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A

a() - Method in class com.aliasi.util.Pair: Return the first value of the pair.
A - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element a.
a() - Method in class com.aliasi.xml.XHtmlWriter: Start an a element with no attributes.
a(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an a element with the specified attributes.
a(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an a element with the specified attribute and value.
a(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an a element with the specified attributes and values.
a(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an a element with the specified attributes and values.
a(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an a element with the specified attributes and values.
ABBR - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element abbr.
abbr() - Method in class com.aliasi.xml.XHtmlWriter: Start an abbr element with no attributes.
abbr(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an abbr element with the specified attributes.
abbr(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an abbr element with the specified attribute and value.
abbr(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an abbr element with the specified attributes and values.
abbr(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an abbr element with the specified attributes and values.
abbr(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an abbr element with the specified attributes and values.
ABBR_ATT - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the abbr attribute.
AbstractCharLmRescoringChunker<B extends NBestChunker,O extends LanguageModel.Process,C extends LanguageModel.Sequence> - Class in com.aliasi.chunk: An AbstractCharLmRescoringChunker provides the basic character language-model rescoring model used by the trainable CharLmRescoringChunker and its compiled version.
AbstractCharLmRescoringChunker(B, int, O, Map<String, Character>, Map<String, C>) - Constructor for class com.aliasi.chunk.AbstractCharLmRescoringChunker: Construct a rescoring chunker based on the specified underlying chunker, with the specified number of underlying chunkings rescored, based on the models and type encodings provided in the last three arguments.
AbstractCommand - Class in com.aliasi.util: A CommandLineArguments object represents a the command-line arguments.
AbstractCommand(String[]) - Constructor for class com.aliasi.util.AbstractCommand: Constructs a command-line arguments object from the specified arguments list using no default values.
AbstractCommand(String[], Properties) - Constructor for class com.aliasi.util.AbstractCommand: Constructs a command-line arguments object from the specified arguments using the specified properties as default values.
AbstractDictionary<C> - Class in com.aliasi.dict: An AbstractDictionary is a dictionary with convenience implementations of most methods.
AbstractDictionary() - Constructor for class com.aliasi.dict.AbstractDictionary: Construct an abstract dictionary.
AbstractDiscreteDistribution - Class in com.aliasi.stats: An AbstractDiscreteDistribution provides a default abstract implementation of discrete distributions.
AbstractDiscreteDistribution() - Constructor for class com.aliasi.stats.AbstractDiscreteDistribution: Construct an abstract discrete distribution.
AbstractExternalizable - Class in com.aliasi.util: The AbstractExternalizer is an adapter for read resolved externalizables.
AbstractExternalizable() - Constructor for class com.aliasi.util.AbstractExternalizable: Construct an abstract externalizable.
AbstractHierarchicalClusterer<E> - Class in com.aliasi.cluster: An AbstractHierachicalClusterer provides an adapter for clustering for hierarchical clusterers.
AbstractHierarchicalClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.AbstractHierarchicalClusterer: Construct an abstract hierarchical clusterer with the specified maximum distance.
AbstractHmm - Class in com.aliasi.hmm: An AbstractHmm is an abstract implementation of a hidden Markov model which manages a symbol table and defines the basic methods in terms of the symbolic linear probability methods.
AbstractHmm(SymbolTable) - Constructor for class com.aliasi.hmm.AbstractHmm: Construct an HMM with the specified symbol table.
AbstractHmmEstimator - Class in com.aliasi.hmm: An HmmEstimator may be used to train a hidden Markov model (HMM).
AbstractHmmEstimator(SymbolTable) - Constructor for class com.aliasi.hmm.AbstractHmmEstimator: Construct an HMM estimator with the specified tag symbol table.
AbstractMatrix - Class in com.aliasi.matrix: An AbstractMatrix implements most of a matrix's functionality in terms of methods for accessing numbers of rows and columns and values.
AbstractMatrix() - Constructor for class com.aliasi.matrix.AbstractMatrix: Construct an abstract matrix.
AbstractMentionChain - Class in com.aliasi.coref: An abstract implementation of a mention chain in terms of matching and killing functions.
AbstractMentionChain(Mention, int, int) - Constructor for class com.aliasi.coref.AbstractMentionChain
AbstractMentionFactory - Class in com.aliasi.coref: The AbstractMentionFactory class implements the mention factory interface using linguistically-motivated abstract methods.
AbstractMentionFactory(TokenizerFactory) - Constructor for class com.aliasi.coref.AbstractMentionFactory: Construct an abstract mention factory with the specified tokenizer factory.
AbstractSentenceModel - Class in com.aliasi.sentences: An AbstractSentenceModel implements a sentence model in terms of the method that adds indices to the collection.
AbstractSentenceModel() - Constructor for class com.aliasi.sentences.AbstractSentenceModel: Construct an abstract sentence model.
AbstractVector - Class in com.aliasi.matrix: An AbstractVector implements most of a vector's functionality in terms of methods for dimensionality and values.
