDistance() - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer
Returns the maximum distance for clusters in a dendrogram.
getObject() - Method in class com.aliasi.classify.Classified
Return the object that is classified.
getObject() - Method in class com.aliasi.util.ScoredObject
Returns the object attached to this scored object.
getOrAddSymbol(String) - Method in class com.aliasi.symbol.MapSymbolTable
Returns the identifier for the specified symbol, adding it to the symbol table if necessary.
getOrAddSymbol(String) - Method in interface com.aliasi.symbol.SymbolTable
Returns the identifier for the specified symbol.
getOrAddSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler
Throws an unsupported operation exception.
getOrAddSymbolInteger(String) - Method in class com.aliasi.symbol.MapSymbolTable
Returns the integer identifier for the specified symbol, adding it to the symbol table if necessary.
getOrCreateArgumentDirectory(String) - Method in class com.aliasi.util.AbstractCommand
Returns the value of the argument with the specified key converted to a directory.
getPattern() - Method in class com.aliasi.tokenizer.RegExFilteredTokenizerFactory
Returns the pattern for this regex-filtered tokenizer.
getProcessLM() - Method in class com.aliasi.lm.NGramBoundaryLM
Returns the underlying n-gram process language model for this boundary language model.
getSet(K) - Method in class com.aliasi.util.ObjectToSet
Returns the set of values for the specified key, or the empty set if there have been none added.
getSystemId() - Method in class com.aliasi.corpus.DiskCorpus
Return the system identifier for this corpus or null if none has been specified.
getText() - Method in class com.aliasi.xml.TextAccumulatorHandler
Returns the text thus far accumulated.
getTokenizerFactory() - Method in class com.aliasi.chunk.CharLmHmmChunker
Return the tokenizer factory for this chunker.
getTokenizerFactory() - Method in class com.aliasi.chunk.HmmChunker
Returns the underlying tokenizer factory for this chunker.
getValue(E) - Method in class com.aliasi.util.ObjectToDoubleMap
Returns the value of the specified key in the map.
getXMLHandler() - Method in class com.aliasi.corpus.XMLParser
Return the default handler for SAX events.
gibbsSample(int[][], short, double, double, Random) - Static method in class com.aliasi.cluster.LatentDirichletAllocation
Return an iterator over Gibbs samples for the specified document-word corpus, number of topics, priors and randomizer.
gibbsSampler(int[][], short, double, double, int, int, int, Random, ObjectHandler<LatentDirichletAllocation.GibbsSample>) - Static method in class com.aliasi.cluster.LatentDirichletAllocation
Run Gibbs sampling for the specified multinomial data, number of topics, priors, search parameters, randomization and callback sample handler.
globalEstimator() - Method in class com.aliasi.stats.PotentialScaleReduction
Returns the estimator that pools the estimates across the chains.
GOLDEN_RATIO - Static variable in class com.aliasi.util.Math
The value of the golden ratio.
gradient(double, int) - Method in class com.aliasi.stats.RegressionPrior
Returns the contribution to the gradient of the error function of the specified parameter value for the specified dimension.
GroupCharactersFilter - Class in com.aliasi.xml
Provides a SAX filter that groups sequential calls to GroupCharactersFilter.characters(char[],int,int) into a single call with all of the content concatenated.
GroupCharactersFilter(DefaultHandler) - Constructor for class com.aliasi.xml.GroupCharactersFilter
Construct a character grouping filter that delegates events to the specified handler.
GroupCharactersFilter(DefaultHandler, boolean) - Constructor for class com.aliasi.xml.GroupCharactersFilter
Construct a character grouping filter without a specified handler to which to delegate events.

H

H1 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h1.
h1() - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with no attributes.
h1(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attributes.
h1(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attribute and value.
h1(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attributes and values.
h1(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attributes and values.
h1(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h1 element with the specified attributes and values.
H2 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h2.
h2() - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with no attributes.
h2(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attributes.
h2(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attribute and value.
h2(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attributes and values.
h2(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attributes and values.
h2(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h2 element with the specified attributes and values.
H3 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h3.
h3() - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with no attributes.
h3(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attributes.
h3(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attribute and value.
h3(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attributes and values.
h3(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attributes and values.
h3(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h3 element with the specified attributes and values.
H4 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h4.
h4() - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with no attributes.
h4(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attributes.
h4(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attribute and value.
h4(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attributes and values.
h4(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attributes and values.
h4(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h4 element with the specified attributes and values.
H5 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h5.
h5() - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with no attributes.
h5(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attributes.
h5(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attribute and value.
h5(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attributes and values.
h5(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attributes and values.
h5(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h5 element with the specified attributes and values.
H6 - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element h6.
h6() - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with no attributes.
h6(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attributes.
h6(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attribute and value.
h6(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attributes and values.
h6(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attributes and values.
h6(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an h6 element with the specified attributes and values.
handle(Chunking) - Method in class com.aliasi.chunk.CharLmHmmChunker
Handle the specified chunking by tokenizing it, assigning tags and training the underlying hidden Markov model.
handle(Chunking) - Method in class com.aliasi.chunk.CharLmRescoringChunker
Trains this chunker with the specified chunking.
handle(Chunking) - Method in class com.aliasi.chunk.ChunkerEvaluator
Handle the specified reference chunking.
handle(Chunking) - Method in class com.aliasi.chunk.TrainTokenShapeChunker
Add the specified chunking as a training event.
handle(Classified<E>) - Method in class com.aliasi.classify.BaseClassifierEvaluator
Add the specified classified object to this evaluator.
handle(Classified<E>) - Method in class com.aliasi.classify.BernoulliClassifier
Handle the specified training classified object.
handle(Classified<CharSequence>) - Method in class com.aliasi.classify.BinaryLMClassifier
Train this classifier using the character sequence from the specified classified object if the best category of the classification is the accept category for this binary classifier.
handle(Classified<E>) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator
 
handle(Classified<CharSequence>) - Method in class com.aliasi.classify.DynamicLMClassifier
Provides a training instance for the specified character sequence using the best category from the specified classification.
handle(Classified<E>) - Method in class com.aliasi.classify.KnnClassifier
Handle the specified classified object as a training instance.
handle(Classified<E>) - Method in class com.aliasi.classify.RankedClassifierEvaluator
 
handle(Classified<E>) - Method in class com.aliasi.classify.ScoredClassifierEvaluator
 
handle(Classified<E>) - Method in class com.aliasi.classify.TfIdfClassifierTrainer
Handle the specified classified object as training data.
handle(Classified<CharSequence>) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Trains the classifier with the specified classified character sequence.
handle(E) - Method in interface com.aliasi.corpus.ObjectHandler
Handle the specified object.
handle(E) - Method in class com.aliasi.corpus.XValidatingObjectCorpus
Add the specified item to the end of the corpus.
handle(Tagging<String>) - Method in class com.aliasi.hmm.AbstractHmmEstimator
Train the estimator with the specified tokens, whitespaces and states.
handle(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM
Train the language model on the specified character sequence.
handle(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM
Implements the object handler interface over character sequences for training.
handle(CharSequence) - Method in class com.aliasi.lm.TokenizedLM
Trains the language model on the specified character sequence.
handle(CharSequence) - Method in class com.aliasi.lm.UniformBoundaryLM
This method for training a character sequence is supplied for compatibility with the dynamic language model interface, but is implemented to do nothing.
handle(CharSequence) - Method in class com.aliasi.lm.UniformProcessLM
This method for training a character sequence is supplied for compatibility with the dynamic language model interface, but is implemented to do nothing.
handle(Chunking) - Method in class com.aliasi.sentences.SentenceEvaluator
Handle the specified reference chunking by extracting its character sequence, producing a response chunking from the contained sentence chunker, and adding the reference and result to the evaluation.
handle(CharSequence) - Method in class com.aliasi.spell.TfIdfDistance
Add the specified character sequence as a document for training.
handle(CharSequence) - Method in class com.aliasi.spell.TrainSpellChecker
Train the spell checker on the specified character sequence.
handle(double) - Method in class com.aliasi.stats.OnlineNormalEstimator
Add the specified value to the collection of samples for this estimator.
handle(Tagging<E>) - Method in class com.aliasi.tag.MarginalTaggerEvaluator
Add a test case consisting of the specified reference tagging along with the lattice output of the marginal tagger being evaluated on the tokens of the reference tagging.
handle(Tagging<E>) - Method in class com.aliasi.tag.NBestTaggerEvaluator
Add the specified reference tagging as a test case, with a response tagging computed by the contained n-best tagger.
handle(Tagging<E>) - Method in class com.aliasi.tag.TaggerEvaluator
Add a case for the specified reference tagging using the contained tagger to generate a response tagging.
handleNGrams(int, int, ObjectHandler<String[]>) - Method in class com.aliasi.lm.TokenizedLM
Visits the n-grams of the specified length with at least the specified minimum count stored in the underlying counter of this tokenized language model and passes them to the specified handler.
handleNGrams(int, int, ObjectHandler<int[]>) - Method in class com.aliasi.lm.TrieIntSeqCounter
Supplies each n-gram of the specified length and with greater than or equal to the specified minimum count to the specified handler.
Handler - Interface in com.aliasi.corpus
The Handler marker interface indicates that a class will be implement a handle method appropriate for a particular Parser.
HardFastCache<K,V> - Class in com.aliasi.util
A HardFastCache is a map implemented with hard references, optimistic copy-on-write updates, and approximate count-based pruning.
HardFastCache(int) - Constructor for class com.aliasi.util.HardFastCache
Constrcut a fast cache of the specified size and default load factor.
HardFastCache(int, double) - Constructor for class com.aliasi.util.HardFastCache
Construct a fast cache of the specified size and load factor.
HAS_PROPERTY_VALUE - Static variable in class com.aliasi.util.AbstractCommand
The value assigned to arguments beginning with '-' and not containing an '='.
hasArgument(String) - Method in class com.aliasi.util.AbstractCommand
Returns true if there is a command-line argument specified for the key.
hasFlag(String) - Method in class com.aliasi.util.AbstractCommand
Returns true if the arguments set the specified flag.
hashCode() - Method in interface com.aliasi.chunk.Chunk
Returns this chunk's hash code.
hashCode() - Method in class com.aliasi.chunk.ChunkAndCharSeq
Returns the cached hash code for this chunk and character sequence.
hashCode() - Method in interface com.aliasi.chunk.Chunking
Returns the hash code for this chunking.
hashCode() - Method in class com.aliasi.chunk.ChunkingImpl
 
hashCode(Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl
Returns the hash code for the specified chunking.
hashCode() - Method in class com.aliasi.coref.AbstractMentionChain
Returns the hash code for this mention chain.
hashCode() - Method in class com.aliasi.dict.DictionaryEntry
Returns the hash code for this entry.
hashCode() - Method in class com.aliasi.matrix.AbstractMatrix
Returns a hash code as specified in the Matrix interface's documentation.
hashCode() - Method in class com.aliasi.matrix.AbstractVector
Returns the hash code for this vector according to the specification.
hashCode() - Method in interface com.aliasi.matrix.Matrix
Return the hash code for the matrix.
hashCode() - Method in class com.aliasi.matrix.SparseFloatVector
Returns the hash code for this sparse float vector.
hashCode() - Method in interface com.aliasi.matrix.Vector
Return the hash code for this vector.
hashCode() - Method in class com.aliasi.tag.StringTagging
Returns a hash code computed from the underlying string and tags.
hashCode() - Method in class com.aliasi.tokenizer.Tokenization
Returns the hash code for this tokenization.
hashCode() - Method in class com.aliasi.util.Pair
Returns the hash code of the pair.
hashCode() - Method in class com.aliasi.util.ScoredObject
Returns the hash code of the ScoredObject.
hashCode(CharSequence) - Static method in class com.aliasi.util.Strings
Returns a hash code for a character sequence that is equivalent to the hash code generated for a its string yield.
hashCode() - Method in class com.aliasi.util.Tuple
Returns the hash code for this list.
hasNext() - Method in class com.aliasi.util.Iterators.Buffered
Returns true if the next call to Iterators.Buffered.next() will return a non-null value.
hasNext() - Method in class com.aliasi.util.Iterators.Filter
Returns true if calls to next() will return a value.
hasNext() - Method in class com.aliasi.util.Iterators.Modifier
Returns true if the underlying iterator has more elements.
hasNext() - Method in class com.aliasi.util.Iterators.PrimitiveInt
Returns true if there is another integer in the iteration.
hasProperty(String) - Method in class com.aliasi.util.AbstractCommand
Returns true if the arguments have the specified property defined.
hasZeroDiagonal(Matrix) - Static method in class com.aliasi.matrix.Matrices
Returns true if the specified matrix has only zero values on its diagonal.
HEAD - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element head.
head() - Method in class com.aliasi.xml.XHtmlWriter
Start an head element with no attributes.
head(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an head element with the specified attributes.
head(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an head element with the specified attribute and value.
head(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an head element with the specified attributes and values.
head(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an head element with the specified attributes and values.
head(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an head element with the specified attributes and values.
HEADERS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the headers attribute.
headSet(E) - Method in class com.aliasi.util.BoundedPriorityQueue
Return the set of elements in this queue strictly less than the specified element according to the comparator for this queue.
headSet(E) - Method in class com.aliasi.util.ShortPriorityQueue
Return the set of elements in this queue strictly less than the specified element according to the comparator for this queue.
HEIGHT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the height attribute.
HeuristicSentenceModel - Class in com.aliasi.sentences
A HeuristicSentenceModel determines sentence boundaries based on sets of tokens, a pair of flags, and an overridable method describing boundary conditions.
HeuristicSentenceModel(Set<String>, Set<String>, Set<String>) - Constructor for class com.aliasi.sentences.HeuristicSentenceModel
Constructs a capitalization-sensitive heuristic sentence model with the specified set of possible stop tokens, impossible penultimate tokens, and impossible sentence start tokens.
HeuristicSentenceModel(Set<String>, Set<String>, Set<String>, boolean, boolean) - Constructor for class com.aliasi.sentences.HeuristicSentenceModel
Construct a heuristic sentence model with the specified sets of possible stop tokens, impossible penultimate tokens, impossible start tokens, and flags for whether the final token is forced to be a stop, and whether parentheses are balanced.
HiddenMarkovModel - Interface in com.aliasi.hmm
The HiddenMarkovModel interface provides a means for definining the probability estimates and symbol table underlying a hidden Markov model (HMM).
hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer
Returns the array of clusters derived from performing clustering with this class's specified maximum distance.
hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.CompleteLinkClusterer
 
hierarchicalCluster(Set<? extends E>) - Method in interface com.aliasi.cluster.HierarchicalClusterer
Return the dendrogram representing the complete hierarchical clustering of the specified elements.
hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.SingleLinkClusterer
Return the array of clusters derived from the specified distance matrix by performing single-link clustering up to the specified maximum distance bound.
HierarchicalClusterer<E> - Interface in com.aliasi.cluster
The HierarchicalClusterer interface defines a means of clustering a set of objects into a hierarchy of clusters.
HmmCharLmEstimator - Class in com.aliasi.hmm
An HmmCharLmEstimator employs a maximum a posteriori transition estimator and a bounded character language model emission estimator.
HmmCharLmEstimator() - Constructor for class com.aliasi.hmm.HmmCharLmEstimator
Construct an HMM estimator with default parameter settings.
HmmCharLmEstimator(int, int, double) - Constructor for class com.aliasi.hmm.HmmCharLmEstimator
Construct an HMM estimator with the specified maximum character n-gram size, maximum number of characters in the data, and character n-gram interpolation parameter, with no state smoothing.
HmmCharLmEstimator(int, int, double, boolean) - Constructor for class com.aliasi.hmm.HmmCharLmEstimator
Construct an HMM estimator with the specified maximum character n-gram size, maximum number of characters in the data, character n-gram interpolation parameter, and state smoothing.
HmmChunker - Class in com.aliasi.chunk
An HmmChunker uses a hidden Markov model to perform chunking over tokenized character sequences.
HmmChunker(TokenizerFactory, HmmDecoder) - Constructor for class com.aliasi.chunk.HmmChunker
Construct a chunker from the specified tokenizer factory and hidden Markov model decoder.
HmmDecoder - Class in com.aliasi.hmm
An HmmDecoder provides implementations of first-best, n-best and marginal taggers for hidden Markov models (HMMs).
HmmDecoder(HiddenMarkovModel) - Constructor for class com.aliasi.hmm.HmmDecoder
Construct an HMM decoder from the specified HMM.
HmmDecoder(HiddenMarkovModel, Map<String, double[]>, Map<String, double[]>) - Constructor for class com.aliasi.hmm.HmmDecoder
Construct an HMM decoder from the specified HMM using the specified caches for linear and log probabilities.
HmmDecoder(HiddenMarkovModel, Map<String, double[]>, Map<String, double[]>, double, double) - Constructor for class com.aliasi.hmm.HmmDecoder
Construct an HMM decoder from the specified HMM using the specified caches for linear and log probabilities, with the specified beam width for emission estimates.
HonorificConflictKiller - Class in com.aliasi.coref.matchers
Implements a killing function that defeats a match of a mention against a mention chain with an incompatible honorific.
HonorificConflictKiller() - Constructor for class com.aliasi.coref.matchers.HonorificConflictKiller
Construct a new honorific killer.
honorifics() - Method in class com.aliasi.coref.AbstractMentionChain
Returns the set of honorifics for this mention chain.
honorifics() - Method in class com.aliasi.coref.CachedMention
Returns the set of honorifics which occur in this mention.
HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory
The complete set of male, female, and generic honorifics.
honorifics() - Method in interface com.aliasi.coref.Mention
Returns the set of honorifics which occur in this mention.
honorifics() - Method in interface com.aliasi.coref.MentionChain
Honorific phrases attached to instances of this mention chain.
HR - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element hr.
hr() - Method in class com.aliasi.xml.XHtmlWriter
Start an hr element with no attributes.
hr(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an hr element with the specified attributes.
hr(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an hr element with the specified attribute and value.
hr(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an hr element with the specified attributes and values.
hr(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an hr element with the specified attributes and values.
hr(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an hr element with the specified attributes and values.
HREF - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the href attribute.
HREFLANG - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the hreflang attribute.
HTML - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element html.
html() - Method in class com.aliasi.xml.XHtmlWriter
Start an html element with no attributes.
html(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an html element with the specified attributes.
html(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an html element with the specified attribute and value.
html(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an html element with the specified attributes and values.
html(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an html element with the specified attributes and values.
html(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an html element with the specified attributes and values.
HTTP_EQUIV - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the http-equiv attribute.
HyperbolicTangentKernel - Class in com.aliasi.matrix
A HyperbolicTangentKernel provides a kernel based on the hyperbolic tangent of a dot product with fixed linear scaling.
HyperbolicTangentKernel(double, double) - Constructor for class com.aliasi.matrix.HyperbolicTangentKernel
Construct a linearly offset hyperbolic tangent kernel with the specified slope and intercept parameters.