AbstractVector() - Constructor for class com.aliasi.matrix.AbstractVector: Construct an abstract vector.
accept(String) - Method in class com.aliasi.io.FileExtensionFilter: Returns true if the specified file name has an acceptable suffix as specified in the constructor.
accept(File) - Method in class com.aliasi.io.FileExtensionFilter: Return true if the specified file has an an acceptable suffix as specified in the constructor.
accept(E) - Method in class com.aliasi.util.Iterators.Filter: Returns true for objects returned by the contained iterator that should be returned by this iterator.
ACCEPT - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the accept attribute.
ACCEPT_CHARSET - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the accept-charset attribute.
acceptCategory() - Method in class com.aliasi.classify.BinaryLMClassifier: Returns the category assigned to matching/accepted cases.
ACCESSKEY - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the accesskey attribute.
accuracy() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the sample accuracy of the responses.
accuracyDeviation() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the standard deviation of the accuracy.
ACRONYM - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element acronym.
acronym() - Method in class com.aliasi.xml.XHtmlWriter: Start an acronym element with no attributes.
acronym(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an acronym element with the specified attributes.
acronym(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an acronym element with the specified attribute and value.
acronym(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an acronym element with the specified attributes and values.
acronym(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an acronym element with the specified attributes and values.
acronym(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an acronym element with the specified attributes and values.
ACTION - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the action attribute.
add(Chunk) - Method in class com.aliasi.chunk.ChunkingImpl: Add a chunk this this chunking.
add(Mention, int) - Method in class com.aliasi.coref.AbstractMentionChain: Adds the specified mention appearing at the specified sentence offset to this mention chain, and calls the method AbstractMentionChain.add(Mention), which may be overridden by subclasses to carry out additional bookkeeping when new mentions are added.
add(Mention) - Method in class com.aliasi.coref.AbstractMentionChain: Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Mention, int) - Method in interface com.aliasi.coref.MentionChain: Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Mention) - Method in class com.aliasi.coref.MentionChainImpl: Adds the specified mention appearing at the specified sentence offset to this mention chain.
add(Vector) - Method in class com.aliasi.matrix.AbstractVector: Returns the result of adding the specified vector to this vector.
add(Vector) - Method in class com.aliasi.matrix.DenseVector
add(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
add(Vector) - Method in interface com.aliasi.matrix.Vector: Returns a new vector that is the reuslt of adding this vector to the specified vector.
add(char, char[]) - Static method in class com.aliasi.util.Arrays: Return the result of adding the specified character to the specified sorted character array.
add(E) - Method in class com.aliasi.util.BinaryMap: Adds the specified element to the map with value 1.
add(E) - Method in class com.aliasi.util.BoundedPriorityQueue: Throw an unsupported operation exception.
add(E) - Method in class com.aliasi.util.CompactHashSet: Add the specified object to the set if it is not already present, returning true if the set didn't already contain the element.
add(E) - Method in class com.aliasi.util.MinMaxHeap: Add the element to the heap.
addAll(Collection<Chunk>) - Method in class com.aliasi.chunk.ChunkingImpl: Adds all of the chunks in the specified collection to this chunking.
addCase(Chunking, Chunking) - Method in class com.aliasi.chunk.ChunkingEvaluation: Add an evaluation case consisting of a reference chunk set and a response chunk set.
addCase(boolean, boolean) - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Adds a case with the specified reference and response classifications.
addCase(boolean, double) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation: Add a case with the specified correctness and response score.
addCase(Chunking, Chunking) - Method in class com.aliasi.sentences.SentenceEvaluation: Add the case corresponding to the specified reference and response chunkings.
addCase(String, String) - Method in class com.aliasi.spell.SpellEvaluator: Adds a training case to the spelling evaluator in the form of input text and its corrected form.
addCase(Tagging<E>, TagLattice<E>) - Method in class com.aliasi.tag.MarginalTaggerEvaluator: Add a case for evaluation consisting of the gold-standard reference tagging and a lattice representing the output of a marginal tagger.
addCase(Tagging<E>, Iterator<ScoredTagging<E>>) - Method in class com.aliasi.tag.NBestTaggerEvaluator: Add a test case consisting of the specified reference tagging and iterator over responses.
addCase(Tagging<E>, Tagging<E>) - Method in class com.aliasi.tag.TaggerEvaluator: Add a test case to this evaluator consisting of the specified reference and response taggings.
addClassification(String, Classification, E) - Method in class com.aliasi.classify.BaseClassifierEvaluator: Adds the specified classification as a response for the specified reference category.
addDefaultProperty(String, String) - Method in class com.aliasi.util.AbstractCommand: Adds the specified key and value as default arguments.
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.AbstractDictionary: Adds the specified dictionary entry to the dictionary.
addEntry(DictionaryEntry<C>) - Method in interface com.aliasi.dict.Dictionary: Adds the specified dictionary entry to the dictionary.
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.MapDictionary
addEntry(DictionaryEntry<C>) - Method in class com.aliasi.dict.TrieDictionary: Equal entries will be ignored.