I

I - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element i.
i() - Method in class com.aliasi.xml.XHtmlWriter
Start an i element with no attributes.
i(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an i element with the specified attributes.
i(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an i element with the specified attribute and value.
i(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an i element with the specified attributes and values.
i(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an i element with the specified attributes and values.
i(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an i element with the specified attributes and values.
ID - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the id attribute.
identifier() - Method in class com.aliasi.coref.AbstractMentionChain
Returns the unique identifier for this mention chain.
identifier() - Method in interface com.aliasi.coref.MentionChain
The unique identifier for this mention chain (within a document).
idf(String) - Method in class com.aliasi.classify.TfIdfClassifierTrainer
Returns the inverse document frequency of the specified feature.
idf(String) - Method in class com.aliasi.spell.TfIdfDistance
Return the inverse-document frequency for the specified term.
idSet() - Method in class com.aliasi.symbol.MapSymbolTable
Returns the complete set of ids in this symbol table.
idToSymbol(Integer) - Method in class com.aliasi.symbol.MapSymbolTable
Returns the symbol for the specified identifier.
idToSymbol(int) - Method in class com.aliasi.symbol.MapSymbolTable
 
idToSymbol(int) - Method in interface com.aliasi.symbol.SymbolTable
Return the symbol corresponding to the specified identifier.
idToSymbol(int) - Method in class com.aliasi.symbol.SymbolTableCompiler
Return the symbol corresponding to the specified identifier.
IFRAME - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element iframe.
iframe() - Method in class com.aliasi.xml.XHtmlWriter
Start an iframe element with no attributes.
iframe(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an iframe element with the specified attributes.
iframe(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an iframe element with the specified attribute and value.
iframe(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an iframe element with the specified attributes and values.
iframe(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an iframe element with the specified attributes and values.
iframe(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an iframe element with the specified attributes and values.
ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.DelegatingHandler
Call ignored.
ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.SAXWriter
Does not print ignorable whitespace.
illegalArgument(String, String) - Method in class com.aliasi.util.AbstractCommand
Throw an illegal argument exception with the specified message and a report of the argument found.
illegalArgument(String, Exception) - Method in class com.aliasi.util.AbstractCommand
Throw an illegal argument exception with the specified message with a source provided by the specified exception.
illegalArgument(String) - Method in class com.aliasi.util.AbstractCommand
Throw an illegal argument exception with the specified message.
illegalPropertyArgument(String, String) - Method in class com.aliasi.util.AbstractCommand
Throw an illegal argument message with the specified message and a report of the specified key and its value.
IMG - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element img.
img() - Method in class com.aliasi.xml.XHtmlWriter
Start an img element with no attributes.
img(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an img element with the specified attributes.
img(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an img element with the specified attribute and value.
img(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an img element with the specified attributes and values.
img(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an img element with the specified attributes and values.
img(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an img element with the specified attributes and values.
IN_TAG_PREFIX - Static variable in class com.aliasi.chunk.BioTagChunkCodec
Default prefix for continuation tags, "I_".
incorrectResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of cases where the response is incorrect.
increment(int, int) - Method in class com.aliasi.classify.ConfusionMatrix
Add one to the cell in the matrix for the specified reference and response category indices.
increment(String, String) - Method in class com.aliasi.classify.ConfusionMatrix
Add one to the cell in the matrix for the specified reference and response categories.
increment(double, Vector) - Method in class com.aliasi.matrix.AbstractVector
Adds the specified vector multiplied by the specified scalar to this vector.
increment(double, Vector) - Method in class com.aliasi.matrix.DenseVector
Adds the specified vector multiplied by the specified scalar to this vector.
increment(double, Vector) - Method in class com.aliasi.matrix.SparseFloatVector
This operation is not supported for sparse vectors.
increment(double, Vector) - Method in interface com.aliasi.matrix.Vector
Adds the specified vector multiplied by the specified scalar to this vector.
increment() - Method in class com.aliasi.util.Counter
Increments the current count value.
increment(int) - Method in class com.aliasi.util.Counter
Increment the count value by the specified amount.
increment(E) - Method in class com.aliasi.util.ObjectToCounterMap
Increment the value of the specified key by 1.
increment(E, int) - Method in class com.aliasi.util.ObjectToCounterMap
Increment the value of the specified key by the specified amount.
increment(E, double) - Method in class com.aliasi.util.ObjectToDoubleMap
Increment the value of the specified key by the specified increment amount.
incrementByN(int, int, int) - Method in class com.aliasi.classify.ConfusionMatrix
Add n to the cell in the matrix for the specified reference and response category indices.
incrementPrefixes(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Increments the count of all prefixes of the specified character sequence up to the maximum length specified in the constructor.
incrementPrefixes(char[], int, int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Increments the count of all prefixes of the specified character sequence up to the maximum length specified in the constructor.
incrementSequence(int[], int, int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
Increments the count for the specified slice by the specified amount.
incrementSubsequences(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
Increments the count for all subsequences of the specified integer sequence up to the specified maximum length.
incrementSubsequences(int[], int, int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
Increments the count for all subsequences of the specified integer sequence up to the specified maximum length with the specified count.
incrementSubstrings(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Increments the count of all substrings of the specified character array slice up to the maximum length specified in the constructor.
incrementSubstrings(char[], int, int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Increments by the specified count all substrings of the specified character array slice up to the maximum length specified in the constructor.
incrementSubstrings(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter
Increments the count of all substrings of the specified character sequence up to the maximum length specified in the constructor.
incrementSubstrings(CharSequence, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Increments by the specified count all substrings of the specified character sequence up to the maximum length specified in the constructor.
indent(StringBuilder, int) - Static method in class com.aliasi.util.Strings
Appends an ``indentation'' to the specified string buffer, consisting of a newline character and the specified number of space characters to the specified string buffer.
IndoEuropeanSentenceModel - Class in com.aliasi.sentences
An IndoEuropeanSentenceModel is a heuristic sentence designed primarily for English.
IndoEuropeanSentenceModel() - Constructor for class com.aliasi.sentences.IndoEuropeanSentenceModel
Construct an Indo-European sentence model that does not force the final token to be a stop and does not balance parentheses.
IndoEuropeanSentenceModel(boolean, boolean) - Constructor for class com.aliasi.sentences.IndoEuropeanSentenceModel
Construct an Indo-European sentence model that forces final tokens and balances parentheses according to the specified flags.
IndoEuropeanTokenCategorizer - Class in com.aliasi.tokenizer
A IndoEuropeanTokenCategorizer is a generic token categorizer for Indo-European languages that is based on character "shape".
IndoEuropeanTokenizerFactory - Class in com.aliasi.tokenizer
An IndoEuropeanTokenizerFactory creates tokenizers with built-in support for alpha-numerics, numbers, and other common constructs in Indo-European langauges.
IndoEuropeanTokenizerFactory() - Constructor for class com.aliasi.tokenizer.IndoEuropeanTokenizerFactory
Construct a tokenizer for Indo-European languages.
info(String) - Method in class com.aliasi.io.Reporter
Utility method for info-level reports.
infrequentTermSet(int, int) - Method in class com.aliasi.lm.TokenizedLM
Returns the least frequent n-gram terms in the training data up to the specified maximum number.
INPUT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element input.
input() - Method in class com.aliasi.xml.XHtmlWriter
Start an input element with no attributes.
input(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an input element with the specified attributes.
input(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an input element with the specified attribute and value.
input(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an input element with the specified attributes and values.
input(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an input element with the specified attributes and values.
input(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an input element with the specified attributes and values.
inputSizeHistogram() - Method in class com.aliasi.tag.TaggerEvaluator
Returns a mapping from integers to the number of test cases with that many tokens.
InputSourceParser<H extends Handler> - Class in com.aliasi.corpus
An InputSourceParser is an abstract parser based on an abstract method for parsing from an input source.
InputSourceParser() - Constructor for class com.aliasi.corpus.InputSourceParser
Construct an input source parser with no specified handler.
InputSourceParser(H) - Constructor for class com.aliasi.corpus.InputSourceParser
Construct an input source parser with the specified handler.
INS - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element ins.
ins() - Method in class com.aliasi.xml.XHtmlWriter
Start an ins element with no attributes.
ins(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an ins element with the specified attributes.
ins(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an ins element with the specified attribute and value.
ins(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an ins element with the specified attributes and values.
ins(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an ins element with the specified attributes and values.
ins(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an ins element with the specified attributes and values.
insertCost(String) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch
Returns the cost to insert the specified token.
insertWeight(char) - Method in class com.aliasi.spell.FixedWeightEditDistance
Returns the constant weight of inserting the specified character.
insertWeight(char) - Method in class com.aliasi.spell.WeightedEditDistance
Returns the weight of inserting the specified character.
INSTANCE - Static variable in class com.aliasi.sentences.MedlineSentenceModel
A single instance which may be used anywhere a MEDLINE sentence model is needed.
INSTANCE - Static variable in class com.aliasi.tokenizer.CharacterTokenizerFactory
An instance of a character tokenizer factory, which may be used wherever a character tokenizer factory is needed.
INSTANCE - Static variable in class com.aliasi.tokenizer.IndoEuropeanTokenizerFactory
The singleton instance of an Indo-European tokenizer factory.
INSTANCE - Static variable in class com.aliasi.tokenizer.LineTokenizerFactory
A reusable instance of this class.
intArray(int[]) - Static method in class com.aliasi.util.Iterators
Returns an iterator over the array of primitive integers specified.
integersFollowing(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter
Returns an array of the integers that follow the specified integer array slice.
integersFollowing(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
 
InteractionFeatureExtractor<E> - Class in com.aliasi.features
An InteractionFeatureExtractor produces interaction features between two feature extractors.
InteractionFeatureExtractor(String, String, FeatureExtractor<E>, FeatureExtractor<E>) - Constructor for class com.aliasi.features.InteractionFeatureExtractor
Construct a feature extractor for interactions between the features extracted by the specified extractors, creating new features with the specified prefix and separator.
InteractionFeatureExtractor(String, String, FeatureExtractor<E>) - Constructor for class com.aliasi.features.InteractionFeatureExtractor
Construct a feature extractor for interactions between the features extracted by the specified extractor, creating new features with the specified prefix and separator.
INTERCEPT_FEATURE_NAME - Static variable in class com.aliasi.classify.LogisticRegressionClassifier
The name of the feature used for intercepts, *&^INTERCEPT%$^&**.
intRange(int) - Static method in class com.aliasi.util.Iterators
Construct an Integer iterator from 0 (inclusive) the specified end point (exclusive).
intRange(int, int) - Static method in class com.aliasi.util.Iterators
Returns a newly constructed primitive integer iterator that iterates from the start (inclusive) to end (exclusive).
IntSeqCounter - Interface in com.aliasi.lm
An IntSeqCounter provides counts for sequences of integers.
intValue() - Method in class com.aliasi.util.Counter
Returns the value of this counter as an int.
inverse(double, double) - Static method in class com.aliasi.stats.AnnealingSchedule
Return the inverse annealing schedule with the specified initial learning rate and annealing rate.
IoTagChunkCodec - Class in com.aliasi.chunk
The IoTagChunkCodec implements a chunk to tag coder/decoder based on the IO encoding scheme and a specified tokenizer factory.
IoTagChunkCodec() - Constructor for class com.aliasi.chunk.IoTagChunkCodec
Construct an IO-encoding based tag-chunk coder with a null tokenizer factory that does not enforce cons.
IoTagChunkCodec(TokenizerFactory, boolean) - Constructor for class com.aliasi.chunk.IoTagChunkCodec
Construct an IO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and taggings if the specified flag is set.
isDebugEnabled() - Method in class com.aliasi.io.Reporter
Returns true if this reporter is enabled at the debug level.
isDecodable(StringTagging) - Method in interface com.aliasi.chunk.TagChunkCodec
Returns true if the specified tagging may be decoded as a chunking then encoded back to the original tagging accurately.
isEmpty() - Method in class com.aliasi.util.BinaryMap
Returns true if this mapping is empty.
isEmpty() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns true if this bounded priority queue has no elements.
isEmpty() - Method in class com.aliasi.util.ShortPriorityQueue
Returns true if the queue is empty.
isEnabled(LogLevel) - Method in class com.aliasi.io.Reporter
Returns true if the specified level is at least as severe as the level specified by this reporter.
isEncodable(Chunking) - Method in interface com.aliasi.chunk.TagChunkCodec
Returns true if the specified chunking may be encoded as a tagging then decoded back to the original chunking accurately.
isErrorEnabled() - Method in class com.aliasi.io.Reporter
Returns true if this reporter is enabled at the error level.
isFatalEnabled() - Method in class com.aliasi.io.Reporter
Returns true if this reporter is enabled at the fatal level.
isHonorific(String) - Method in class com.aliasi.coref.AbstractMentionFactory
Returns true if the specified token is an honorific.
isHonorific(String) - Method in class com.aliasi.coref.EnglishMentionFactory
 
isInfoEnabled() - Method in class com.aliasi.io.Reporter
Returns true if this reporter is enabled at the info level.
isKnownToken(String) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns true if the token has been seen in training data.
isLegalUtf16(CharSequence) - Static method in class com.aliasi.util.Strings
Returns true if the specified character sequence is a valid sequence of UTF-16 char values.
ISMAP - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the ismap attribute.
isNonNegative(Matrix) - Static method in class com.aliasi.matrix.Matrices
Returns true if the matrix contains only positive numbers or zeros.
isort(int[], Sort.CompareInt) - Static method in class com.aliasi.util.Sort
Sort the specified array of integers according to the specified comparator using insertion sort.
isPrime(int) - Static method in class com.aliasi.util.Math
Returns true if the specified number is prime.
isPronominal(String) - Method in class com.aliasi.coref.AbstractMentionFactory
Returns true if the specified entity type is a pronominal type.
isPronominal() - Method in class com.aliasi.coref.CachedMention
Returns true if this mention is a pronoun.
isPronominal(String) - Method in class com.aliasi.coref.EnglishMentionFactory
Returns true if the specified entity type is a pronominal type.
isPronominal() - Method in interface com.aliasi.coref.Mention
Returns true if this mention is a pronoun.
isPunctuation(char) - Static method in class com.aliasi.util.Strings
Returns true if specified character is a punctuation character.
isSymmetric(Matrix) - Static method in class com.aliasi.matrix.Matrices
Returns true if the specified matrix is symmetric.
isTraceEnabled() - Method in class com.aliasi.io.Reporter
Returns true if this reporter is enabled at the trace level.
isUniform() - Method in class com.aliasi.stats.RegressionPrior
Returns true if this prior is the uniform distribution.
isWarnEnabled() - Method in class com.aliasi.io.Reporter
Returns true if this reporter is enabled at the warn level.
isWhitespace(char) - Static method in class com.aliasi.util.Strings
Returns true if specified character is a whitespace character.
itemView() - Method in class com.aliasi.corpus.XValidatingObjectCorpus
Returns a cross-validating corpus whose items are an immutable view of the items in this corpus, but whose number of folds or fold may be changed.
iterator() - Method in class com.aliasi.chunk.ChunkingImpl
Returns an unmodifiable iterator over the chunk set underlying this chunking implementation.
iterator() - Method in class com.aliasi.dict.MapDictionary
Return an iterator over the dictionary entries in this dictionary.
iterator() - Method in class com.aliasi.dict.TrieDictionary
Returns an iterator over all of the dictionary entries for this dictioniary.
iterator() - Method in class com.aliasi.io.FileLineReader
Returns an iterator over the remaining lines of the file.
iterator() - Method in class com.aliasi.tokenizer.Tokenizer
Returns an iterator over the tokens remaining in this tokenizer.
iterator() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns an iterator over the elements in this bounded priority queue.
iterator() - Method in class com.aliasi.util.CompactHashSet
Returns an iterator over the elements in this set.
iterator() - Method in class com.aliasi.util.MinMaxHeap
Returns an iterator over this heap.
iterator() - Method in class com.aliasi.util.ShortPriorityQueue
Returns an iterator over the elements in this queue.
Iterators - Class in com.aliasi.util
Static utility methods, classes, and abstract classes for iteration.
Iterators.Buffered<E> - Class in com.aliasi.util
An Iterators.Buffered uses a single method to return objects, buffering the result and returning it as the next element if it is non-null.
Iterators.Filter<E> - Class in com.aliasi.util
An Iterators.Filter filters the stream of objects returned by another iterator by subjecting them to an acceptance test.
Iterators.Modifier<E> - Class in com.aliasi.util
An Iterator.Modifier uses a single abstract method to operate on the elements returned by an underlying iterator to return modified objects.
Iterators.PrimitiveInt - Class in com.aliasi.util
A Iterators.PrimitiveInt is an integer iterator that also allows objects to be accessed as primitive int values.

J

jaccardCoefficient() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the Jaccard coefficient.
JaccardDistance - Class in com.aliasi.spell
The JaccardDistance class implements a notion of distance based on token overlap.
JaccardDistance(TokenizerFactory) - Constructor for class com.aliasi.spell.JaccardDistance
Construct an instance of Jaccard string distance using the specified tokenizer factory.
JARO_DISTANCE - Static variable in class com.aliasi.spell.JaroWinklerDistance
A constant for the Jaro distance.
JARO_WINKLER_DISTANCE - Static variable in class com.aliasi.spell.JaroWinklerDistance
A constant for the Jaro-Winkler distance with defaults set as in Winkler's papers.
JaroWinklerDistance - Class in com.aliasi.spell
The JaroWinklerDistance class implements the original Jaro string comparison as well as Winkler's modifications.
JaroWinklerDistance() - Constructor for class com.aliasi.spell.JaroWinklerDistance
Construct a basic Jaro string distance without the Winkler modifications.
JaroWinklerDistance(double, int) - Constructor for class com.aliasi.spell.JaroWinklerDistance
Construct a Winkler-modified Jaro string distance with the specified weight threshold for refinement and an initial number of characters over which to reweight.
JointClassification - Class in com.aliasi.classify
A JointClassification is a conditional classification derived from a joint probability assignment to each category and the object being classified.
JointClassification(String[], double[]) - Constructor for class com.aliasi.classify.JointClassification
Construct a joint classification with the specified parallel arrays of categories and log (base 2) joint probabilities of category and input object.
JointClassification(String[], double[], double[]) - Constructor for class com.aliasi.classify.JointClassification
Construct a joint classification with the specified parallel arrays of categories and log (base 2) joint probabilities of category and input object.
JointClassifier<E> - Interface in com.aliasi.classify
The JointClassifier interface specifies a single method for n-best classification with joint input and category probabilities.
JointClassifierEvaluator<E> - Class in com.aliasi.classify
A JointClassifierEvaluator provides an evaluation harness for joint probability-based n-best classifiers.
JointClassifierEvaluator(JointClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.JointClassifierEvaluator
Construct a scored classifier evaluator with the specified classifier, categories and flag indicating whether or not to store inputs.
jointEntropy() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the entropy of the joint reference and response distribution as defined by the underlying matrix.
jointLog2Probability(int) - Method in class com.aliasi.classify.JointClassification
Returns the log (base 2) probability of the category at the specified rank.
jsDivergence(double[], double[]) - Static method in class com.aliasi.stats.Statistics
Return the Jenson-Shannon divergence between the specified multinomial distributions.