AddFeatureExtractor<E> - Class in com.aliasi.features: An AddFeatureExtractor returns feature vectors that result from summing the feature vectors returned by a collection of contained feature extractors.
AddFeatureExtractor(Collection<? extends FeatureExtractor<? super E>>) - Constructor for class com.aliasi.features.AddFeatureExtractor: Construct an additive feature extractor from the specified collection of extractors.
AddFeatureExtractor(FeatureExtractor<? super E>, FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.AddFeatureExtractor: Construct an additive feature extractor from the specified pair of extractors.
AddFeatureExtractor(FeatureExtractor<? super E>...) - Constructor for class com.aliasi.features.AddFeatureExtractor: Construct an additive feature extractor from the specified extractors.
addHonorific(String) - Method in class com.aliasi.coref.AbstractMentionChain: Add the specified honorific to the set of honorifics for this chain.
addInterceptFeature() - Method in class com.aliasi.classify.LogisticRegressionClassifier: Returns true if this classifier automatically adds an intercept feature to each feature vector.
addInterceptFeature() - Method in class com.aliasi.crf.ChainCrf: Returns true if this CRF adds an intercept feature with value 1.0 at index 0 to all feature vectors.
addMember(K, M) - Method in class com.aliasi.util.ObjectToSet: Add a member to the value of the set mapped to by the specified key.
addMembers(K, Set<? extends M>) - Method in class com.aliasi.util.ObjectToSet: Adds a set of members to the value of the set mapped to by the specified key.
addMisses(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation: Incrments the positive reference count without adding a case from the classifier.
addNegativeMisses(int) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation: Incrments the negative reference count without adding a case from the classifier.
ADDRESS - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element address.
address() - Method in class com.aliasi.xml.XHtmlWriter: Start an address element with no attributes.
address(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an address element with the specified attributes.
address(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an address element with the specified attribute and value.
address(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an address element with the specified attributes and values.
address(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an address element with the specified attributes and values.
address(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an address element with the specified attributes and values.
addSimpleAttribute(AttributesImpl, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler: Add a local name and value to an attributes implementation as type "CDATA".
addState(String) - Method in class com.aliasi.hmm.AbstractHmm: Adds the state with the specified name to this hidden Markov model.
addSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler: Add a symbol to the symbol table to be compiled.
addSynonym(String, String) - Method in class com.aliasi.coref.matchers.SynonymMatch: Adds the two phrases as synonyms for one another.
addTest(E) - Method in class com.aliasi.corpus.ListCorpus: Add the specified item to the list of test items.
addTrain(E) - Method in class com.aliasi.corpus.ListCorpus: Add the specified item to the list of training items.
ALIGN - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the align attribute.
allDigits(String) - Static method in class com.aliasi.util.Strings: Returns true if all of the characters making up the specified string are digits.
allDigits(char[], int, int) - Static method in class com.aliasi.util.Strings: Returns true if all of the characters in the specified range are digits.
allLetters(char[]) - Static method in class com.aliasi.util.Strings: Returns true if all of the characters in the specified array are letters.
allLowerCase(char[]) - Static method in class com.aliasi.util.Strings: Returns true if all of the characters in the specified array are lower case letters.
allLowerCase(CharSequence) - Static method in class com.aliasi.util.Strings: Returns true if the specified character sequence contains only lowercase letters.
allowDelete() - Method in class com.aliasi.spell.CompiledSpellChecker: Returns true if this spell checker allows deletions.
allowInsert() - Method in class com.aliasi.spell.CompiledSpellChecker: Returns true if this spell checker allows insertions.
allowMatch() - Method in class com.aliasi.spell.CompiledSpellChecker: Returns true if this spell checker allows matches.
allowsRejection() - Method in class com.aliasi.stats.AnnealingSchedule: Return true if this annealing schedule allows updates to be rejected.
allowSubstitute() - Method in class com.aliasi.spell.CompiledSpellChecker: Returns true if this spell checker allows substitutions.
allowTranspose() - Method in class com.aliasi.spell.CompiledSpellChecker: Returns true if this spell checker allows transpositions.
allPunctuation(char[]) - Static method in class com.aliasi.util.Strings: Returns true if all of the characters in the specified array are punctuation as specified by Strings.isPunctuation(char).
allPunctuation(String) - Static method in class com.aliasi.util.Strings: Returns true if all of the characters in the specified string are punctuation as specified by Strings.isPunctuation(char).
allSymbols(char[]) - Static method in class com.aliasi.util.Strings: Returns true if none of the characters in the specified array are letters or digits.
allUpperCase(char[]) - Static method in class com.aliasi.util.Strings: Returns true if all of the characters in the specified array are upper case letters.
allWhitespace(StringBuilder) - Static method in class com.aliasi.util.Strings: Returns true if the specified buffer contains only whitespace characters.
allWhitespace(String) - Static method in class com.aliasi.util.Strings: Returns true if the specified string contains only whitespace characters.
allWhitespace(char[], int, int) - Static method in class com.aliasi.util.Strings: Returns true if the specified range of the specified character array only whitespace characters, as defined for characters by Strings.isWhitespace(char c).
ALT - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the alt attribute.
AnnealingSchedule - Class in com.aliasi.stats: An AnnealingSchedule instance implements a method to return the learning rate for a specified epoch.
AnnealingSchedule() - Constructor for class com.aliasi.stats.AnnealingSchedule: Do-nothing constructor to be used by concrete implementations.
APPLET - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element applet.
applet() - Method in class com.aliasi.xml.XHtmlWriter: Start an applet element with no attributes.
applet(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an applet element with the specified attributes.
applet(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an applet element with the specified attribute and value.
applet(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an applet element with the specified attributes and values.
applet(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an applet element with the specified attributes and values.
applet(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an applet element with the specified attributes and values.
ApproxDictionaryChunker - Class in com.aliasi.dict: An ApproxDictionaryChunker implements a chunker that produces chunks based on weighted edit distance of strings from dictionary entries.
ApproxDictionaryChunker(TrieDictionary<String>, TokenizerFactory, WeightedEditDistance, double) - Constructor for class com.aliasi.dict.ApproxDictionaryChunker: Construct an approximate dictionary chunker from the specified dictionary, tokenizer factory, weighted edit distance and distance bound.
ARCHIVE - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the archive attribute.
AREA - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element area.
area() - Method in class com.aliasi.xml.XHtmlWriter: Start an area element with no attributes.
area(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an area element with the specified attributes.
area(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an area element with the specified attribute and value.
area(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an area element with the specified attributes and values.
area(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an area element with the specified attributes and values.
area(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an area element with the specified attributes and values.
areaUnderPrCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation: Returns the area under the curve (AUC) for the recall-precision curve with interpolation as specified.
areaUnderRocCurve(boolean) - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation: Returns the area under the receiver operating characteristic (ROC) curve.
array(E[]) - Static method in class com.aliasi.util.Iterators: Returns an iterator over the specified array of objects.
Arrays - Class in com.aliasi.util: Static utility methods for processing arrays.
arraySlice(E[], int, int) - Static method in class com.aliasi.util.Iterators: Returns a newly constructed iterator over the specified object array slice.
arrayToString(Object[]) - Static method in class com.aliasi.util.Arrays: Returns the concatenation of the string representations of the specified objects separated by commas, with the whole surrounded by square brackets and separated by a comma.
arrayToStringBuilder(StringBuilder, Object[]) - Static method in class com.aliasi.util.Arrays: Appends to the string buffer the concatenation of the string representations of the specified objects separated by commas, with the whole surrounded by square brackets and separated by a comma.
ASCII - Static variable in class com.aliasi.util.Strings: String representing the ASCII encoding for characters.
asSet(E...) - Static method in class com.aliasi.util.CollectionUtils: Return the hash set consisting of adding the specified argument to a newly constructed set.
asSymbolTable(String[]) - Static method in class com.aliasi.symbol.SymbolTableCompiler: Returns a compiled symbol table constructed from the specified list of symbols with symbol identifiers determined by array position.
AutoCompleter - Class in com.aliasi.spell: An AutoCompleter maintains a dictionary of phrases with counts and provides suggested completions based on prefix matching by weighted edit distance and phrase likelihood.
AutoCompleter(Map<String, ? extends Number>, WeightedEditDistance, int, int, double) - Constructor for class com.aliasi.spell.AutoCompleter: Construct an automatic completer from the specified phrases, phrase counts, edit distance, and search parameters.
available() - Method in class com.aliasi.io.BitInput: Returns number of bits available for reading without blocking.
averageConditionalProbability(String, String) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator: Returns the average conditional probability of the specified response category for test cases with the specified reference category.
averageConditionalProbabilityReference() - Method in class com.aliasi.classify.ConditionalClassifierEvaluator: Returns the average over all test cases of the conditional probability of the response that matches the reference category.
averageLog2JointProbability(String, String) - Method in class com.aliasi.classify.JointClassifierEvaluator: Returns the average log (base 2) joint probability of the response category for cases of the specified reference category.
averageLog2JointProbabilityReference() - Method in class com.aliasi.classify.JointClassifierEvaluator: Returns the average over all test cases of the joint log (base 2) probability of the response that matches the reference category.
averagePrecision() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation: Returns the average of precisions at the true positive results.
averageRank(String, String) - Method in class com.aliasi.classify.RankedClassifierEvaluator: Returns the average rank of the specified response category for test cases with the specified reference category.
averageRankReference() - Method in class com.aliasi.classify.RankedClassifierEvaluator: Returns the average over all test samples of the rank of the the response that matches the reference category.
averageScore(String, String) - Method in class com.aliasi.classify.ScoredClassifierEvaluator: Returns the average score of the specified response category for test cases with the specified reference category.
averageScoreReference() - Method in class com.aliasi.classify.ScoredClassifierEvaluator: Returns the average over all test cases of the score of the response that matches the reference category.