K

k() - Method in class com.aliasi.classify.KnnClassifier
Returns the number K of neighbors used by this K-nearest neighbors classifier.
kappa() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the value of the kappa statistic with chance agreement determined by the reference distribution.
kappa() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the value of the kappa statistic.
kappa(double, double) - Static method in class com.aliasi.stats.Statistics
Returns the value of the kappa statistic for the specified observed and expected probabilities.
kappaNoPrevalence() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the value of the kappa statistic adjusted for prevalence.
kappaNoPrevalence() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the value of the kappa statistic adjusted for prevalence.
kappaUnbiased() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the value of the kappa statistic adjusted for bias.
kappaUnbiased() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the value of the unbiased kappa statistic.
KBD - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element kbd.
kbd() - Method in class com.aliasi.xml.XHtmlWriter
Start an kbd element with no attributes.
kbd(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an kbd element with the specified attributes.
kbd(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an kbd element with the specified attribute and value.
kbd(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an kbd element with the specified attributes and values.
kbd(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an kbd element with the specified attributes and values.
kbd(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an kbd element with the specified attributes and values.
kernelFunction() - Method in class com.aliasi.classify.PerceptronClassifier
Returns the kernel function for this perceptron.
KernelFunction - Interface in com.aliasi.matrix
A KernelFunction computes real-valued proximities between vectors.
keySet() - Method in class com.aliasi.util.BinaryMap
Returns the set of keys mapping to 1.
keysOrderedByCount() - Method in class com.aliasi.util.ObjectToCounterMap
Returns the array of keys for this object to counter map sorted in decreasing order of their value counts.
keysOrderedByCountList() - Method in class com.aliasi.util.ObjectToCounterMap
Returns a list of keys for this object to counter map sorted in descending order of count.
keysOrderedByValueList() - Method in class com.aliasi.util.ObjectToDoubleMap
Returns the list of keys ordered in decreasing order of value.
kill(Mention, MentionChain) - Method in interface com.aliasi.coref.Killer
Return true if the match between mention and mention chain should be excluded.
kill(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.GenderKiller
Returns true if the specified mention and mention chain have incompatible genders.
kill(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.HonorificConflictKiller
Returns true if the specified mention and mention chain have incompatible honorifics.
killed(Mention) - Method in class com.aliasi.coref.AbstractMentionChain
Returns true if there is a killing function that defeats the match of the mention against the mention chain.
killed(Mention) - Method in interface com.aliasi.coref.MentionChain
Returns true if there is a killing function that defeats the match of the mention against the mention chain.
Killer - Interface in com.aliasi.coref
An implementation of the killing interface provides a way of defeating a match between a mention and a mention chain.
killers() - Method in class com.aliasi.coref.AbstractMentionChain
The killing functions defined for this mention chain.
killers() - Method in class com.aliasi.coref.MentionChainImpl
The killing functions defined for this mention chain.
klDivergence() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the Kullback-Liebler (KL) divergence between the reference and response distributions.
klDivergence(double[], double[]) - Static method in class com.aliasi.stats.Statistics
Returns the Kullback-Leibler divergence of the second specified multinomial relative to the first.
klDivergenceDirichlet(double[], double[]) - Static method in class com.aliasi.stats.Statistics
Returns the Kullback-Leibler divergence of the second specified Dirichlet distribution relative to the first.
KMeansClusterer<E> - Class in com.aliasi.cluster
A KMeansClusterer provides an implementation of k-means(++) clustering based on vectors constructed by feature extractors.
KMeansClusterer(FeatureExtractor<E>, int, int, boolean, double) - Constructor for class com.aliasi.cluster.KMeansClusterer
Construct a k-means clusterer with the specified feature extractor, number of clusters, minimum improvement per cluster, using either traditional or k-means++ initialization.
KnnClassifier<E> - Class in com.aliasi.classify
A KnnClassifier implements k-nearest-neighor classification based on feature extraction and a vector proximity or distance.
KnnClassifier(FeatureExtractor<? super E>, int) - Constructor for class com.aliasi.classify.KnnClassifier
Construct a k-nearest-neighbor classifier based on the specified feature extractor and using the specified number of neighbors.
KnnClassifier(FeatureExtractor<? super E>, int, Distance<Vector>) - Constructor for class com.aliasi.classify.KnnClassifier
Construct a k-nearest-neighbor classifier based on the specified feature extractor, specified maximum number of neighbors, and specified distance function.
KnnClassifier(FeatureExtractor<? super E>, int, Proximity<Vector>, boolean) - Constructor for class com.aliasi.classify.KnnClassifier
Construct a k-nearest-neighbor classifier based on the specified feature extractor, specified maximum number of neighbors, specified proximity function, and boolean flag indicating whether or not to weight nearest neighbors by proximity during classification.
KnownFeatureExtractor<E> - Class in com.aliasi.features
A KnownFeatureExtractor restricts a base feature extractor to features contained in a set provided at construction time.
KnownFeatureExtractor(FeatureExtractor<? super E>, Set<String>) - Constructor for class com.aliasi.features.KnownFeatureExtractor
Construct a known feature extractor based on the specified feature set and base extractor.
knownFeatures() - Method in class com.aliasi.features.ZScoreFeatureExtractor
Returns an unmodifiable view of the known features for this z-score feature extractor.
knownFeatureSet() - Method in class com.aliasi.features.KnownFeatureExtractor
Returns and unmodifiable view of the known feature set for this known feature extractor.
knownTokenEditCost() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the cost penalty for editing a character in a known token.
knownTokenSet() - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns an unmodifiable view of the set of tokens.

L

label(long) - Method in class com.aliasi.stats.BernoulliDistribution
Returns the failure label for outcome zero, and the success label for outcome one.
label(long) - Method in class com.aliasi.stats.MultivariateConstant
 
label(long) - Method in class com.aliasi.stats.MultivariateDistribution
Return the label for the specified outcome.
label(long) - Method in class com.aliasi.stats.MultivariateEstimator
Return the label for the specified outcome.
LABEL - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element label.
label() - Method in class com.aliasi.xml.XHtmlWriter
Start an label element with no attributes.
label(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an label element with the specified attributes.
label(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an label element with the specified attribute and value.
label(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an label element with the specified attributes and values.
label(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an label element with the specified attributes and values.
label(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an label element with the specified attributes and values.
LABEL_ATT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the label attribute.
lambdaA() - Method in class com.aliasi.classify.ConfusionMatrix
Returns Goodman and Kruskal's λA index of predictive association.
lambdaB() - Method in class com.aliasi.classify.ConfusionMatrix
Returns Goodman and Kruskal's λB index of predictive association.
lambdaFactor() - Method in class com.aliasi.lm.TokenizedLM
Returns the interpolation ratio, or lambda factor, for interpolating in this tokenized language model.
LANG - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the lang attribute.
languageModel(String) - Method in class com.aliasi.classify.LMClassifier
Returns the language model for the specified category.
LanguageModel - Interface in com.aliasi.lm
A LanguageModel provides an estimate of the probability of a sequence of characters.
languageModel() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the compiled language model for this spell checker.
languageModel() - Method in class com.aliasi.spell.TrainSpellChecker
Returns the n-gram process language model (source model) underlying this spell checker trainer.
LanguageModel.Conditional - Interface in com.aliasi.lm
A LanguageModel.Conditional is a language model that implements conditional estimates of characters given previous characters.
LanguageModel.Dynamic - Interface in com.aliasi.lm
A LanguageModel.Dynamic accepts training events in the form of character slices or sequences.
LanguageModel.Process - Interface in com.aliasi.lm
A LanguageModel.Process is normalized by length.
LanguageModel.Sequence - Interface in com.aliasi.lm
A LanguageModel.Sequence is normalized over all character sequences.
LanguageModel.Tokenized - Interface in com.aliasi.lm
A LanguageModel.Tokenized provides a means of estimating the probability of a sequence of tokens.
laplace(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Laplace prior with the specified prior variance and number of dimensions and indication of whether the intecept dimension is given a noninformative prior.
laplace(double[]) - Static method in class com.aliasi.stats.RegressionPrior
Returns the Laplace prior with the specified prior variances for the dimensions.
largestWithoutGoingOver(int[], int) - Static method in class com.aliasi.suffixarray.DocumentTokenSuffixArray
Given an increasing array of values and a specified value, return the largest index into the array such that the array's value at the index is smaller than or equal to the specified value.
last() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the lowest scoring object in the priority queue, or null if the queue is empty.
last() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the smallest element in the queue.
lastCaseToString(int) - Method in class com.aliasi.sentences.SentenceEvaluation
Returns a formatted listing for the last case that was evaluated, showing the underlying character sequence for the chunkings, annotated with the sentence boundaries from the reference and response chunking, with linebreaks inserted every lineLength characters.
lastCaseToString(int) - Method in class com.aliasi.tag.MarginalTaggerEvaluator
 
lastCaseToString(int) - Method in class com.aliasi.tag.NBestTaggerEvaluator
Return a string-based representation of the last case evaluated.
lastCaseToString(Set<E>) - Method in class com.aliasi.tag.TaggerEvaluator
Return a string-based representation of the last case to be evaluated based on the specified known token set.
lastConfidenceCaseReport() - Method in class com.aliasi.chunk.ChunkerEvaluator
Returns a string-based representation of the last evaluation case's confidence evaluation.
lastFirstBestCaseReport() - Method in class com.aliasi.chunk.ChunkerEvaluator
Returns a string-based representation of the last evaluation case and the first-best result.
lastNBestCaseReport() - Method in class com.aliasi.chunk.ChunkerEvaluator
Returns a string-based representation of the last n-best evaluation case.
lastTokenEndPosition() - Method in class com.aliasi.tokenizer.Tokenizer
Returns the offset of one position past the last character of the most recently returned token (optional operation).
lastTokenStartPosition() - Method in class com.aliasi.tokenizer.Tokenizer
Returns the offset of the first character of the most recently returned token (optional operation).
LatentDirichletAllocation - Class in com.aliasi.cluster
A LatentDirichletAllocation object represents a latent Dirichlet allocation (LDA) model.
LatentDirichletAllocation(double, double[][]) - Constructor for class com.aliasi.cluster.LatentDirichletAllocation
Construct a latent Dirichelt allocation (LDA) model using the specified document-topic prior and topic-word distributions.
LatentDirichletAllocation.GibbsSample - Class in com.aliasi.cluster
The LatentDirichletAllocation.GibbsSample class encapsulates all of the information related to a single Gibbs sample for latent Dirichlet allocation (LDA).
Latin1 - Static variable in class com.aliasi.util.Strings
String representing the Latin1 encoding for characters.
lda() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns a latent Dirichlet allocation model corresponding to this sample.
LeafDendrogram<E> - Class in com.aliasi.cluster
A LeafDendrogram represents a dendrogram consisting of a single object with link cost of 0.0.
LeafDendrogram(E) - Constructor for class com.aliasi.cluster.LeafDendrogram
Construct a leaf dendrogram containing the specified object.
learningRate(int) - Method in class com.aliasi.stats.AnnealingSchedule
Return the learning rate for the specified epoch.
leastSignificantBits(long, int) - Static method in class com.aliasi.io.BitOutput
Returns the specified number of the least significant bits of the specified long value as a long.
leftSingularVectors() - Method in class com.aliasi.matrix.SvdMatrix
Returns a matrix in which the left singular vectors make up the columns.
legalTags(String...) - Method in class com.aliasi.chunk.BioTagChunkCodec
 
legalTags(String...) - Method in class com.aliasi.chunk.IoTagChunkCodec
 
legalTags(String...) - Method in interface com.aliasi.chunk.TagChunkCodec
Returns true if the specified sequence of tags is a complete legal tag sequence.
legalTagSubSequence(String...) - Method in class com.aliasi.chunk.BioTagChunkCodec
 
legalTagSubSequence(String...) - Method in class com.aliasi.chunk.IoTagChunkCodec
 
legalTagSubSequence(String...) - Method in interface com.aliasi.chunk.TagChunkCodec
Returns true if the specified sequence of tags is a legal subsequence of tags.
LEGEND - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element legend.
legend() - Method in class com.aliasi.xml.XHtmlWriter
Start an legend element with no attributes.
legend(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an legend element with the specified attributes.
legend(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an legend element with the specified attribute and value.
legend(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an legend element with the specified attributes and values.
legend(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an legend element with the specified attributes and values.
legend(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an legend element with the specified attributes and values.
length() - Method in class com.aliasi.matrix.AbstractVector
Returns the length of this vector.
length() - Method in class com.aliasi.matrix.SparseFloatVector
 
length() - Method in interface com.aliasi.matrix.Vector
Returns the length of this vector.
lengthNorm() - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns the length normalization factor for this classifier.
LengthNormFeatureExtractor<E> - Class in com.aliasi.features
A LengthNormFeatureExtractor converts feature vectors produced by a contained extractor into unit length vectors.
LengthNormFeatureExtractor(FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.LengthNormFeatureExtractor
Construct a length-normalized feature extractor from the specified extractor.
lessThan(int, int) - Method in interface com.aliasi.util.Sort.CompareInt
Return true if the first argument is strictly less than the secon under this comparator's sorting.
LETTER_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer
The letter category.
LI - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element li.
li() - Method in class com.aliasi.xml.XHtmlWriter
Start an li element with no attributes.
li(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an li element with the specified attributes.
li(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an li element with the specified attribute and value.
li(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an li element with the specified attributes and values.
li(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an li element with the specified attributes and values.
li(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an li element with the specified attributes and values.
linearRegression(double[], double[]) - Static method in class com.aliasi.stats.Statistics
Returns a two-element array of lineary regression coefficients for the specified x and y values.
LineTaggingParser - Class in com.aliasi.tag
Provides a means of generating a parser for taggings based on a extracting zone boundaries and token/tag pairs from lines of data using regular expressions.
LineTaggingParser(String, int, int, String, String) - Constructor for class com.aliasi.tag.LineTaggingParser
Construct a regular expression tagging parser from the specified regular expressions and indexes.
LineTokenizerFactory - Class in com.aliasi.tokenizer
A LineTokenizerFactory treats each line of an input as a token.
LINK - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element link.
link() - Method in class com.aliasi.xml.XHtmlWriter
Start an link element with no attributes.
link(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an link element with the specified attributes.
link(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an link element with the specified attribute and value.
link(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an link element with the specified attributes and values.
link(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an link element with the specified attributes and values.
link(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an link element with the specified attributes and values.
LinkDendrogram<E> - Class in com.aliasi.cluster
A LinkDendrogram consists of a pair of sub-dendrograms which are joined at a specified cost.
LinkDendrogram(Dendrogram<E>, Dendrogram<E>, double) - Constructor for class com.aliasi.cluster.LinkDendrogram
Construct a link dendrogram containing the specified object.
list(E...) - Static method in class com.aliasi.util.Iterators
Returns an iterator constructed from the specified variable length argument list of objects.
ListCorpus<E> - Class in com.aliasi.corpus
A ListCorpus implements a corpus based on a list of training and test cases.
ListCorpus() - Constructor for class com.aliasi.corpus.ListCorpus
Construct a list-based corpus with no entries.
LMClassifier<L extends LanguageModel,M extends MultivariateDistribution> - Class in com.aliasi.classify
An LMClassifier performs joint probability-based classification of character sequences into non-overlapping categories based on language models for each category and a multivariate distribution over categories.
LMClassifier(String[], L[], M) - Constructor for class com.aliasi.classify.LMClassifier
Construct a joint classifier for character sequences classifying over a specified set of categories, with a multivariate distribution over those categories and a language model per category.
LN_2 - Static variable in class com.aliasi.util.Math
The natural logarithm of 2.
locale() - Method in class com.aliasi.tokenizer.LowerCaseTokenizerFactory
Return the locale for this factory.
log2(double) - Static method in class com.aliasi.util.Math
Returns the log base 2 of the specivied value.
LOG2_E - Static variable in class com.aliasi.util.Math
The log base 2 of the constant e, which is the base of the natural logarithm.
log2BinomialCoefficient(long, long) - Static method in class com.aliasi.stats.BinomialDistribution
Returns the log (base 2) of the binomial coefficient of the specified arguments.
log2BinomialCoefficient(long, long) - Static method in class com.aliasi.util.Math
Returns the log (base 2) of the binomial coefficient of the specified arguments.
log2CaseProb(CharSequence) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns the log (base 2) marginal probability of the specified input.
log2ConditionalEstimate(CharSequence) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM
 
log2ConditionalEstimate(char[], int, int) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM
 
log2ConditionalEstimate(CharSequence) - Method in class com.aliasi.lm.CompiledNGramProcessLM
 
log2ConditionalEstimate(char[], int, int) - Method in class com.aliasi.lm.CompiledNGramProcessLM
 
log2ConditionalEstimate(char[], int, int) - Method in interface com.aliasi.lm.LanguageModel.Conditional
Returns the log (base 2) of the probability estimate for the conditional probability of the last character in the specified slice given the previous characters.
log2ConditionalEstimate(CharSequence) - Method in interface com.aliasi.lm.LanguageModel.Conditional
Returns the log (base 2) of the probabilty estimate for the conditional probability of the last character in the specified character sequence given the previous characters.
log2ConditionalEstimate(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM
 
log2ConditionalEstimate(char[], int, int) - Method in class com.aliasi.lm.NGramBoundaryLM
 
log2ConditionalEstimate(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM
 
log2ConditionalEstimate(char[], int, int) - Method in class com.aliasi.lm.NGramProcessLM
 
log2ConditionalEstimate(CharSequence, int, double) - Method in class com.aliasi.lm.NGramProcessLM
Returns the log (base 2) conditional estimate of the last character in the specified character sequence given the previous characters based only on counts of n-grams up to the specified maximum n-gram.
log2ConditionalEstimate(char[], int, int, int, double) - Method in class com.aliasi.lm.NGramProcessLM
Returns the log (base 2) conditional estimate for a specified character slice with a specified maximum n-gram and specified hyperparameter.
log2Estimate(CharSequence) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM
 
log2Estimate(char[], int, int) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM
 
log2Estimate(CharSequence) - Method in class com.aliasi.lm.CompiledNGramProcessLM
 
log2Estimate(int, char) - Method in class com.aliasi.lm.CompiledNGramProcessLM
Returns the log (base 2) estimate of the specified character in the context with the specified index.
log2Estimate(char[], int, int) - Method in class com.aliasi.lm.CompiledNGramProcessLM
 
log2Estimate(CharSequence) - Method in class com.aliasi.lm.CompiledTokenizedLM
 
log2Estimate(char[], int, int) - Method in class com.aliasi.lm.CompiledTokenizedLM
 
log2Estimate(char[], int, int) - Method in interface com.aliasi.lm.LanguageModel
Returns an estimate of the log (base 2) probability of the specified character slice.
log2Estimate(CharSequence) - Method in interface com.aliasi.lm.LanguageModel
Returns an estimate of the log (base 2) probability of the specified character sequence.
log2Estimate(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM
 
log2Estimate(char[], int, int) - Method in class com.aliasi.lm.NGramBoundaryLM
 
log2Estimate(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM
 
log2Estimate(char[], int, int) - Method in class com.aliasi.lm.NGramProcessLM
 
log2Estimate(CharSequence) - Method in class com.aliasi.lm.TokenizedLM
 
log2Estimate(char[], int, int) - Method in class com.aliasi.lm.TokenizedLM
 
log2Estimate(char[], int, int) - Method in class com.aliasi.lm.UniformBoundaryLM
 
log2Estimate(CharSequence) - Method in class com.aliasi.lm.UniformBoundaryLM
 
log2Estimate(char[], int, int) - Method in class com.aliasi.lm.UniformProcessLM
 
log2Estimate(CharSequence) - Method in class com.aliasi.lm.UniformProcessLM
 
log2Factorial(long) - Static method in class com.aliasi.util.Math
Returns the log (base 2) of the factorial of the specified long integer.
log2Gamma(double) - Static method in class com.aliasi.util.Math
Returns the log (base 2) of the Γ function.
log2Likelihood(Vector[], int[], LogisticRegression) - Static method in class com.aliasi.stats.LogisticRegression
Returns the log (base 2) likelihood of the specified inputs with the specified categories using the specified regression model.
log2Likelihood(Vector[], Vector[], LogisticRegression) - Static method in class com.aliasi.stats.LogisticRegression
 
log2ModelProb() - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns the log (base 2) of the probability density of this model in the Dirichlet prior specified by this classifier.
log2MultinomialCoefficient(int[]) - Static method in class com.aliasi.stats.MultinomialDistribution
Returns the log (base 2) multinomial coefficient for the specified counts.
log2Prior(double, int) - Method in class com.aliasi.stats.RegressionPrior
Returns the log (base 2) of the prior density evaluated at the specified coefficient value for the specified dimension (up to an additive constant).
log2Prior(Vector) - Method in class com.aliasi.stats.RegressionPrior
Returns the log (base 2) prior density for a specified coefficient vector (up to an additive constant).
log2Prior(Vector[]) - Method in class com.aliasi.stats.RegressionPrior
Returns the log (base 2) prior density for the specified array of coefficient vectors (up to an additive constant).
log2Prob(CharSequence) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM
This method is a convenience impelementation of the Model interface which delegates the call to CompiledNGramBoundaryLM.log2Estimate(CharSequence).
log2Prob(CharSequence) - Method in class com.aliasi.lm.CompiledNGramProcessLM
This method is a convenience impelementation of the Model interface which delegates the call to CompiledNGramProcessLM.log2Estimate(CharSequence).
log2Prob(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM
This method is a convenience impelementation of the Model interface which delegates the call to NGramBoundaryLM.log2Estimate(CharSequence).
log2Prob(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM
 
log2Prob(E) - Method in interface com.aliasi.stats.Model
Returns the log (base 2) of the probability of the specified object.
log2Probability(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the log (base 2) probability of the specified outcome.
log2Probability(long) - Method in class com.aliasi.stats.BinomialDistribution
Returns the log (base 2) probability of the specified outcome.
log2Probability(long) - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the log (base 2) probability of the specified outcome.
log2Probability(int[]) - Method in class com.aliasi.stats.MultinomialDistribution
Returns the log (base 2) probability of the distribution of outcomes specified in the argument.
log2Probability(String) - Method in class com.aliasi.stats.MultivariateDistribution
Returns the log (base 2) probability of the outcome specified by label.
log2Probability(long) - Method in class com.aliasi.stats.PoissonDistribution
Returns the log (base 2) probability estimate in this Poisson distribution for the specified outcome.
logBackward(int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice
 
logBackward(int, int) - Method in class com.aliasi.tag.TagLattice
Returns the log of the backward probability to the specified token and tag.
logBase2ToNaturalLog(double) - Static method in class com.aliasi.util.Math
Converts a log base 2 logarithm to a natural logarithm.
logForward(int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice
 
logForward(int, int) - Method in class com.aliasi.tag.TagLattice
Return the log of the forward probability of the specified tag at the specified position.
logInterpolated(double, RegressionPrior, RegressionPrior) - Static method in class com.aliasi.stats.RegressionPrior
Returns the prior that interpolates its log probability between the specified priors with the weight going to the first prior.
LogisticRegression - Class in com.aliasi.stats
A LogisticRegression instance is a multi-class vector classifier model generating conditional probability estimates of categories.
LogisticRegression(Vector[]) - Constructor for class com.aliasi.stats.LogisticRegression
Construct a multinomial logistic regression model with the specified weight vectors.
LogisticRegression(Vector) - Constructor for class com.aliasi.stats.LogisticRegression
Construct a binomial logistic regression model with the specified parameter vector.
logisticRegression(double[], double[], double) - Static method in class com.aliasi.stats.Statistics
Returns a two-element array of logistic regression coefficients for the specified x and y values.
LogisticRegressionClassifier<E> - Class in com.aliasi.classify
A LogisticRegressionClassifier provides conditional probability classifications of input objects using an underlying logistic regression model and feature extractor.
LogLevel - Enum in com.aliasi.io
A LogLevel is used to indicate a severity level for selecting which logging messages to report.
logProbability(int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice
Return the log of the conditional probability that the specified token has the specified tag, given the complete list of input tokens.
logProbability(int, int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice
 
logProbability(int, int[]) - Method in class com.aliasi.crf.ForwardBackwardTagLattice
Return the log conditional probability that the tokens starting with the specified token position have the specified tags given the complete sequence of input tokens.
logProbability(int, int) - Method in class com.aliasi.tag.TagLattice
Convenience method returning the log of the conditional probability that the specified token has the specified tag, given the complete list of input tokens.
logProbability(int, int, int) - Method in class com.aliasi.tag.TagLattice
Convenience method returning the log of the conditional probability that the specified two tokens have the specified tag given the complete list of input tokens.
logProbability(int, int[]) - Method in class com.aliasi.tag.TagLattice
Return the log conditional probability that the tokens starting with the specified token position have the specified tags given the complete sequence of input tokens.
logSumOfExponentials(double[]) - Static method in class com.aliasi.util.Math
This method returns the log of the sum of the natural exponentiated values in the specified array.
logTransition(int, int, int) - Method in class com.aliasi.crf.ForwardBackwardTagLattice
 
logTransition(int, int, int) - Method in class com.aliasi.tag.TagLattice
Returns the log of the transition probability from the specified input token position with the specified previous tag to the specified target tag.
logZ() - Method in class com.aliasi.crf.ForwardBackwardTagLattice
Return the log of the normalizing constant for the lattice.
logZ() - Method in class com.aliasi.tag.TagLattice
Return the log of the normalizing constant for the lattice.
LONGDESC - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the longdesc attribute.
LONGEST_MATCH_ORDER_COMPARATOR - Static variable in interface com.aliasi.chunk.Chunk
Compares two chunks based on their text position.
longestContextIndex(String) - Method in class com.aliasi.lm.CompiledNGramProcessLM
Return the index in the parallel array structure underlying of the maximum length suffix of the specified string that is defined as a context.
longValue() - Method in class com.aliasi.util.Counter
Returns the value of this counter as a long.
LowerCaseTokenizerFactory - Class in com.aliasi.tokenizer
A LowerCaseTokenizerFactory filters the tokenizers produced by a base tokenizer factory to produce lower case output.
LowerCaseTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.LowerCaseTokenizerFactory
Construct a lowercasing tokenizer factory from the specified base factory using the locale Locale.English
LowerCaseTokenizerFactory(TokenizerFactory, Locale) - Constructor for class com.aliasi.tokenizer.LowerCaseTokenizerFactory
Construct a lowercasing tokenizer factory from the specified base factory using the specified locale.

M

macroAvgFMeasure() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the average F measure per category.
macroAvgPrecision() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the average precision per category.
macroAvgRecall() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the average precision per category.
MALE_GENDER - Static variable in class com.aliasi.coref.EnglishMentionFactory
The gender for males.
MALE_HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory
The set of male honorifics.
MAP - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element map.
map() - Method in class com.aliasi.xml.XHtmlWriter
Start an map element with no attributes.
map(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an map element with the specified attributes.
map(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an map element with the specified attribute and value.
map(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an map element with the specified attributes and values.
map(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an map element with the specified attributes and values.
map(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an map element with the specified attributes and values.
MapDictionary<C> - Class in com.aliasi.dict
A MapDictionary uses an underlying map from phrases to their set of dictionary entries.
MapDictionary() - Constructor for class com.aliasi.dict.MapDictionary
Construct an empty map-based dictionary.
MapSymbolTable - Class in com.aliasi.symbol
A MapSymbolTable is a dynamic symbol table based on a pair of underlying maps.
MapSymbolTable() - Constructor for class com.aliasi.symbol.MapSymbolTable
Construct an empty map symbol table.
MapSymbolTable(int) - Constructor for class com.aliasi.symbol.MapSymbolTable
Construct an empty map symbol table that begins allocating identifiers at the specified value.
MapSymbolTable(Map<String, Integer>) - Constructor for class com.aliasi.symbol.MapSymbolTable
Construct a map symbol which associates symbols to identifiers based on the specified map.
MarginalTagger<E> - Interface in com.aliasi.tag
The MarginalTagger<E> interface is for objects that tag a list of tokens with marginal per-tag and transition probabilities.
MarginalTaggerEvaluator<E> - Class in com.aliasi.tag
A MarginalTaggerEvaluator evaluates marginal taggers either directly or by adding their outputs.
MarginalTaggerEvaluator(MarginalTagger<E>, Set<String>, boolean) - Constructor for class com.aliasi.tag.MarginalTaggerEvaluator
Construct an evaluator for the specified marginal tagger, using the specifed tag set and flag indicating whether or not to store input tokens.
match(Mention, MentionChain) - Method in class com.aliasi.coref.BooleanMatcherAdapter
Final implementation of the matching function required by Matcher.
match(Mention, MentionChain) - Method in interface com.aliasi.coref.Matcher
Returns the match score between a specified mention and mention chain.
matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.BooleanMatcherAdapter
Returns true if the specified mention matches the specified mention chain.
matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.EntityTypeMatch
Returns true if the mention has the type that was specified in the constructor.
matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.ExactPhraseMatch
Returns true if the normal phrase of the mention is equal to the normal phrase of a mention in the mention chain.
matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch
Returns true if the normal tokens in the mention are within a threshold edit distance of the normal tokens in one of the mentions in the chain.
matchBoolean(Mention, MentionChain) - Method in class com.aliasi.coref.matchers.SynonymMatch
Returns true if the mention's normal phrase has a synonym that is the normal phrase of one of the chain's mentions.
Matcher - Interface in com.aliasi.coref
An implementation of the matching interface provides a score for matching a mention against a mention chain.
matchers() - Method in class com.aliasi.coref.AbstractMentionChain
The matching functions defined for this mention chain.
matchers() - Method in class com.aliasi.coref.MentionChainImpl
The matching functions defined for this mention chain.
matchScore(Mention) - Method in class com.aliasi.coref.AbstractMentionChain
Returns the best match score of the mention versus the mention chain according to the matching functions determined by the antecedent.
matchScore(Mention) - Method in interface com.aliasi.coref.MentionChain
Returns the best match score of the mention versus the mention chain according to the matching functions determined by the antecedent.
matchWeight(char) - Method in class com.aliasi.spell.FixedWeightEditDistance
Returns the constant weight of matching the specified character.
matchWeight(char) - Method in class com.aliasi.spell.WeightedEditDistance
Returns the weight of matching the specified character.
Math - Class in com.aliasi.util
A math utility class with static methods.
Matrices - Class in com.aliasi.matrix
The Matrices class contains static utility methods for various matrix properties and operations.
matrix() - Method in class com.aliasi.classify.ConfusionMatrix
Return a copy of the matrix values.
Matrix - Interface in com.aliasi.matrix
A Matrix represents a 2-dimensional matrix.
max(double...) - Static method in class com.aliasi.util.Math
Returns the maximum value of an element in xs.
max(int...) - Static method in class com.aliasi.util.Math
Returns the maximum value of an element in the specified array.
MAX_DISTANCE_SCORE - Static variable in interface com.aliasi.coref.Matcher
Maximum distance score between a mention and a mention chain.
MAX_SCORE - Static variable in interface com.aliasi.coref.Matcher
MAX_SEMANTIC_SCORE - Static variable in interface com.aliasi.coref.Matcher
Maximum value for the matching function, currently 4.
maxEpochs() - Method in class com.aliasi.cluster.KMeansClusterer
Returns the maximum number of epochs for this clusterer.
maximum(double...) - Static method in class com.aliasi.util.Math
Returns the maximum of the specified array of double values.
maximumFMeasure() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the maximum F1-measure for an operating point on the PR curve.
maximumFMeasure(double) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the maximum Fβ-measure for an operating point on the precision-recall curve for a specified precision weight β > 0.
maxLength() - Method in class com.aliasi.lm.TrieIntSeqCounter
Returns the maximum length of subsequence of integers being counted.
MAXLENGTH - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the maxlength attribute.
maxNBest() - Method in class com.aliasi.tag.NBestTaggerEvaluator
Returns the maximum number of results examined in the response for each test case.
maxNGram() - Method in class com.aliasi.lm.CompiledNGramProcessLM
Returns the maximum length n-gram used for this compiled language model.
maxNGram() - Method in class com.aliasi.lm.NGramProcessLM
Returns the maximum n-gram length for this model.
maxNGram() - Method in class com.aliasi.tokenizer.NGramTokenizerFactory
Returns the maximum n-gram length returned by this tokenizer factory.
maxNGram() - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory
Return the maximum n-gram length.
maxOutcome() - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the maximum outcome with non-zero probability for this distribution.
maxOutcome() - Method in class com.aliasi.stats.BernoulliDistribution
Returns one, the maximum outcome for a Bernoulli distribution.
maxOutcome() - Method in class com.aliasi.stats.BinomialDistribution
Returns the maximum non-zero probability outcome, which is the number of trials for this distribution.
maxOutcome() - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the maximum outcome with non-zero probability.
maxOutcome() - Method in class com.aliasi.stats.MultivariateDistribution
Returns the maximum outcome with non-zero probability for a multivariate distribution.
maxOutcome() - Method in class com.aliasi.stats.ZipfDistribution
Returns the maximum outcome, which is just the number of outcomes.
maxResults() - Method in class com.aliasi.classify.BigVectorClassifier
Return the maximum number of top results returned by this classifier.
maxResultsPerPrefix() - Method in class com.aliasi.spell.AutoCompleter
Returns the maximum number of results returned by this auto completer for each input prefix.
maxSearchQueueSize() - Method in class com.aliasi.spell.AutoCompleter
Returns the maximum number of elements on the search queue.
maxSentenceOffset() - Method in class com.aliasi.coref.AbstractMentionChain
Offset of the last sentence in which a mention belonging to this mention chain appears.
maxSentenceOffset() - Method in interface com.aliasi.coref.MentionChain
Offset of the last sentence in which a mention belonging to this mention chain appears.
maxSize() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the maximum size allowed for this queue.
maxSize() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the maximum size of this queue.
maxSuffixLength() - Method in class com.aliasi.suffixarray.CharSuffixArray
Returns the maximum length of suffixes to compare for this suffix array.
maxSuffixLength() - Method in class com.aliasi.suffixarray.TokenSuffixArray
Returns the maximum length of suffixes to compare for this suffix array.
mean(String) - Method in class com.aliasi.features.ZScoreFeatureExtractor
Returns the mean for the specified feature, or Double.NaN if the feature is not known.
mean() - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the mean of this distribution.
mean() - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the mean of this distribution.
mean() - Method in class com.aliasi.stats.OnlineNormalEstimator
Returns the mean of the samples.
mean() - Method in class com.aliasi.stats.PoissonConstant
Returns the mean of this distribution, which is fixed at construction time.
mean() - Method in class com.aliasi.stats.PoissonDistribution
Returns the mean of this Poisson distribution, which is equal to the rate parameter λ.
mean() - Method in class com.aliasi.stats.PoissonEstimator
Returns the mean for this estimator.
mean(double[]) - Static method in class com.aliasi.stats.Statistics
Returns the mean of the specified array of input values.
meanReciprocalRank() - Method in class com.aliasi.classify.RankedClassifierEvaluator
Returns the average over all test samples of the reciprocal of one plus the rank of the reference category in the response.
MEDIA - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the media attribute.
MedlineSentenceModel - Class in com.aliasi.sentences
A MedlineSentenceModel is a heuristic sentence model designed for operating over biomedical research abstracts as found in MEDLINE.
MedlineSentenceModel() - Constructor for class com.aliasi.sentences.MedlineSentenceModel
Construct a MEDLINE sentence model.
member(Object, Object[]) - Static method in class com.aliasi.util.Arrays
Returns true if the specified object is an element of the specified array.
member(char, char[]) - Static method in class com.aliasi.util.Arrays
Returns true if the specified character is a member of the specified array.
memberIterator() - Method in class com.aliasi.util.ObjectToSet
Returns an iterator over all values.
memberSet() - Method in class com.aliasi.cluster.Dendrogram
Returns the members of this dendrogram.
memberSet() - Method in class com.aliasi.cluster.LeafDendrogram
Returns the singleton member of this dendrogram.
memberSet() - Method in class com.aliasi.cluster.LinkDendrogram
 