AXIS - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the axis attribute.

B

b() - Method in class com.aliasi.util.Pair: Return the second value of the pair.
B - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element b.
b() - Method in class com.aliasi.xml.XHtmlWriter: Start an b element with no attributes.
b(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an b element with the specified attributes.
b(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an b element with the specified attribute and value.
b(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an b element with the specified attributes and values.
b(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an b element with the specified attributes and values.
b(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an b element with the specified attributes and values.
b3ClusterF() - Method in class com.aliasi.cluster.ClusterScore: Returns the F_₁ measure of the B³ precision and recall metrics with equal cluster weighting.
b3ClusterPrecision() - Method in class com.aliasi.cluster.ClusterScore: Returns the precision as defined by B³ metric with equal cluster weighting.
b3ClusterRecall() - Method in class com.aliasi.cluster.ClusterScore: Returns the recall as defined by B³ metric with equal cluster weighting.
b3ElementF() - Method in class com.aliasi.cluster.ClusterScore: Returns the F_₁ measure of the B³ precision and recall metrics with equal element weighting.
b3ElementPrecision() - Method in class com.aliasi.cluster.ClusterScore: Returns the precision as defined by B³ metric with equal element weighting.
b3ElementRecall() - Method in class com.aliasi.cluster.ClusterScore: Returns the recall as defined by B³ metric with equal element weighting.
balanceParens() - Method in class com.aliasi.sentences.HeuristicSentenceModel: Returns true if this model does parenthesis balancing.
BARE_ARG_PREFIX - Static variable in class com.aliasi.util.AbstractCommand: The string prefixed before a number to indicate bare arguments.
bareArguments() - Method in class com.aliasi.util.AbstractCommand: Returns the array of bare arguments, in order, supplied on the command line.
BASE - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element base.
base() - Method in class com.aliasi.xml.XHtmlWriter: Start an base element with no attributes.
base(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an base element with the specified attributes.
base(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an base element with the specified attribute and value.
base(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an base element with the specified attributes and values.
base(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an base element with the specified attributes and values.
base(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an base element with the specified attributes and values.
baseChunker() - Method in class com.aliasi.chunk.RescoringChunker: The base chunker that generates hypotheses to rescore.
BaseClassifier<E> - Interface in com.aliasi.classify: The BaseClassifier interface specifies a single method for first-best classification.
BaseClassifierEvaluator<E> - Class in com.aliasi.classify: A BaseClassifierEvaluator provides an evaluation harness for first-best classifiers.
BaseClassifierEvaluator(BaseClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.BaseClassifierEvaluator: Construct a classifier evaluator for the specified classifier that records results for the specified set of categories, storing cases or not based on the specified flag.
baseExtractor() - Method in class com.aliasi.features.FeatureExtractorFilter: Returns the contained feature extractor.
baseFeatureExtractors() - Method in class com.aliasi.features.AddFeatureExtractor: Returns an unmodifiable view of the list of base feature extractors for this additive feature extractor.
BASEFONT - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element basefont.
basefont() - Method in class com.aliasi.xml.XHtmlWriter: Start an basefont element with no attributes.
basefont(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an basefont element with the specified attributes.
basefont(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an basefont element with the specified attribute and value.
basefont(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an basefont element with the specified attributes and values.
basefont(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an basefont element with the specified attributes and values.
basefont(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an basefont element with the specified attributes and values.
baseName(File) - Static method in class com.aliasi.util.Files: Returns prefix of the file's name, defined as the part of the name before the final period, or the whole name if there is no final period.
baseTokenizerFactory() - Method in class com.aliasi.tokenizer.ModifiedTokenizerFactory: Return the base tokenizer factory.
baseTokenizerFactory() - Method in class com.aliasi.tokenizer.TokenNGramTokenizerFactory: Return the base tokenizer factory used to generate the underlying tokens from which n-grams are generated.
basisDistribution() - Method in class com.aliasi.stats.MultinomialDistribution: Returns the multivariate distribution that forms the basis of this multinomial distribution.
bayesTopicEstimate(int[], int, int, int, Random) - Method in class com.aliasi.cluster.LatentDirichletAllocation: Return the Bayesian point estimate of the topic distribution for a document consisting of the specified tokens, using Gibbs sampling with the specified parameters.
BDO - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element bdo.
bdo() - Method in class com.aliasi.xml.XHtmlWriter: Start an bdo element with no attributes.
bdo(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an bdo element with the specified attributes.
bdo(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an bdo element with the specified attribute and value.
bdo(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an bdo element with the specified attributes and values.
bdo(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an bdo element with the specified attributes and values.
bdo(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an bdo element with the specified attributes and values.
BEGIN_TAG_PREFIX - Static variable in class com.aliasi.chunk.BioTagChunkCodec: Default prefix for begin tags, "B_".
BernoulliClassifier<E> - Class in com.aliasi.classify: A BernoulliClassifier provides a feature-based classifier where feature values are reduced to booleans based on a specified threshold.