memberValues() - Method in class com.aliasi.util.ObjectToSet
Returns a set constituting the union of all of the members of the set values for all of the keys.
Mention - Interface in com.aliasi.coref
An instance of Mention represents a single mention of a given phrase in context.
MentionChain - Interface in com.aliasi.coref
A MentionChain represents a set of mentions that have been resolved as coreferent in that they refer to the same underlying entity.
MentionChainImpl - Class in com.aliasi.coref
An implementation of mention chains.
MentionChainImpl(Mention, int, int) - Constructor for class com.aliasi.coref.MentionChainImpl
Construct a mention chain implementation containing the single specified mention at the specified offset, assigning the chain the specified identifier.
mentionChains() - Method in class com.aliasi.coref.WithinDocCoref
Returns the set of mention chains, sorted in order of identifier from first appearance to last.
MentionFactory - Interface in com.aliasi.coref
A MentionFactory is responsible for creating and merging mentions and mention chains.
mentions() - Method in class com.aliasi.coref.AbstractMentionChain
Returns the set of mentions underlying this mention chain.
mentions() - Method in interface com.aliasi.coref.MentionChain
Returns the set of mentions underlying this mention chain.
MENU - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element menu.
menu() - Method in class com.aliasi.xml.XHtmlWriter
Start an menu element with no attributes.
menu(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an menu element with the specified attributes.
menu(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an menu element with the specified attribute and value.
menu(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an menu element with the specified attributes and values.
menu(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an menu element with the specified attributes and values.
menu(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an menu element with the specified attributes and values.
merge(Chunking, Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl
Return the result of combining two chunkings into a single non-overlapping chunking.
META - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element meta.
meta() - Method in class com.aliasi.xml.XHtmlWriter
Start an meta element with no attributes.
meta(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an meta element with the specified attributes.
meta(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an meta element with the specified attribute and value.
meta(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an meta element with the specified attributes and values.
meta(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an meta element with the specified attributes and values.
meta(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an meta element with the specified attributes and values.
METHOD - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the method attribute.
mHandler - Variable in class com.aliasi.xml.SAXFilterHandler
The contained default handler to which events are delegated by default.
microAverage() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the micro-averaged precision-recall evaluation.
minimum(double...) - Static method in class com.aliasi.util.Math
Returns the minimum of the specified array of double values.
minimumTokenLengthToCorrect() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the minimum length of token that will be corrected.
MinkowskiDistance - Class in com.aliasi.matrix
The MinkowskiDistance class implements Minkowski distance of a fixed order between vectors.
MinkowskiDistance(int) - Constructor for class com.aliasi.matrix.MinkowskiDistance
Construct a new Minkowski distance of the specified order.
MinMaxHeap<E extends Scored> - Class in com.aliasi.util
A MinMaxHeap provides a heap-like data structure that provides fast access to both the minimum and maximum elements of the heap.
MinMaxHeap(int) - Constructor for class com.aliasi.util.MinMaxHeap
Construct a min-max heap holding up to the specified number of elements.
minNGram() - Method in class com.aliasi.tokenizer.NGramTokenizerFactory
Returns the minimum n-gram length returned by this tokenizer factory.
minNGram() - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory
Return the minimum n-gram length.
minOutcome() - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the minimum outcome with non-zero probability for this distribution.
minOutcome() - Method in class com.aliasi.stats.BinomialDistribution
Returns zero, the minimum outcome for a binomial distribution.
minOutcome() - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the minimum outcome with non-zero probability.
minOutcome() - Method in class com.aliasi.stats.MultivariateDistribution
Returns zero, the minimum outcome with non-zero probability for a multivariate distribution.
minOutcome() - Method in class com.aliasi.stats.PoissonDistribution
Returns the minimum outcome with non-zero probability, 0.
minOutcome() - Method in class com.aliasi.stats.ZipfDistribution
Returns one, the minimum outcome in a Zipf distribution.
minRelativeImprovement() - Method in class com.aliasi.cluster.KMeansClusterer
Returns the minimum reduction in relative error required to continue to the next epoch during clustering.
mode(int) - Method in class com.aliasi.stats.RegressionPrior
Returns the mode of the prior.
model() - Method in class com.aliasi.classify.LogisticRegressionClassifier
Returns the logistic regression model underlying this classifier.
Model<E> - Interface in com.aliasi.stats
A Model represents a generic interface for classes that estimate probabilities of objects.
ModifiedFeatureExtractor<E> - Class in com.aliasi.features
A ModifiedFeatureExtractor allows feature values to be modified in a feature-specific fashion.
ModifiedFeatureExtractor(FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.ModifiedFeatureExtractor
Construct a modified feature extractor with the specified base extractor.
ModifiedTokenizerFactory - Class in com.aliasi.tokenizer
A ModifiedTokenizerFactory is an abstract tokenizer factory that modifies a tokenizer returned by a base tokenizer factory.
ModifiedTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.ModifiedTokenizerFactory
Construct a modified tokenizer factory with the specified base factory.
Modifier(Iterator<? extends E>) - Constructor for class com.aliasi.util.Iterators.Modifier
Construct a modifier from an underlying iterator.
modify(Tokenizer) - Method in class com.aliasi.tokenizer.ModifiedTokenizerFactory
Return a modified form of the specified tokenizer.
modify(Tokenizer) - Method in class com.aliasi.tokenizer.ModifyTokenTokenizerFactory
Return a modified version of the specified tokenizer that modifies tokens and whitespaces as specified by the corresponding string modifier methods.
modify(E) - Method in class com.aliasi.util.Iterators.Modifier
This abstract method is applied to objects returned by the underlying iterator to create the object returned by this iterator.
modifyToken(String) - Method in class com.aliasi.tokenizer.LowerCaseTokenizerFactory
Return the lowercased version of the specified token using this factory's locale.
modifyToken(String) - Method in class com.aliasi.tokenizer.ModifyTokenTokenizerFactory
Return a modified form of the specified token, or null to remove it.
modifyToken(String) - Method in class com.aliasi.tokenizer.PorterStemmerTokenizerFactory
Returns the Porter stemmed version of the specified token.
modifyToken(String) - Method in class com.aliasi.tokenizer.RegExFilteredTokenizerFactory
Returns the specified token if it matches this filter's pattern and null otherwise.
modifyToken(String) - Method in class com.aliasi.tokenizer.SoundexTokenizerFactory
Returns the Soundex encoding of the specified token.
modifyToken(String) - Method in class com.aliasi.tokenizer.StopTokenizerFactory
 
modifyToken(String) - Method in class com.aliasi.tokenizer.TokenLengthTokenizerFactory
Return a tokenizer that filters out any tokens produced by the specified tokenizer that are shorter than the shortest or longer than the longest acceptable lengths.
ModifyTokenTokenizerFactory - Class in com.aliasi.tokenizer
The abstract base class ModifyTokenTokenizerFactory adapts token and whitespace modifiers to modify tokenizer factories.
ModifyTokenTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.ModifyTokenTokenizerFactory
Construct a token-modifying tokenizer factory with the specified base factory.
modifyWhitespace(String) - Method in class com.aliasi.tokenizer.ModifyTokenTokenizerFactory
Return the modified form of the specified whitespace.
modifyWhitespace(String) - Method in class com.aliasi.tokenizer.WhitespaceNormTokenizerFactory
Return the normalized form of the specified whitespace.
mostSignificantPowerOfTwo(long) - Static method in class com.aliasi.io.BitOutput
Returns the index of the most significant bit filled for the specified long value.
msToString(long) - Static method in class com.aliasi.util.Strings
Takes a time in milliseconds and returns an hours, minutes and seconds representation.
mucF() - Method in class com.aliasi.cluster.ClusterScore
Returns the F1 measure of the MUC recall and precision.
mucPrecision() - Method in class com.aliasi.cluster.ClusterScore
Returns the precision as defined by MUC.
mucRecall() - Method in class com.aliasi.cluster.ClusterScore
Returns the recall as defined by MUC.
MultinomialDistribution - Class in com.aliasi.stats
A MultinomialDistribution results from drawing a fixed number of samples from a multivariate distribution.
MultinomialDistribution(MultivariateDistribution) - Constructor for class com.aliasi.stats.MultinomialDistribution
Construct a multinomial distribution based on the specified multivariate distribution.
MULTIPLE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the multiple attribute.
MultiTrieReader - Class in com.aliasi.lm
A MultiTrieReader merges two trie readers, providing output that is the result of adding the counts from the two readers.
MultiTrieReader(TrieReader, TrieReader) - Constructor for class com.aliasi.lm.MultiTrieReader
Construct a multiple trie reader that returns counts that are the sum of the two readers' counts.
MultivariateConstant - Class in com.aliasi.stats
A MultivariateConstant provides a multinomial distribution with constant probabilities and labels.
MultivariateConstant(int) - Constructor for class com.aliasi.stats.MultivariateConstant
Construct a uniform constant multinomial distribution with the specified number of outcomes.
MultivariateConstant(long[]) - Constructor for class com.aliasi.stats.MultivariateConstant
Construct a constant multinomial distribution with probabilities proportional to the specified counts.
MultivariateConstant(double[]) - Constructor for class com.aliasi.stats.MultivariateConstant
Construct a constant multinomial distribution with probabilities proportional to the specified ratios.
MultivariateConstant(String[]) - Constructor for class com.aliasi.stats.MultivariateConstant
Construct a uniform constant multinomial distribution with the specified labels.
MultivariateConstant(long[], String[]) - Constructor for class com.aliasi.stats.MultivariateConstant
Construct a constant multinomial distribution with the specified labels and probabilities proportional to the specified counts.
MultivariateConstant(double[], String[]) - Constructor for class com.aliasi.stats.MultivariateConstant
Construct a constant multinomial distribution with the specified labels and probabilities proportional to the specified counts.
MultivariateDistribution - Class in com.aliasi.stats
A MultivariateDistribution implements a discrete distribution over a finite set of outcomes numbered consecutively from zero.
MultivariateDistribution() - Constructor for class com.aliasi.stats.MultivariateDistribution
Construct a multivariate distribution.
MultivariateEstimator - Class in com.aliasi.stats
A MultivariateEstimator provides a maximum likelihood estimator of a multivariate distribution based on training samples.
MultivariateEstimator() - Constructor for class com.aliasi.stats.MultivariateEstimator
Construct a multivariate estimator with no known outcomes or counts.
mutualInformation() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the mutual information between the reference and response distributions.

N

NaiveBayesClassifier - Class in com.aliasi.classify
A NaiveBayesClassifier provides a trainable naive Bayes text classifier, with tokens as features.
NaiveBayesClassifier(String[], TokenizerFactory) - Constructor for class com.aliasi.classify.NaiveBayesClassifier
Construct a naive Bayes classifier with the specified categories and tokenizer factory.
NaiveBayesClassifier(String[], TokenizerFactory, int) - Constructor for class com.aliasi.classify.NaiveBayesClassifier
Construct a naive Bayes classifier with the specified categories, tokenizer factory and level of character n-gram for smoothing token estimates.
NaiveBayesClassifier(String[], TokenizerFactory, int, int) - Constructor for class com.aliasi.classify.NaiveBayesClassifier
Construct a naive Bayes classifier with the specified categories, tokenizer factory and level of character n-gram for smoothing token estimates, along with a specification of the total number of characters in test and training instances.
NAME - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the name attribute.
NATURAL_INT_COMPARE - Static variable in class com.aliasi.util.Sort
This constant implements the CompareInt interface using the natural order of integers.
naturalLogToBase2Log(double) - Static method in class com.aliasi.util.Math
Converts a natural logarithm to a base 2 logarithm.
nBest(char[], int, int, int) - Method in class com.aliasi.chunk.HmmChunker
Returns a size-bounded iterator over scored objects with joint probability estimates of tags and tokens as scores and chunkings as objects.
nBest(char[], int, int, int) - Method in interface com.aliasi.chunk.NBestChunker
Return the scored chunkings of the specified character sequence in order as an iterator in order of score.
nBest(char[], int, int, int) - Method in class com.aliasi.chunk.RescoringChunker
Returns the n-best chunkings of the specified character slice.
nBest(char[], int, int, int) - Method in class com.aliasi.crf.ChainCrfChunker
 
NBestChunker - Interface in com.aliasi.chunk
An NBestChunker is a chunker that is able to return results iterating over scored chunkings or scored chunks in order of decreasing likelihood.
nBestChunks(TagLattice<String>, int[], int[], int) - Method in class com.aliasi.chunk.BioTagChunkCodec
 
nBestChunks(char[], int, int, int) - Method in interface com.aliasi.chunk.ConfidenceChunker
Returns the n-best chunks in decreasing order of probability estimates.
nBestChunks(char[], int, int, int) - Method in class com.aliasi.chunk.HmmChunker
Returns an iterator over scored objects with conditional probability estimates for scores and chunks as objects.
nBestChunks(TagLattice<String>, int[], int[], int) - Method in class com.aliasi.chunk.IoTagChunkCodec
 
nBestChunks(char[], int, int, int) - Method in class com.aliasi.chunk.RescoringChunker
Returns the n-best chunks for the specified character slice up to the specified maximum number of chunks.
nBestChunks(TagLattice<String>, int[], int[], int) - Method in interface com.aliasi.chunk.TagChunkCodec
Returns an iterator over chunks extracted in order of highest probability up to the specified maximum number of results.
nBestChunks(char[], int, int, int) - Method in class com.aliasi.crf.ChainCrfChunker
 