BernoulliClassifier(FeatureExtractor<E>) - Constructor for class com.aliasi.classify.BernoulliClassifier: Construct a Bernoulli classifier with the specified feature extractor and the default feature activation threshold of 0.0.
BernoulliClassifier(FeatureExtractor<E>, double) - Constructor for class com.aliasi.classify.BernoulliClassifier: Construct a Bernoulli classifier with the specified feature extractor and specified feature activation threshold.
BernoulliConstant - Class in com.aliasi.stats: A BernoulliConstant implements a Bernoulli distribution with a constant probability of success.
BernoulliConstant(double) - Constructor for class com.aliasi.stats.BernoulliConstant: Construct a constant Bernoulli distribution with the specified success probability.
BernoulliDistribution - Class in com.aliasi.stats: A BernoulliDistribution is a multivariate distribution with two outcomes, 0 (labeled "failure") and 1 (labeled "success").
BernoulliDistribution() - Constructor for class com.aliasi.stats.BernoulliDistribution: Construct a Bernoulli distribution.
bernoulliDistribution() - Method in class com.aliasi.stats.BinomialDistribution: Returns the underlying Bernoulli (two outcome) distribution underlying this binomial distribution.
BernoulliEstimator - Class in com.aliasi.stats: A BernoulliEstimator provides a maximum likelihood estimate of a Bernoulli distribution.
BernoulliEstimator() - Constructor for class com.aliasi.stats.BernoulliEstimator: Construct a Bernoulli estimator with zero counts.
bestCategory() - Method in class com.aliasi.classify.Classification: Returns the best-scoring category.
BIG - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element big.
big() - Method in class com.aliasi.xml.XHtmlWriter: Start an big element with no attributes.
big(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an big element with the specified attributes.
big(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an big element with the specified attribute and value.
big(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an big element with the specified attributes and values.
big(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an big element with the specified attributes and values.
big(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an big element with the specified attributes and values.
BigVectorClassifier - Class in com.aliasi.classify: A BigVectorClassifier provides an efficient linear classifier implementation for large numbers of categories.
BigVectorClassifier(Vector[], int) - Constructor for class com.aliasi.classify.BigVectorClassifier: Construct a big vector classifier with the specified term vectors, maximum number of results, and categories equal to the string representations of the category identifiers.
BigVectorClassifier(Vector[], String[], int) - Constructor for class com.aliasi.classify.BigVectorClassifier: Construct a big vector classifier with the specified term vectors, categories, and maximum number of results.
BinaryLMClassifier - Class in com.aliasi.classify: A BinaryLMClassifier is a boolean dynamic language model classifier for use when there are two categories, but training data is only available for one of the categories.
BinaryLMClassifier(LanguageModel.Dynamic, double) - Constructor for class com.aliasi.classify.BinaryLMClassifier: Construct a binary character sequence classifier that accepts or rejects inputs based on their cross-entropy being above or below a fixed cross-entropy threshold.
BinaryLMClassifier(LanguageModel.Dynamic, double, String, String) - Constructor for class com.aliasi.classify.BinaryLMClassifier: Construct a binary character sequence classifier that accepts or rejects inputs based on their cross-entropy being above or below a fixed cross-entropy threshold.
BinaryMap<E> - Class in com.aliasi.util: The BinaryMap class implements a map from objects to integer objects where the only value is the integer with value 1.
BinaryMap() - Constructor for class com.aliasi.util.BinaryMap: Construct a binary map with an initial capacity of zero.
BinaryMap(int) - Constructor for class com.aliasi.util.BinaryMap: Construct a binary map with the specified initial capacity.
BinaryMap(Set<E>) - Constructor for class com.aliasi.util.BinaryMap: Construct a binary map based on the specified set of positive values.
BinomialDistribution - Class in com.aliasi.stats: A BinomialDistribution is a discrete distribution over the number of successes given a fixed number of Bernoulli trials.
BinomialDistribution(BernoulliDistribution, int) - Constructor for class com.aliasi.stats.BinomialDistribution: Construct a binomial distribution that samples from the specified Bernoulli distribution the specified number of times.
BioTagChunkCodec - Class in com.aliasi.chunk: The BioTagChunkCodec implements a chunk to tag coder/decoder based on the BIO encoding scheme and a specified tokenizer factory.
BioTagChunkCodec() - Constructor for class com.aliasi.chunk.BioTagChunkCodec: Construct a BIO-encoded tag/chunk decoder with a null tokenizer that does not enforce consistency and uses the default begin, in, and out tags.
BioTagChunkCodec(TokenizerFactory, boolean) - Constructor for class com.aliasi.chunk.BioTagChunkCodec: Construct a BIO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and tagging coded if the specified flag is set, and using the default being, in, and out tags.
BioTagChunkCodec(TokenizerFactory, boolean, String, String, String) - Constructor for class com.aliasi.chunk.BioTagChunkCodec: Construct a BIO-encoding based tag-chunk coder/decoder based on the specified tokenizer factory, enforcing consistency of chunkings and tagging coded if the specified flag is set.