nBestConditional(char[], int, int, int) - Method in class com.aliasi.chunk.HmmChunker
Returns a size-bounded iterator over scored objects with conditional probability estimates of tags and tokens as scores and chunkings as objects.
nBestConditional(char[], int, int, int) - Method in class com.aliasi.crf.ChainCrfChunker
Returns an iterator over n-best chunkings with scores normalized to conditional probabilities of the output given the input string slice.
nBestEvaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator
Returns the n-best evaluation in the form of a mapping from ranks to the number of times the reference chunking was that rank in the evaluation.
nBestHistogram() - Method in class com.aliasi.tag.NBestTaggerEvaluator
Return the histogram of results mapping ranks to the number of test cases where the correct result was at that rank.
nBestSize() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the n-best size for this spell checker.
NBestTagger<E> - Interface in com.aliasi.tag
The NBestTagger<E> interface for objects that tag a list of objects with multiple tagged results.
NBestTaggerEvaluator<E> - Class in com.aliasi.tag
An NBestTaggerEvaluator provides an evaluation framework for n-best taggers.
NBestTaggerEvaluator(NBestTagger<E>, int, int) - Constructor for class com.aliasi.tag.NBestTaggerEvaluator
Construct an n-best tagger evaluator using the specified tagger, restricting the response taggings to the maximum number of outputs specified, and writing the specified number of outputs to the last case string.
NBSP_CHAR - Static variable in class com.aliasi.util.Strings
The non-breakable space character.
negativeReference() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of negative reference cases.
negativeResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of negative response cases.
NEUTER_GENDER - Static variable in class com.aliasi.coref.EnglishMentionFactory
The gender for neuters.
NEWLINE_CHAR - Static variable in class com.aliasi.util.Strings
The newline character.
newTermSet(int, int, int, LanguageModel.Tokenized) - Method in class com.aliasi.lm.TokenizedLM
Returns a list of scored n-grams ordered by the significance of the degree to which their counts in this model exceed their expected counts in a specified background model.
next() - Method in class com.aliasi.util.Iterators.Buffered
Returns the next object for this iterator.
next() - Method in class com.aliasi.util.Iterators.Filter
Returns the next value from the contained iterator that is accepted.
next() - Method in class com.aliasi.util.Iterators.Modifier
Returns the next element for this iterator, which is the object returned by the underlying iterator after undergoing modification by Iterators.Modifier.modify(Object).
next() - Method in class com.aliasi.util.Iterators.PrimitiveInt
Returns the next integer result.
nextContext(int, char) - Method in class com.aliasi.lm.CompiledNGramProcessLM
Returns the index of the context formed by appending the specified character to the context of the specified index.
nextPrime(int) - Static method in class com.aliasi.util.Math
Returns the smallest prime number that is strictly larger than the specified integer.
nextPrimitive() - Method in class com.aliasi.util.Iterators.PrimitiveInt
Returns the next primitive integer.
nextToken() - Method in class com.aliasi.tokenizer.Tokenizer
Returns the next token in the stream, or null if there are no more tokens.
nextWhitespace() - Method in class com.aliasi.tokenizer.Tokenizer
Returns the next whitespace.
NGramBoundaryLM - Class in com.aliasi.lm
An NGramBoundaryLM provides a dynamic sequence language model for which training, estimation and pruning may be interleaved.
NGramBoundaryLM(int) - Constructor for class com.aliasi.lm.NGramBoundaryLM
Constructs a dynamic n-gram sequence language model with the specified maximum n-gram and default values for other parameters.
NGramBoundaryLM(int, int) - Constructor for class com.aliasi.lm.NGramBoundaryLM
Constructs a dynamic n-gram sequence language model with the specified maximum n-gram, specified maximum number of observed characters, and default values for other parameters.
NGramBoundaryLM(int, int, double, char) - Constructor for class com.aliasi.lm.NGramBoundaryLM
Construct a dynamic n-gram sequence language model with the specified maximum n-gram length, number of characters, interpolation ratio hyperparameter and boundary character.
NGramBoundaryLM(NGramProcessLM, char) - Constructor for class com.aliasi.lm.NGramBoundaryLM
Construct an n-gram boundary language model with the specified boundary character and underlying process language model.
nGramCounts(int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
Returns a histogram of counts for n-grams of integers of the specified length, with a count of at least the specified minimum count.
nGramFrequencies(int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Returns an array of frequency counts for n-grams of the specified n-gram order sorted in descending frequency order.
nGramOrder() - Method in class com.aliasi.lm.TokenizedLM
Returns the order of the token n-gram model underlying this tokenized language model.
NGramProcessLM - Class in com.aliasi.lm
An NGramProcessLM provides a dynamic conditional process language model process for which training, estimation, and pruning may be interleaved.
NGramProcessLM(int) - Constructor for class com.aliasi.lm.NGramProcessLM
Constructs an n-gram process language model with the specified maximum n-gram length.
NGramProcessLM(int, int) - Constructor for class com.aliasi.lm.NGramProcessLM
Construct an n-gram language process with the specified maximum n-gram length and maximum number of characters.
NGramProcessLM(int, int, double) - Constructor for class com.aliasi.lm.NGramProcessLM
Construct an n-gram language process with the specified maximum n-gram length, number of characters, and interpolation ratio hyperparameter.
NGramProcessLM(int, double, TrieCharSeqCounter) - Constructor for class com.aliasi.lm.NGramProcessLM
Construct an n-gram process language model with the specified number of characters, interpolation parameter and character sequence counter.
NGramTokenizerFactory - Class in com.aliasi.tokenizer
An NGramTokenizerFactory creates n-gram tokenizers of a specified minimum and maximun length.
NGramTokenizerFactory(int, int) - Constructor for class com.aliasi.tokenizer.NGramTokenizerFactory
Create an n-gram tokenizer factory with the specified minimum and maximum n-gram lengths.
NO_MATCH_SCORE - Static variable in interface com.aliasi.coref.Matcher
Value to return in cases where there can be no match.
NO_OP_DEFAULT_HANDLER - Static variable in class com.aliasi.xml.SimpleElementHandler
A default handler which performs no operation for any method calls.
nodeFeatures(int) - Method in class com.aliasi.crf.ChainCrfFeatures
Return the node features for the specified input position.
noElement() - Method in class com.aliasi.xml.ElementStackFilter
Returns true if there are no elements in the stack.
NOFRAMES - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element noframes.
noframes() - Method in class com.aliasi.xml.XHtmlWriter
Start an noframes element with no attributes.
noframes(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an noframes element with the specified attributes.
noframes(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an noframes element with the specified attribute and value.
noframes(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an noframes element with the specified attributes and values.
noframes(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an noframes element with the specified attributes and values.
noframes(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an noframes element with the specified attributes and values.
NOHREF - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the nohref attribute.
NON_CVS_DIRECTORY_FILE_FILTER - Static variable in class com.aliasi.util.Files
A file filter that accepts files that are directories that are not named "CVS", ignoring case.
NON_TRANSPOSING - Static variable in class com.aliasi.spell.EditDistance
Edit distance disallowing transposition.
noninformative() - Static method in class com.aliasi.stats.RegressionPrior
Returns the noninformative or uniform prior to use for maximum likelihood regression fitting.
nonZeroDimensions() - Method in class com.aliasi.matrix.AbstractVector
Returns an array with the non-zero dimensions of this vector.
nonZeroDimensions() - Method in class com.aliasi.matrix.SparseFloatVector
Returns the array of dimensions that have non-zero values.
nonZeroDimensions() - Method in interface com.aliasi.matrix.Vector
Returns the array of dimensions that have non-zero values.
normalize(String) - Method in class com.aliasi.spell.SpellEvaluator
Return the normalized form of a query or system output.
normalize(double[]) - Static method in class com.aliasi.stats.Statistics
Return an array of probabilities resulting from normalizing the specified probability ratios.
normalizeToken(String) - Method in class com.aliasi.coref.AbstractMentionFactory
Returns a normalized version of the specified token.
normalizeToken(String) - Method in class com.aliasi.coref.EnglishMentionFactory
Returns a normalized version of the specified token.
normalizeWhitespace(CharSequence, StringBuilder) - Static method in class com.aliasi.util.Strings
Appends a whitespace-normalized form of the specified character sequence into the specified string buffer.
normalizeWhitespace(CharSequence) - Static method in class com.aliasi.util.Strings
Returns a whitespace-normalized version of the specified character sequence.
normalPhrase() - Method in class com.aliasi.coref.CachedMention
Returns a normalized version of the phrase, defined to be the concatenation of the normal tokens by a single whitespace.
normalPhrase() - Method in interface com.aliasi.coref.Mention
Returns a normalized version of the phrase.
normalTokens() - Method in class com.aliasi.coref.CachedMention
Returns an array of normalized tokens for this phrase.
normalTokens() - Method in interface com.aliasi.coref.Mention
Returns an array of normalized tokens for this phrase.
NOSCRIPT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element noscript.
noscript() - Method in class com.aliasi.xml.XHtmlWriter
Start an noscript element with no attributes.
noscript(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an noscript element with the specified attributes.
noscript(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an noscript element with the specified attribute and value.
noscript(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an noscript element with the specified attributes and values.
noscript(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an noscript element with the specified attributes and values.
noscript(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an noscript element with the specified attributes and values.
notationDecl(String, String, String) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
notationDecl(String, String, String) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
nsToString(long) - Static method in class com.aliasi.util.Strings
Takes a time in nanoseconds and returns an hours, minutes and seconds representation.
numBareArguments() - Method in class com.aliasi.util.AbstractCommand
Returns the number of bare arguments supplied on the command line.
numCases() - Method in class com.aliasi.classify.BaseClassifierEvaluator
Returns the number of test cases which have been provided to this evaluator.
numCases() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the total number of positive and negative reference cases for this evaluation.
numCases() - Method in class com.aliasi.tag.NBestTaggerEvaluator
Return the number of test cases in this evaluation.
numCases() - Method in class com.aliasi.tag.TaggerEvaluator
Returns the number of cases for this evaluation.
numCategories() - Method in class com.aliasi.classify.BaseClassifierEvaluator
Returns the number of categories for the classifier being evaluated.
numCategories() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the number of categories for this confusion matrix.
numChains() - Method in class com.aliasi.stats.PotentialScaleReduction
Returns the number of chains for this estimator.
numChangedTopics() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the total number of topic assignments to tokens that changed between the last sample and this one.
numCharactersFollowing(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter
Returns the number of characters that when appended to the end of the specified character slice produce an extended slice with a non-zero count.
numCharactersFollowing(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
 
numCharactersFollowing(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
 
numChunkingsRescored() - Method in class com.aliasi.chunk.RescoringChunker
Return the number of chunkings to generate from the base chunker for rescoring.
numClusters() - Method in class com.aliasi.cluster.KMeansClusterer
Returns the maximum number of clusters this clusterer will return.
numColumns() - Method in class com.aliasi.matrix.AbstractMatrix
 
numColumns() - Method in class com.aliasi.matrix.DenseMatrix
 
numColumns() - Method in interface com.aliasi.matrix.Matrix
Returns the number of columns in the matrix.
numColumns() - Method in class com.aliasi.matrix.ProximityMatrix
Returns the number of columns for this matrix.
numColumns() - Method in class com.aliasi.matrix.SvdMatrix
Returns the number of columns in this matrix.
numConsecutiveInsertionsAllowed() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns the number of consecutive insertions allowed.
numDimensions() - Method in class com.aliasi.matrix.AbstractVector
Returns the number of dimensions of this vector.
numDimensions() - Method in class com.aliasi.matrix.DenseVector
Returns the number of dimensions for this dense vector.
numDimensions() - Method in class com.aliasi.matrix.SparseFloatVector
 
numDimensions() - Method in interface com.aliasi.matrix.Vector
Returns the number of dimensions of this vector.
numDimensions() - Method in class com.aliasi.stats.BernoulliDistribution
Returns two, the number of dimensions for a Bernoulli distribution.
numDimensions() - Method in class com.aliasi.stats.MultinomialDistribution
Returns the number of dimensions in this multinomial.
numDimensions() - Method in class com.aliasi.stats.MultivariateConstant
 
numDimensions() - Method in class com.aliasi.stats.MultivariateDistribution
Returns the number of dimensions of this multivariate distribution.
numDimensions() - Method in class com.aliasi.stats.MultivariateEstimator
Returns the number of dimensions for this multivariate estimator.
numDocuments() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the number of documents on which the sample was based.
numDocuments() - Method in class com.aliasi.spell.TfIdfDistance
Returns the total number of training documents.
numDocuments() - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray
Returns the number of documents in the collection.
numExtensions(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter
Returns the number of one integer extensions of the specified with non-zero counts.
numExtensions(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
 
numFolds() - Method in class com.aliasi.corpus.XValidatingObjectCorpus
Return the number of folds for this cross-validating corpus.
numInputDimensions() - Method in class com.aliasi.stats.LogisticRegression
Returns the dimensionality of inputs for this logistic regression model.
numNegativeRef() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Return the number of negative reference cases.
numNodes() - Method in class com.aliasi.lm.CompiledNGramProcessLM
Returns the total number of nodes in this language model's trie structure.
numOutcomes() - Method in class com.aliasi.lm.UniformBoundaryLM
Returns the number of outcomes for this uniform model.
numOutcomes() - Method in class com.aliasi.lm.UniformProcessLM
Returns the number of outcomes for this uniform model.
numOutcomes() - Method in class com.aliasi.stats.LogisticRegression
Returns the number of outcomes for this logistic regression model.
numOutcomes() - Method in class com.aliasi.stats.ZipfDistribution
Returns the number of non-zero outcomes for this Zipf distribution.
numPositiveRef() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the number of positive reference cases.
numRows() - Method in class com.aliasi.matrix.AbstractMatrix
 
numRows() - Method in class com.aliasi.matrix.DenseMatrix
 
numRows() - Method in interface com.aliasi.matrix.Matrix
Returns the number of rows in the matrix.
numRows() - Method in class com.aliasi.matrix.ProximityMatrix
Returns the number of rows for this matrix.
numRows() - Method in class com.aliasi.matrix.SvdMatrix
Returns the number of rows in this matrix.
numSamples() - Method in class com.aliasi.stats.OnlineNormalEstimator
Returns the number of samples seen by this estimator.
numSymbols() - Method in class com.aliasi.symbol.MapSymbolTable
 
numSymbols() - Method in interface com.aliasi.symbol.SymbolTable
Returns the number of symbols in this symbol table.
numSymbols() - Method in class com.aliasi.symbol.SymbolTableCompiler
Returns the number of symbols in this symbol table.
numTags() - Method in class com.aliasi.crf.ChainCrfFeatures
Returns the number of possible output tags for this feature set.
numTags() - Method in class com.aliasi.crf.ForwardBackwardTagLattice
 
numTags() - Method in class com.aliasi.tag.TagLattice
Return the number of tags in this tag lattice.
numTerms() - Method in class com.aliasi.spell.TfIdfDistance
Returns the number of terms that have been seen during training.
numTokens() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the number of tokens in documents on which the sample was based.
numTokens() - Method in class com.aliasi.crf.ChainCrfFeatures
Returns the number of tokens for this feature set.
numTokens() - Method in class com.aliasi.crf.ForwardBackwardTagLattice
 
numTokens() - Method in class com.aliasi.tag.ClassifierTagger.State
Returns the number of tokens in the input.
numTokens() - Method in class com.aliasi.tag.NBestTaggerEvaluator
Return the total number of tokens in all test cases for this evaluator.
numTokens() - Method in class com.aliasi.tag.TaggerEvaluator
Returns the number of tokens tested in the complete set of test cases.
numTokens() - Method in class com.aliasi.tag.TagLattice
Returns the length of this tag lattice as measured by number of tokens.
numTokens() - Method in class com.aliasi.tokenizer.Tokenization
Return the number of tokens in this tokenization.
numTopics() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the number of topics for this sample.
numTopics() - Method in class com.aliasi.cluster.LatentDirichletAllocation
Returns the number of topics in this LDA model.
numTrainingCases() - Method in class com.aliasi.hmm.AbstractHmmEstimator
Return the number of taggings handled.
numTrainingChars() - Method in class com.aliasi.spell.TrainSpellChecker
Returns the total length in characters of all text used to train the spell checker.
numTrainingSamples() - Method in class com.aliasi.stats.BernoulliEstimator
Returns the number of training samples provided for this estimator.
numTrainingSamples(boolean) - Method in class com.aliasi.stats.BernoulliEstimator
Returns the number of training samples for the specified outcome, success or failure.
numTrainingTokens() - Method in class com.aliasi.hmm.AbstractHmmEstimator
Returns the number of tokens handled for training.
numTrials() - Method in class com.aliasi.stats.BinomialDistribution
Returns the number of trials for this binomial distribution.
numWords() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample
Returns the number of distinct words in the documents on which the sample was based.
numWords() - Method in class com.aliasi.cluster.LatentDirichletAllocation
Returns the number of words on which this LDA model is based.

O

object() - Method in class com.aliasi.cluster.LeafDendrogram
Return the single object underlying this leaf dendrogram.
OBJECT - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element object.
object() - Method in class com.aliasi.xml.XHtmlWriter
Start an object element with no attributes.
object(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an object element with the specified attributes.
object(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an object element with the specified attribute and value.
object(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an object element with the specified attributes and values.
object(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an object element with the specified attributes and values.
object(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an object element with the specified attributes and values.
ObjectHandler<E> - Interface in com.aliasi.corpus
The ObjectHandler interface specifies a handler with a single method that takes a single argument of the type of the generic paramter.
ObjectToCounterMap<E> - Class in com.aliasi.util
An ObjectToCounterMap maintains a mapping from objects to integer counters, which may be incremented or set.
ObjectToCounterMap() - Constructor for class com.aliasi.util.ObjectToCounterMap
Construct an object to counter mapping.
ObjectToCounterMap(int) - Constructor for class com.aliasi.util.ObjectToCounterMap
Construct an object to counter mapping with the specified initial size.
ObjectToDoubleMap<E> - Class in com.aliasi.util
An ObjectToDoubleMap maintains a mapping from objects to double-valued counters, which may be incremented or set.
ObjectToDoubleMap() - Constructor for class com.aliasi.util.ObjectToDoubleMap
Construct an object to double mapping.
ObjectToDoubleMap(int) - Constructor for class com.aliasi.util.ObjectToDoubleMap
Construct an object to double mapping with the specified initial capacity.
ObjectToSet<K,M> - Class in com.aliasi.util
An ObjectToSet provides a Map from arbitrary objects to objects of class Set.
ObjectToSet() - Constructor for class com.aliasi.util.ObjectToSet
Construct a new object to set mapping.
observedCharacters() - Method in interface com.aliasi.lm.CharSeqCounter
Returns an array consisting of the characters with non-zero count in unicode order.
observedCharacters() - Method in class com.aliasi.lm.CharSeqMultiCounter
 
observedCharacters() - Method in class com.aliasi.lm.CompiledNGramBoundaryLM
Returns the characters that have been observed for this language model, including the special boundary character.
observedCharacters() - Method in class com.aliasi.lm.CompiledNGramProcessLM
Returns the array of characters that have been observed for this language model.
observedCharacters() - Method in interface com.aliasi.lm.LanguageModel.Conditional
Returns the array of characters that have been observed for this model.
observedCharacters() - Method in class com.aliasi.lm.NGramBoundaryLM
Returns the characters that have been observed for this language model, including the special boundary character.
observedCharacters() - Method in class com.aliasi.lm.NGramProcessLM
 
observedCharacters() - Method in class com.aliasi.lm.TrieCharSeqCounter
 
observedIntegers() - Method in interface com.aliasi.lm.IntSeqCounter
Returns an array of all integers that have non-zero counts in the model.
observedIntegers() - Method in class com.aliasi.lm.TrieIntSeqCounter
 
offer(E) - Method in class com.aliasi.util.BoundedPriorityQueue
Insert the specified element into the queue if possible.
offer(E) - Method in class com.aliasi.util.ShortPriorityQueue
Return true if the specified element may be added to the queue.
OL - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element ol.
ol() - Method in class com.aliasi.xml.XHtmlWriter
Start an ol element with no attributes.
ol(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an ol element with the specified attributes.
ol(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an ol element with the specified attribute and value.
ol(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an ol element with the specified attributes and values.
ol(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an ol element with the specified attributes and values.
ol(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an ol element with the specified attributes and values.
oldTermSet(int, int, int, LanguageModel.Tokenized) - Method in class com.aliasi.lm.TokenizedLM
Returns a list of scored n-grams ordered in reverse order of significance with respect to the background model.
ONBLUR - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onblur attribute.
ONCHANGE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onchange attribute.
ONCLICK - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onclick attribute.
ONDBLCLICK - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the ondblclick attribute.
ONE - Static variable in class com.aliasi.util.BinaryMap
The constant used for the Integer with value 1.
oneVersusAll(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator
Returns the first-best one-versus-all precision-recall evaluation of the classification of the specified reference category versus all other categories.
oneVsAll(int) - Method in class com.aliasi.classify.ConfusionMatrix
Returns the one-versus-all precision-recall evaluation for the specified category index.
ONFOCUS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onfocus attribute.
ONKEYDOWN - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onkeydown attribute.
ONKEYPRESS - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onkeypress attribute.
ONKEYUP - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onkeyup attribute.
OnlineNormalEstimator - Class in com.aliasi.stats
An OnlineNormalEstimator provides an object that estimates means, variances, and standard deviations for a stream of numbers presented one at a time.
OnlineNormalEstimator() - Constructor for class com.aliasi.stats.OnlineNormalEstimator
Construct an instance of an online normal estimator that has seen no data.
ONLOAD - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onload attribute.
ONMOUSEDOWN - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onmousedown attribute.
ONMOUSEMOVE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onmousemove attribute.
ONMOUSEOUT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onmouseout attribute.
ONMOUSEOVER - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onmouseover attribute.
ONMOUSEUP - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onmouseup attribute.
ONRESET - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onreset attribute.
ONSELECT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onselect attribute.
ONSUBMIT - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onsubmit attribute.
ONUNLOAD - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the onunload attribute.
OPTGROUP - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element optgroup.
optgroup() - Method in class com.aliasi.xml.XHtmlWriter
Start an optgroup element with no attributes.
optgroup(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an optgroup element with the specified attributes.
optgroup(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an optgroup element with the specified attribute and value.
optgroup(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an optgroup element with the specified attributes and values.
optgroup(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an optgroup element with the specified attributes and values.
optgroup(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an optgroup element with the specified attributes and values.
OPTION - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element option.
option() - Method in class com.aliasi.xml.XHtmlWriter
Start an option element with no attributes.
option(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an option element with the specified attributes.
option(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an option element with the specified attribute and value.
option(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an option element with the specified attributes and values.
option(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an option element with the specified attributes and values.
option(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an option element with the specified attributes and values.
order() - Method in class com.aliasi.matrix.MinkowskiDistance
Returns the order of this Minkowski distance.
order() - Method in class com.aliasi.matrix.SvdMatrix
Returns the order of this factorization.
OTHER_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer
The other category for non-digits, non-letters and non-punctuation tokens of a single character long.
OUT_TAG - Static variable in class com.aliasi.chunk.BioTagChunkCodec
Default name of out tag, "O".
outcome(String) - Method in class com.aliasi.stats.MultivariateConstant
 
outcome(String) - Method in class com.aliasi.stats.MultivariateDistribution
Return the outcome for the specified label.
outcome(String) - Method in class com.aliasi.stats.MultivariateEstimator
Return the outcome for the specified label.
outLM() - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker
Returns the process language model for non-chunks.
overlap(Chunk, Chunk) - Static method in class com.aliasi.chunk.ChunkingImpl
Returns true if the chunks overlap at least one character position.

P

P - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element p.
p() - Method in class com.aliasi.xml.XHtmlWriter
Start an p element with no attributes.
p(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an p element with the specified attributes.
p(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an p element with the specified attribute and value.
p(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an p element with the specified attributes and values.
p(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an p element with the specified attributes and values.
p(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an p element with the specified attributes and values.
padding(int) - Static method in class com.aliasi.util.Strings
Returns a string consisting of the specified number of default separator characters Strings.DEFAULT_SEPARATOR_CHAR.
padding(StringBuilder, int) - Static method in class com.aliasi.util.Strings
Append the specified number of default separator characters Strings.DEFAULT_SEPARATOR_CHAR to the specified string buffer.
pair(E, E) - Static method in class com.aliasi.util.Iterators
Returns a newly constructed iterator over the specified pair of elements.
Pair<A,B> - Class in com.aliasi.util
The Pair class represents an immutable pair of objects of heterogeneous type.
Pair(A, B) - Constructor for class com.aliasi.util.Pair
Construct a pair consisting of the two specified elements.
PARAM - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element param.
param() - Method in class com.aliasi.xml.XHtmlWriter
Start an param element with no attributes.
param(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an param element with the specified attributes.
param(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an param element with the specified attribute and value.
param(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an param element with the specified attributes and values.
param(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an param element with the specified attributes and values.
param(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an param element with the specified attributes and values.
parametersToString() - Method in class com.aliasi.spell.CompiledSpellChecker
Returns a string-based representation of the parameters of this compiled spell checker.
parent() - Method in class com.aliasi.cluster.Dendrogram
Returns the dendrogram that immediately contains this dendrogram or null if this is a top-level dendrogram.
parse(String) - Method in class com.aliasi.corpus.Parser
Parse the specified system identifier, usually a URL name, passing extracted events to the handler.
parse(String, String) - Method in class com.aliasi.corpus.Parser
Parse the specified system identifier, usually a URL name, using the specified character encoding, passing extracted events to the handler.
parse(File) - Method in class com.aliasi.corpus.Parser
Parse the specified file, passing extracted events to the handler.
parse(File, String) - Method in class com.aliasi.corpus.Parser
Parse the specified file using the specified character encoding, passing events to the handler.
parse(InputSource) - Method in class com.aliasi.corpus.Parser
Parse the specified input source, passing extracted events to the handler.
parse(InputSource) - Method in class com.aliasi.corpus.StringParser
Parse the specified input source.
parse(InputSource) - Method in class com.aliasi.corpus.XMLParser
Parse the specified input source.
parser() - Method in class com.aliasi.corpus.DiskCorpus
Returns the data parser for this corpus.
Parser<H extends Handler> - Class in com.aliasi.corpus
The Parser abstract class provides methods for parsing content from an input source or character sequence and passing extracted events to a content handler.
Parser() - Constructor for class com.aliasi.corpus.Parser
Construct a parser with a null handler.
Parser(H) - Constructor for class com.aliasi.corpus.Parser
Construct a parser with the specified handler.
parseString(char[], int, int) - Method in class com.aliasi.corpus.InputSourceParser
Parse the specified character slice.
parseString(CharSequence) - Method in class com.aliasi.corpus.Parser
Parse the specified character sequence.
parseString(char[], int, int) - Method in class com.aliasi.corpus.Parser
Parse the specified character slice as a string input.
parseString(char[], int, int) - Method in class com.aliasi.tag.LineTaggingParser
 
partialSvd(int[][], double[][], int, double, double, double, double, Reporter, double, int, int) - Static method in class com.aliasi.matrix.SvdMatrix
Return the singular value decomposition of the specified partial matrix, using the specified search parameters.
partitionDistance(double) - Method in class com.aliasi.cluster.Dendrogram
Returns the partition produced by cutting this dendrogram at the specified maximum distance.
partitionK(int) - Method in class com.aliasi.cluster.Dendrogram
Return the partition of this dendrogram with the specified number of clusters.
pattern() - Method in class com.aliasi.tokenizer.RegExTokenizerFactory
Returns the regular expression pattern backing this tokenizer factory.
peek() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the highest scoring object in the priority queue, or null if the queue is empty.
peek() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the largest element in this queue according to the comparator, or null if the queue is empty.
peekLast() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns the lowest scoring object in the priority queue, or null if the queue is empty.
peekLast() - Method in class com.aliasi.util.ShortPriorityQueue
Returns the smallest element in this queue according to the comparator, or null if the queue is empty.
peekMax() - Method in class com.aliasi.util.MinMaxHeap
Returns the maximum element in the heap, or null if it is empty.
peekMin() - Method in class com.aliasi.util.MinMaxHeap
Returns the minimum element in the heap, or null if it is empty.
PerceptronClassifier<E> - Class in com.aliasi.classify
A PerceptronClassifier implements a binary classifier based on an averaged kernel-based perceptron.
PerceptronClassifier(Corpus<ObjectHandler<Classified<E>>>, FeatureExtractor<? super E>, KernelFunction, String, int, String, String) - Constructor for class com.aliasi.classify.PerceptronClassifier
Construct a perceptron classifier from the specified feature extractor, corpus with designated accept category, polynomial kernel degree and number of training iterations, and output accept and reject categories.
permutation(int) - Static method in class com.aliasi.stats.Statistics
Returns a permutation of the integers between 0 and the specified length minus one.
permutation(int, Random) - Static method in class com.aliasi.stats.Statistics
Returns a permutation of the integers between 0 and the specified length minus one using the specified randomizer.
permute(E[]) - Static method in class com.aliasi.util.Arrays
Randomly permutes the elements of the specified array using a freshly generated randomizer.
permute(E[], Random) - Static method in class com.aliasi.util.Arrays
Randomly permutes the elements of the specified array using the specified randomizer.
permute(int[]) - Static method in class com.aliasi.util.Arrays
Randomly permutes the elements of the specified integer array using a newly created randomizer.
permute(int[], Random) - Static method in class com.aliasi.util.Arrays
Randomly permutes the elements of the specified integer array using the specified randomizer.
permuteCorpus(Random) - Method in class com.aliasi.corpus.ListCorpus
Uses the specified random number generator to permute the training and test cases in the corpus.
permuteCorpus(Random) - Method in class com.aliasi.corpus.XValidatingObjectCorpus
Randomly permutes the corpus using the specified randomizer.
perTokenEval() - Method in class com.aliasi.tag.MarginalTaggerEvaluator
Returns the tagger evaluation on a per-token basis.
perTypeEvaluation(String) - Method in class com.aliasi.chunk.ChunkingEvaluation
Returns a chunking evaluation which consists of the current chunking evaluation restricted to the specified type.
phiSquared() - Method in class com.aliasi.classify.ConfusionMatrix
Returns the value of Pearson's φ2 index of mean square contingency for this matrix.
phiSquared() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the φ2 value.
phrase() - Method in class com.aliasi.coref.CachedMention
Returns the original phrase underlying this mention.
phrase() - Method in interface com.aliasi.coref.Mention
Returns the original phrase underlying this mention.
phrase() - Method in class com.aliasi.dict.DictionaryEntry
Returns the phrase for this dictionary entry.
phraseCountMap() - Method in class com.aliasi.spell.AutoCompleter
Returns the phrase counter for this auto completer.
phraseEntryIt(String) - Method in class com.aliasi.dict.AbstractDictionary
Returns an iterator over the dictionary entries with the specified phrase.
phraseEntryIt(String) - Method in interface com.aliasi.dict.Dictionary
Returns an iterator over the dictionary entries with the specified phrase.
phraseEntryIt(String) - Method in class com.aliasi.dict.MapDictionary
 
phraseEntryIt(String) - Method in class com.aliasi.dict.TrieDictionary
 
phraseEntryList(String) - Method in class com.aliasi.dict.AbstractDictionary
Returns the dictionary entries with the specified phrase.
phraseEntryList(String) - Method in interface com.aliasi.dict.Dictionary
Returns the dictionary entries with the specified phrase.
PoissonConstant - Class in com.aliasi.stats
A PoissonConstant implements a Poisson distribution with a fixed mean.
PoissonConstant(double) - Constructor for class com.aliasi.stats.PoissonConstant
Construct a constant Poisson distribution with the specified mean.
PoissonDistribution - Class in com.aliasi.stats
The PoissonDistribution abstract class is used for calculating Poisson distributions.
PoissonDistribution() - Constructor for class com.aliasi.stats.PoissonDistribution
Construct an abstract Poisson distribution.
PoissonEstimator - Class in com.aliasi.stats
A PoissonEstimator implements the maximum likelihood Poisson distribution given training events.
PoissonEstimator() - Constructor for class com.aliasi.stats.PoissonEstimator
Construct a Poisson estimator.
PoissonEstimator(double, double) - Constructor for class com.aliasi.stats.PoissonEstimator
Construct a Poisson estimator with a prior set by the specified number of samples and mean value.
poll() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns and removes the highest scoring element in this queue, or null if it is empty.
poll() - Method in class com.aliasi.util.ShortPriorityQueue
Removes and returns the largest element in this queue, or returns null if the queue is empty.
PolynomialKernel - Class in com.aliasi.matrix
A PolynomialKernel provides a dot product over a fixed degree polynomial basis expansion of a vector.
PolynomialKernel(int) - Constructor for class com.aliasi.matrix.PolynomialKernel
Construct a polynomial kernel function of the specified degree.
popMax() - Method in class com.aliasi.util.MinMaxHeap
Returns the maximum element in the heap after removing it, or returns null if the heap is empty.
popMin() - Method in class com.aliasi.util.MinMaxHeap
Returns the minimum element in the heap after removing it, or returns null if the heap is empty.
PorterStemmerTokenizerFactory - Class in com.aliasi.tokenizer
A PorterStemmerTokenizerFactory applies Porter's stemmer to the tokenizers produced by a base tokenizer factory.
PorterStemmerTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.PorterStemmerTokenizerFactory
Construct a tokenizer factory that applies Porter stemming to the tokenizers produced by the specified base factory.
position() - Method in class com.aliasi.tag.ClassifierTagger.State
Returns the current position in the input.
positiveReference() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of positive reference cases.
positiveResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the number of positive response cases.
possibleStart(String[], String[], int, int) - Method in class com.aliasi.sentences.HeuristicSentenceModel
Return true if the specified start index can be a sentence start in the specified array of tokens and whitespaces running up to the end token.
possibleStart(String[], String[], int, int) - Method in class com.aliasi.sentences.MedlineSentenceModel
Return true if the specified start index can be a sentence start in the specified array of tokens and whitespaces running up to the end token.
PotentialScaleReduction - Class in com.aliasi.stats
The PotentialScaleReduction class provides an online computationa of Rhat, the potential scale reduction statistic for measuring mixing and convergence of multiple Markov chain Monte Carlo (MCMC) samplers.
PotentialScaleReduction(int) - Constructor for class com.aliasi.stats.PotentialScaleReduction
Construct a potential scale reduction with the specified number of Markov chains for input.
PotentialScaleReduction(double[][]) - Constructor for class com.aliasi.stats.PotentialScaleReduction
Construct a potential scale reduction for the specified matrix Of estimates for each chain.
power(String, int) - Static method in class com.aliasi.util.Strings
Returns the result of concatenating the specified number of copies of the specified string.
prBreakevenPoint() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
 
prCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the precision-recall curve, interpolating if the specified flag is true.
PRE - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element pre.
pre() - Method in class com.aliasi.xml.XHtmlWriter
Start an pre element with no attributes.
pre(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an pre element with the specified attributes.
pre(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an pre element with the specified attribute and value.
pre(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an pre element with the specified attributes and values.
pre(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an pre element with the specified attributes and values.
pre(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an pre element with the specified attributes and values.
precision() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the precision.
precisionAt(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the precision score achieved by returning the top scoring documents up to (but not including) the specified rank.
precisionRecallEvaluation() - Method in class com.aliasi.chunk.ChunkingEvaluation
Return the scored precision-recall evaluation for this chunker.
PrecisionRecallEvaluation - Class in com.aliasi.classify
A PrecisionRecallEvaluation collects and reports a suite of descriptive statistics for binary classification tasks.
PrecisionRecallEvaluation() - Constructor for class com.aliasi.classify.PrecisionRecallEvaluation
Construct a precision-recall evaluation with all counts set to zero.
PrecisionRecallEvaluation(long, long, long, long) - Constructor for class com.aliasi.classify.PrecisionRecallEvaluation
Construction a precision-recall evaluation initialized with the specified counts.
PrefixedFeatureExtractor<E> - Class in com.aliasi.features
A PrefixedFeatureExtractor applies a specified prefix to all of the feature names from a base feature extractor.
PrefixedFeatureExtractor(String, FeatureExtractor<E>) - Constructor for class com.aliasi.features.PrefixedFeatureExtractor
Construct a feature extractor that adds the specified prefix to feature names extracted by the specified extractor.
prefixMatches(int) - Method in class com.aliasi.suffixarray.CharSuffixArray
Returns a list of maximal spans of suffix array indexes which refer to suffixes that share a prefix of at least the specified minimum match length.
prefixMatches(int) - Method in class com.aliasi.suffixarray.TokenSuffixArray
Returns a list of maximal spans of suffix array indexes which refer to suffixes that share a prefix of at least the specified minimum match length.
prettyPrint() - Method in class com.aliasi.cluster.Dendrogram
Returns a pretty-printed version of this dendrogram with entries on a single line and indenting with scores to show the merges.
PrimitiveInt() - Constructor for class com.aliasi.util.Iterators.PrimitiveInt
 
printPrecisionRecallCurve(double[][], PrintWriter) - Static method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Prints a precision-recall curve with F-measures.
printScorePrecisionRecallCurve(double[][], PrintWriter) - Static method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Prints a precision-recall curve with score.
prob(CharSequence) - Method in class com.aliasi.lm.CompiledNGramBoundaryLM
This method is a convenience implementation of the Model interface which returns the result of raising 2.0 to the power of the result of a call to CompiledNGramBoundaryLM.log2Estimate(CharSequence).
prob(CharSequence) - Method in class com.aliasi.lm.CompiledNGramProcessLM
This method is a convenience implementation of the Model interface which returns the result of raising 2.0 to the power of the result of a call to CompiledNGramProcessLM.log2Estimate(CharSequence).
prob(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM
This method is a convenience implementation of the Model interface which returns the result of raising 2.0 to the power of the result of a call to NGramBoundaryLM.log2Estimate(CharSequence).
prob(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM
 
prob(E) - Method in interface com.aliasi.stats.Model
Returns the probability of the specified object.
probability(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution
Returns the probability of the specified outcome in this distribution.
probability(long) - Method in class com.aliasi.stats.BernoulliDistribution
Returns the probability of the specified outcome.
probability(long) - Method in class com.aliasi.stats.BinomialDistribution
Returns the probability of the specified outcome.
probability(long) - Method in interface com.aliasi.stats.DiscreteDistribution
Returns the probability of the specified outcome.
probability(long) - Method in class com.aliasi.stats.MultivariateConstant
 
probability(String) - Method in class com.aliasi.stats.MultivariateDistribution
Returns the probability of the outcome specified by label.
probability(long) - Method in class com.aliasi.stats.MultivariateDistribution
Return the probability of the specified outcome in this multivariate distribution.
probability(long) - Method in class com.aliasi.stats.MultivariateEstimator
Returns the multivariate probability estimate for the specified outcome.
probability(long) - Method in class com.aliasi.stats.PoissonDistribution
Returns the probability estimate in this Poisson distribution for the specified outcome.
probability(long) - Method in class com.aliasi.stats.ZipfDistribution
Returns the probability of the outcome at the specified rank.
probCat(String) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns the probability estimate for the specified category.
probToken(String, String) - Method in class com.aliasi.classify.TradNaiveBayesClassifier
Returns the probability of the specified token in the specified category.
processingInstruction(String, String) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
processingInstruction(String, String) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
processingInstruction(String, String) - Method in class com.aliasi.xml.SAXWriter
Print a representation of the proecssing instruction.
processLog2Probability(String[]) - Method in class com.aliasi.lm.TokenizedLM
Returns the probability of the specified tokens in the underlying token n-gram distribution.
PROFILE - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the profile attribute.
promote(Mention, int) - Method in class com.aliasi.coref.AbstractMentionFactory
Returns a new mention chain based on the specified mention.
promote(Mention, int) - Method in interface com.aliasi.coref.MentionFactory
Returns a new mention chain based on the specified mention.
proximity() - Method in class com.aliasi.classify.KnnClassifier
Returns the proximity measure for this KNN classifier.
proximity(Vector, Vector) - Method in class com.aliasi.matrix.CosineDistance
Returns the cosine between the specified vectors.
proximity(Vector, Vector) - Method in class com.aliasi.matrix.DotProductKernel
Returns the dot product of the input vectors.
proximity(Vector, Vector) - Method in class com.aliasi.matrix.GaussianRadialBasisKernel
Returns the result of applying this Guassian radial basis kernel to the specified vectors.
proximity(Vector, Vector) - Method in class com.aliasi.matrix.HyperbolicTangentKernel
Returns the result of applying the hyperbolic tangent kernel function to to the specified vectors.
proximity(Vector, Vector) - Method in interface com.aliasi.matrix.KernelFunction
Return the result of applying the kernel function to the specified pair of vectors.
proximity(Vector, Vector) - Method in class com.aliasi.matrix.PolynomialKernel
Returns the result of applying the polynomial kernel of this class's degree to the specified vectors.
proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.EditDistance
Returns the proximity between the character sequences.
proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaccardDistance
Returns the proximity between the specified character sequences.
proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaroWinklerDistance
Return the Jaro-Winkler comparison value between the specified character sequences.
proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.TfIdfDistance
Returns the TF/IDF proximity between the specified character sequences.
proximity(CharSequence, CharSequence) - Method in class com.aliasi.spell.WeightedEditDistance
Returns the weighted proximity between the specified character sequences.
Proximity<E> - Interface in com.aliasi.util
The Proximity interface provides a general method for defining closeness between two objects.
proximity(E, E) - Method in interface com.aliasi.util.Proximity
Returns the distance between the specified pair of objects.
ProximityMatrix - Class in com.aliasi.matrix
A ProximityMatrix provides a pseudo-metric of proximities between points.
ProximityMatrix(int) - Constructor for class com.aliasi.matrix.ProximityMatrix
Construct a square proximity matrix of the specified dimensionality, with all values initially zero.
prScoreCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the array of recall/precision/score operating points according to the scores of the cases.
prune(int) - Method in class com.aliasi.lm.TrieCharSeqCounter
Removes strings with counts below the specified minimum.
prune(int) - Method in class com.aliasi.lm.TrieIntSeqCounter
Removes all counts for sequences that are less than the minimum count.
prune() - Method in class com.aliasi.util.FastCache
Prunes this cache by (approximately) dividing the counts of entries by two and removing the ones with zero counts.
prune() - Method in class com.aliasi.util.HardFastCache
Prunes this cache by (approximately) dividing the counts of entries by two and removing the ones with zero counts.
prune(int) - Method in class com.aliasi.util.ObjectToCounterMap
Removes all entries in this counter that have less than the specified minimum count.
pruneLM(int) - Method in class com.aliasi.spell.TrainSpellChecker
Prunes the underlying character language model to remove substring counts of less than the specified minimum.
pruneTokens(int) - Method in class com.aliasi.spell.TrainSpellChecker
Prunes the set of collected tokens of all tokens with count less than the specified minimum.
PruneTrieReader - Class in com.aliasi.lm
A PruneTrieReader filters a contained trie reader by removing all subtrees whose counts fall below a specified minimum.
PruneTrieReader(TrieReader, long) - Constructor for class com.aliasi.lm.PruneTrieReader
Construct a scaling trie reader wrapping the specified reader which deletes all subtrees with counts below the specified minimum.
PUNCTUATION_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer
The punctuation category.
put(E, Integer) - Method in class com.aliasi.util.BinaryMap
Adds the mapping of the specified object to the specified value if the specified number is the Integer with value 1.
put(K, V) - Method in class com.aliasi.util.FastCache
Sets the value of the specified key to the specified value.
put(K, V) - Method in class com.aliasi.util.HardFastCache
Sets the value of the specified key to the specified value.