BitInput - Class in com.aliasi.io: A BitInput wraps an underlying input stream to provide bit-level input.
BitInput(InputStream) - Constructor for class com.aliasi.io.BitInput: Constructs a bit input wrapping the specified input stream.
BitOutput - Class in com.aliasi.io: A BitOutput wraps an underlying output stream to provide bit-level output.
BitOutput(OutputStream) - Constructor for class com.aliasi.io.BitOutput: Construct a bit output wrapping the specified output stream.
BitTrieReader - Class in com.aliasi.lm: A BitTrieReader provides a trie reader that wraps a bit-level input.
BitTrieReader(BitInput) - Constructor for class com.aliasi.lm.BitTrieReader: Construct a bit trie reader from the specified bit input.
BitTrieWriter - Class in com.aliasi.lm: A BitTrieWriter provides a trie writer that wraps a bit-level output.
BitTrieWriter(BitOutput) - Constructor for class com.aliasi.lm.BitTrieWriter: Construct a bit trie writer from the specified bit output with the specified maximum n-gram.
BLOCKQUOTE - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element blockquote.
blockquote() - Method in class com.aliasi.xml.XHtmlWriter: Start an blockquote element with no attributes.
blockquote(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an blockquote element with the specified attributes.
blockquote(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an blockquote element with the specified attribute and value.
blockquote(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an blockquote element with the specified attributes and values.
blockquote(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an blockquote element with the specified attributes and values.
blockquote(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an blockquote element with the specified attributes and values.
BODY - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element body.
body() - Method in class com.aliasi.xml.XHtmlWriter: Start an body element with no attributes.
body(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an body element with the specified attributes.
body(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an body element with the specified attribute and value.
body(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an body element with the specified attributes and values.
body(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an body element with the specified attributes and values.
body(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an body element with the specified attributes and values.
BooleanMatcherAdapter - Class in com.aliasi.coref: Provides a means of implementing a Matcher that returns a constant value if a boolean condition is satisifed and the no-match score otherwise.
BooleanMatcherAdapter(int) - Constructor for class com.aliasi.coref.BooleanMatcherAdapter: Construct a boolean matcher adapter that returns the specified score.
BORDER - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the border attribute.
BOUNDARY_TOKEN - Static variable in class com.aliasi.lm.TokenizedLM: The symbol used for boundaries in the counter, -2.
boundaryIndices(String[], String[]) - Method in class com.aliasi.sentences.AbstractSentenceModel: Returns an array of indices of sentence-final tokens.
boundaryIndices(String[], String[], int, int) - Method in class com.aliasi.sentences.AbstractSentenceModel: Returns an array of indices of sentence-final tokens for the slice of the token and whitespace arrays specified.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in class com.aliasi.sentences.AbstractSentenceModel: Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in class com.aliasi.sentences.HeuristicSentenceModel: Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
boundaryIndices(String[], String[]) - Method in interface com.aliasi.sentences.SentenceModel: Returns an array of indices of sentence-final tokens.
boundaryIndices(String[], String[], int, int, Collection<Integer>) - Method in interface com.aliasi.sentences.SentenceModel: Adds the sentence final token indices as Integer instances to the specified collection, only considering tokens between index start and end-1 inclusive.
BoundedFeatureExtractor<E> - Class in com.aliasi.features: A BoundedFeatureExtractor provides a lower-bound and upper-bound on feature values between which all values from a contained base extractor are bounded.
BoundedFeatureExtractor(FeatureExtractor<? super E>, double, double) - Constructor for class com.aliasi.features.BoundedFeatureExtractor: Construct a bounded feature extractor that bounds the feature values produced by the specified extractor to be within the specified minimum and maximum values.
BoundedPriorityQueue<E> - Class in com.aliasi.util: A BoundedPriorityQueue implements a priority queue with an upper bound on the number of elements.
BoundedPriorityQueue(Comparator<? super E>, int) - Constructor for class com.aliasi.util.BoundedPriorityQueue: Construct a bounded priority queue which uses the specified comparator to order elements and allows up to the specified maximum number of elements.
BR - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element br.
br() - Method in class com.aliasi.xml.XHtmlWriter: Start an br element with no attributes.
br(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an br element with the specified attributes.
br(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an br element with the specified attribute and value.
br(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an br element with the specified attributes and values.
br(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an br element with the specified attributes and values.
br(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an br element with the specified attributes and values.
bufferNext() - Method in class com.aliasi.util.Iterators.Buffered: Returns the next object for this iterator, or null if there are no more objects.
BUTTON - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element button.
button() - Method in class com.aliasi.xml.XHtmlWriter: Start an button element with no attributes.
button(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an button element with the specified attributes.
button(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an button element with the specified attribute and value.
button(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an button element with the specified attributes and values.
button(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an button element with the specified attributes and values.
button(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an button element with the specified attributes and values.
byteAsUnsigned(byte) - Static method in class com.aliasi.util.Math: Returns the integer value of reading the specified byte as an unsigned value.
bytesToHex(byte[]) - Static method in class com.aliasi.util.Strings: Returns a hexadecimal string-based representation of the specified byte array.