Q

Q - Static variable in class com.aliasi.xml.XHtmlWriter
Constant for element q.
q() - Method in class com.aliasi.xml.XHtmlWriter
Start an q element with no attributes.
q(Attributes) - Method in class com.aliasi.xml.XHtmlWriter
Start an q element with the specified attributes.
q(String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an q element with the specified attribute and value.
q(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an q element with the specified attributes and values.
q(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an q element with the specified attributes and values.
q(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter
Start an q element with the specified attributes and values.
qsort(int[], Sort.CompareInt) - Static method in class com.aliasi.util.Sort
Sort the specified array of integers according to the specified comparator using quicksort.

R

randomAccuracy() - Method in class com.aliasi.classify.ConfusionMatrix
The expected accuracy from a strategy of randomly guessing categories according to reference and response distributions.
randomAccuracy() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
The probability that the reference and response are the same if they are generated randomly according to the reference and response likelihoods.
randomAccuracyUnbiased() - Method in class com.aliasi.classify.ConfusionMatrix
The expected accuracy from a strategy of randomly guessing categories according to the average of the reference and response distributions.
randomAccuracyUnbiased() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
The probability that the reference and the response are the same if the reference and response likelihoods are both the average of the sample reference and response likelihoods.
rankCount(String, int) - Method in class com.aliasi.classify.RankedClassifierEvaluator
Returns the number of times that the reference category's rank was the specified rank.
RankedClassification - Class in com.aliasi.classify
A RankedClassification provides a classification with an ordered n-best list of category results.
RankedClassification(String[]) - Constructor for class com.aliasi.classify.RankedClassification
Construct a ranked classification with the specified results ordered from best to worst.
RankedClassified<E> - Class in com.aliasi.classify
A RankedClassified represents an object that has been classified with a ranked classification.
RankedClassified(E, RankedClassification) - Constructor for class com.aliasi.classify.RankedClassified
Construct a classified object consisting of the specified object and classification.
RankedClassifier<E> - Interface in com.aliasi.classify
The RankedClassifier interface specifies a single classification method that returns n-best classifications of inputs.
RankedClassifierEvaluator<E> - Class in com.aliasi.classify
A RankedClassifierEvaluator provides an evaluation harness for ranked classifiers.
RankedClassifierEvaluator(RankedClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.RankedClassifierEvaluator
Construct a ranked classifier evaluator with the specified classifier, categories and flag indicating whether or not to store inputs.
rawToken(int) - Method in class com.aliasi.tag.StringTagging
Return the string underlying the token in the specified position.
read(ObjectInput) - Method in class com.aliasi.util.AbstractExternalizable
Read an object from the specified input stream and return it.
readBinary(int) - Method in class com.aliasi.io.BitInput
Reads the next value from the input using a fixed-length binary code of the specified number of bits.
readBit() - Method in class com.aliasi.io.BitInput
Reads the next bit from the input stream.
readBytesFromFile(File) - Static method in class com.aliasi.util.Files
Returns the array of bytes read from the specified file.
readCharsFromFile(File, String) - Static method in class com.aliasi.util.Files
Reads all of the bytes from the specified file and convert them to a character array using the specified character set.
readCount() - Method in class com.aliasi.lm.BitTrieReader
Read and return the next count from the underlying bit input.
readCount() - Method in class com.aliasi.lm.MultiTrieReader
 
readCount() - Method in interface com.aliasi.lm.TrieReader
Returns the count of the next tree.
readCounter(TrieReader, int) - Static method in class com.aliasi.lm.TrieCharSeqCounter
Reads a trie character sequence counter from the specified trie reader, restricting the result to the specified maximum n-gram.
readDelta() - Method in class com.aliasi.io.BitInput
Reads the next value from the input using an Elias delta code.
readDoubles(ObjectInput) - Static method in class com.aliasi.util.AbstractExternalizable
Return the array of doubles read from the specified object input.
readExternal(ObjectInput) - Method in class com.aliasi.util.AbstractExternalizable
Read an object from the specified input using and store it for later resolution.
readFibonacci() - Method in class com.aliasi.io.BitInput
Reads the next value from the input using a Fibonacci code.
readFloats(ObjectInput) - Static method in class com.aliasi.util.AbstractExternalizable
Return the array of floats read from the specified object input.
readFrom(InputStream) - Static method in class com.aliasi.lm.NGramBoundaryLM
Read a process language model from the specified input stream.
readFrom(InputStream) - Static method in class com.aliasi.lm.NGramProcessLM
Reads a language model from the specified input stream.
readFrom(InputStream) - Static method in class com.aliasi.lm.TrieCharSeqCounter
Reads a trie character sequence counter from the specified input stream.
readFromFile(File, String) - Static method in class com.aliasi.util.Files
Reads all of the bytes from the specified file and convert them to a string using the specified character set.
readGamma() - Method in class com.aliasi.io.BitInput
Reads the next value from the input using an Elias gamma code.
readInts(ObjectInput) - Static method in class com.aliasi.util.AbstractExternalizable
Return the array of integers read from the specified object input.
readLineArray(File, String) - Static method in class com.aliasi.io.FileLineReader
Return the array of lines read from the specified file using the specified character encoding.
readLines() - Method in class com.aliasi.io.FileLineReader
Returns the list of lines remaining to be read from this line iterator and closes all resources.
readLines(File, String) - Static method in class com.aliasi.io.FileLineReader
Return the list of lines read from the specified file using the specified character encoding.
readObject(File) - Static method in class com.aliasi.util.AbstractExternalizable
Returns the result of reading a serialized object stored in the specified file.
READONLY - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the readonly attribute.
readResolve() - Method in class com.aliasi.util.AbstractExternalizable
Returns the object read.
readResourceObject(Class<?>, String) - Static method in class com.aliasi.util.AbstractExternalizable
Return the object read from an object input stream created from the specified resource relative to the specified class.
readResourceObject(String) - Static method in class com.aliasi.util.AbstractExternalizable
Returns the object read from an object input stream created from the specified absolute path name for a resource.
readRice(int) - Method in class com.aliasi.io.BitInput
Reads the next number from the input using a Rice coding with the specified number of fixed bits for the remainder.
readSymbol() - Method in class com.aliasi.lm.BitTrieReader
Read and return the next symbol from the underlying bit input.
readSymbol() - Method in class com.aliasi.lm.MultiTrieReader
 
readSymbol() - Method in interface com.aliasi.lm.TrieReader
Returns the identifier of the symbol leading from the root of the current tree to the daughter subtree for the symbol, or -1 if there are no more subtrees for the current node.
readUnary() - Method in class com.aliasi.io.BitInput
Reads the next value from the input using a unary code.
readUTFs(ObjectInput) - Static method in class com.aliasi.util.AbstractExternalizable
Return the array of strings read from the specified object input.
reallocate(E[], int) - Static method in class com.aliasi.util.Arrays
Returns a copy of the specified array of objects of the specified size.
reallocate(int[], int) - Static method in class com.aliasi.util.Arrays
Returns a copy of the specified array of integers of the specified size.
reallocate(int[]) - Static method in class com.aliasi.util.Arrays
Reallocates the specified integer array to be 50 percent longer, with a minimum growth in length of one element.
recall() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the recall.
recallAtN() - Method in class com.aliasi.tag.NBestTaggerEvaluator
Return an array of recall values indexed by rank.
receivedError(int, double, double) - Method in class com.aliasi.stats.AnnealingSchedule
Receive a report from an optimizer about the effect of the specified learning rate in the specified epoch and return true if the update producing the error should be accepted or rejected.
reciprocalRank() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation
Returns the reciprocal rank for this evaluation.
recluster(Set<Set<E>>, Set<E>, Reporter) - Method in class com.aliasi.cluster.KMeansClusterer
Recluster the specified initial clustering, adding in the unclustered elements, reporting progress to the specified reporter.
referenceEntropy() - Method in class com.aliasi.classify.ConfusionMatrix
The entropy of the decision problem itself as defined by the counts for the reference.
referenceLikelihood() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the sample reference likelihood, or prevalence, which is the number of positive references divided * by the total number of cases.
RegExChunker - Class in com.aliasi.chunk
A RegExChunker finds chunks that matches regular expressions.
RegExChunker(String, String, double) - Constructor for class com.aliasi.chunk.RegExChunker
Construct a chunker based on the specified regular expression, producing the specified chunk type and score.
RegExChunker(Pattern, String, double) - Constructor for class com.aliasi.chunk.RegExChunker
Construct a chunker based on the specified regular expression pattern, producing the specified chunk type and score.
RegExFilteredTokenizerFactory - Class in com.aliasi.tokenizer
A RegExFilteredTokenizerFactory modifies the tokens returned by a base tokenizer factory's tokizer by removing those that do not match a regular expression pattern.
RegExFilteredTokenizerFactory(TokenizerFactory, Pattern) - Constructor for class com.aliasi.tokenizer.RegExFilteredTokenizerFactory
Construct a regular-expression filtered tokenizer factory from the specified base factory and regular expression pattern that accepted tokens must match.
RegExTokenizerFactory - Class in com.aliasi.tokenizer
A RegExTokenizerFactory creates a tokenizer factory out of a regular expression.
RegExTokenizerFactory(String) - Constructor for class com.aliasi.tokenizer.RegExTokenizerFactory
Construct a regular expression tokenizer factory using the specified regular expression for matching.
RegExTokenizerFactory(String, int) - Constructor for class com.aliasi.tokenizer.RegExTokenizerFactory
Construct a regular expression tokenizer factory using the specified regular expression for matching according to the specified flags.
RegExTokenizerFactory(Pattern) - Constructor for class com.aliasi.tokenizer.RegExTokenizerFactory
Construct a regular expression tokenizer factory with the specified pattern for matching.
RegressionPrior - Class in com.aliasi.stats
A RegressionPrior instance represents a prior distribution on parameters for linear or logistic regression.
rejectCategory() - Method in class com.aliasi.classify.BinaryLMClassifier
Returns the category assigned to non-matching/rejected cases.
rejectionPrecision() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the rejection prection, or selectivity, value.
rejectionRecall() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the rejection recall, or specificity, value.
REL - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the rel attribute.
relativeAbsoluteDifference(double, double) - Static method in class com.aliasi.util.Math
Returns the relative absolute difference between the specified values, defined to be:
remove(Object) - Method in class com.aliasi.util.BinaryMap
Remove the mapping with the specified key if it is present, returning the previous value, or null if it was previously undefined.
remove() - Method in class com.aliasi.util.BoundedPriorityQueue
Returns and removes the highest scoring element in this queue, throwing an exception if it is empty.
remove(Object) - Method in class com.aliasi.util.BoundedPriorityQueue
Removes the specified object from the priority queue.
remove(Object) - Method in class com.aliasi.util.CompactHashSet
Removes the specified object from the set, returning true if the object was present before the remove.
remove() - Method in class com.aliasi.util.Iterators.Buffered
Throws an unsupported operation exception unless overridden by a subclass.
remove() - Method in class com.aliasi.util.Iterators.Filter
This operation is not supported.
remove() - Method in class com.aliasi.util.Iterators.Modifier
Remove the next element by delegating the call to the the underlying iterator.
remove() - Method in class com.aliasi.util.Iterators.PrimitiveInt
Throws unsupported operation exception.
remove() - Method in class com.aliasi.util.ShortPriorityQueue
Returns and removes the head of this queue, throwing an exception if it is empty.
remove(Object) - Method in class com.aliasi.util.ShortPriorityQueue
Return true and remove the largest element in the queue equal to the specified object, or return false if the specified object is not in the queue.
removeAll(Collection<?>) - Method in class com.aliasi.util.BoundedPriorityQueue
 
removeAll(Collection<?>) - Method in class com.aliasi.util.CompactHashSet
Removes all the elements of the specified collection from this set, returning true if the set was modified as a result.
removeDescendants(File) - Static method in class com.aliasi.util.Files
Remove the descendants of the specified directory, but not the directory itself.
removeElement(String) - Method in class com.aliasi.xml.RemoveElementsFilter
Add the specified qualified element name to the set of elements to remove.
RemoveElementsFilter - Class in com.aliasi.xml
A RemoveElementsFilter filters out specified elements from a stream of SAX events.
RemoveElementsFilter() - Constructor for class com.aliasi.xml.RemoveElementsFilter
Construct a filter to remove elements.
RemoveElementsFilter(DefaultHandler) - Constructor for class com.aliasi.xml.RemoveElementsFilter
Construct a filter to remove elements and pass events to the specified handler.
removeMember(K, M) - Method in class com.aliasi.util.ObjectToSet
Removes the specified value from the set of values assigned to the specified key.
removeRecursive(File) - Static method in class com.aliasi.util.Files
Removes the specified file and if it is a directory, all contained files.
removeSymbol(String) - Method in class com.aliasi.symbol.MapSymbolTable
Removes the specified symbol from the symbol table.
removeSymbol(String) - Method in interface com.aliasi.symbol.SymbolTable
Removes the specified symbol from the symbol table if it was in the table and returns its identifier.
removeSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler
Throws an unsupported operation exception.
removeSynonym(String, String) - Method in class com.aliasi.coref.matchers.SynonymMatch
Ensure sthat the two phrases are no longer synonyms of each other.
replaceEntities(String, String) - Static method in class com.aliasi.util.Sgml
Returns the result of replacing all the entities appearing in the specified string with their corresponding unicode characters, using the specified replacement string for unknown entities.
replaceEntities(String) - Static method in class com.aliasi.util.Sgml
Convenience method to call Sgml.replaceEntities(String,String) with the question marked used for unknown entities.
report(LogLevel, String) - Method in class com.aliasi.io.Reporter
Reports the specified message if the specified level's severity is at or above the level of this reporter.
Reporter - Class in com.aliasi.io
A Reporter is the abstract base class on which reporters are defined that provide incremental feedback from long-running tasks at various levels of granularity.
Reporter() - Constructor for class com.aliasi.io.Reporter
Construct an instance of a reporter with log level LogLevel.NONE.
Reporter(LogLevel) - Constructor for class com.aliasi.io.Reporter
Construct an instance of a reporter with the specified log level.
Reporters - Class in com.aliasi.io
The Reporters utility class provides static factory methods for the creation of various instances of Reporter.
rescale(double) - Method in class com.aliasi.lm.TrieIntSeqCounter
Rescales all counts by multiplying them by the specified factor.
rescore(Chunking) - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker
Performs rescoring of the base chunking output using character language models.
rescore(Chunking) - Method in class com.aliasi.chunk.RescoringChunker
Returns the score for a chunking.
RescoringChunker<B extends NBestChunker> - Class in com.aliasi.chunk
A RescoringChunker provides first best, n-best and confidence chunking by rescoring n-best chunkings derived from a contained chunker.
RescoringChunker(B, int) - Constructor for class com.aliasi.chunk.RescoringChunker
Construct a rescoring chunker that contains the specified base chunker and considers the specified number of chunkings for rescoring.
reset() - Method in class com.aliasi.xml.TextAccumulatorHandler
Resets the underlying string buffer to the empty state by assigning it to a new buffer of the specified minimum length.
resetCategory(String, LanguageModel.Dynamic, int) - Method in class com.aliasi.classify.BinaryLMClassifier
resetCategory(String, L, int) - Method in class com.aliasi.classify.DynamicLMClassifier
Resets the specified category to the specified language model.
resetCount(String) - Method in class com.aliasi.stats.MultivariateEstimator
Resets the count for the specified outcome label to zero.
resolveEntity(String, String) - Method in class com.aliasi.xml.DelegatingHandler
Call delegated.
resolveEntity(String, String) - Method in class com.aliasi.xml.SAXFilterHandler
Call delegated to SAXFilterHandler.mHandler.
resolveMention(Mention, int) - Method in class com.aliasi.coref.WithinDocCoref
Resolves a specified mention at a specified offset, returning the integer identifier of the mention, or -1 if the mention could not be resolved, which should only occur for pronominal mentions.
responseEntropy() - Method in class com.aliasi.classify.ConfusionMatrix
The entropy of the response distribution.
responseLikelihood() - Method in class com.aliasi.classify.PrecisionRecallEvaluation
Returns the sample response likelihood, which is the number of positive responses divided by the total number of cases.
retainAll(Collection<?>) - Method in class com.aliasi.util.CompactHashSet
Remove all elements from this set that are not members of the specified collection, returning true if this set was modified as a result of the operation.
returnAllMatches() - Method in class com.aliasi.dict.ExactDictionaryChunker
Returns true if this chunker returns all matches.
REV - Static variable in class com.aliasi.xml.XHtmlWriter
A constant for the rev attribute.
reverse(CharSequence) - Static method in class com.aliasi.util.Strings
Return the string that is the reverse of the specified character sequence.
reverseComparator() - Static method in class com.aliasi.util.ScoredObject
Returns a comparator that sorts in descending order of score.
rHat() - Method in class com.aliasi.stats.PotentialScaleReduction
Returns the Rhat statistic as defined in the class documentation.
rightSingularVectors() - Method in class com.aliasi.matr