C

cache() - Method in class com.aliasi.features.CacheFeatureExtractor: Returns the cache for this cached feature extractor.
CachedMention - Class in com.aliasi.coref: A CachedMention stores all of the retun values specified by the Mention interface.
CachedMention(String, String, Set<String>, String[], String, boolean) - Constructor for class com.aliasi.coref.CachedMention: Construct a cached mention from the specified return values.
CacheFeatureExtractor<E> - Class in com.aliasi.features: A CacheFeatureExtractor uses a cache to store a mapping from objects to their feature vector maps.
CacheFeatureExtractor(FeatureExtractor<? super E>, Map<E, Map<String, ? extends Number>>) - Constructor for class com.aliasi.features.CacheFeatureExtractor: Construct a cached feature extractor that caches the results of the specified extractor using the specified cache.
capitalized(char[]) - Static method in class com.aliasi.util.Strings: Returns true if the first character in the specified array is an upper case letter and all subsequent characters are lower case letters.
CAPTION - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element caption.
caption() - Method in class com.aliasi.xml.XHtmlWriter: Start an caption element with no attributes.
caption(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an caption element with the specified attributes.
caption(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an caption element with the specified attribute and value.
caption(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an caption element with the specified attributes and values.
caption(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an caption element with the specified attributes and values.
caption(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an caption element with the specified attributes and values.
CASE_RESTORING - Static variable in class com.aliasi.spell.CompiledSpellChecker: A weighted edit distance ordered by similarity that treats case variants as zero cost and all other edits as infinite cost.
caseAccuracy() - Method in class com.aliasi.tag.TaggerEvaluator: Return the accuracy at the entire case level.
cases() - Method in class com.aliasi.chunk.ChunkingEvaluation: Return the set of cases consisting of pairs of reference and response chunkings.
caseSensitive() - Method in class com.aliasi.dict.ExactDictionaryChunker: Returns true if this dictionary chunker is case sensitive.
categories() - Method in class com.aliasi.classify.BaseClassifierEvaluator: Returns a copy of the the categories for which this evaluator stores results.
categories() - Method in class com.aliasi.classify.BernoulliClassifier: Returns a copy of the list the categories for this classifier.
categories() - Method in class com.aliasi.classify.ConfusionMatrix: Return a copy of the array of categories for this confusion matrix.
categories() - Method in class com.aliasi.classify.KnnClassifier: Returns a copy of he current list of categories for this classifier.
categories() - Method in class com.aliasi.classify.LMClassifier: Returns the array of categories for this classifier.
categories() - Method in class com.aliasi.classify.TfIdfClassifierTrainer: Return an unmodifiable view of the underlying set of categories seen in the training data.
categories() - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer: Returns a copy of the array of categories used by this categorizer.
categories() - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer: Returns a copy of the array of strings representing all the categories produced by this categorizer.
categories() - Method in interface com.aliasi.tokenizer.TokenCategorizer: Returns an array of all available categories produced by this categorizer.
categorize(String) - Method in class com.aliasi.tokenizer.CharacterTokenCategorizer: Returns the category of the specified token.
categorize(String) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer: Returns the type of a token, based on its structure or other information.
categorize(String) - Method in interface com.aliasi.tokenizer.TokenCategorizer: Returns the category string for the specified token.
CATEGORIZER - Static variable in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer: This is a constant Indo-European token categorizer.
category(int) - Method in class com.aliasi.classify.RankedClassification: Returns the category with the specified rank in the classification.
category() - Method in class com.aliasi.dict.DictionaryEntry: Returns the category for this dictionary entry.
categoryDistribution() - Method in class com.aliasi.classify.LMClassifier: Returns a multivariate distribution over categories for this classifier.
categoryEntryIt(C) - Method in class com.aliasi.dict.AbstractDictionary: Returns an iterator over the dictionary entries with the specified category.
categoryEntryIt(C) - Method in interface com.aliasi.dict.Dictionary: Returns an iterator over the dictionary entries with the specified category.
categoryEntryList(C) - Method in class com.aliasi.dict.AbstractDictionary: Returns the dictionary entries with the specified category.
categoryEntryList(C) - Method in interface com.aliasi.dict.Dictionary: Returns the dictionary entries with the specified category.
categorySet() - Method in class com.aliasi.classify.TradNaiveBayesClassifier: Returns a set of categories for this classifier.
categorySymbols() - Method in class com.aliasi.classify.LogisticRegressionClassifier: Returns a copy of the category symbols used by this classifier in the same order as used by the underlying logistic regression model.
cauchy(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior: Returns the Cauchy prior with the specified prior squared scales for the dimensions.
cauchy(double[]) - Static method in class com.aliasi.stats.RegressionPrior: Returns the Cauchy prior for the specified squared scales.
CDATA_ATTS_TYPE - Static variable in class com.aliasi.xml.SimpleElementHandler: The type of character data attributes.
CELLPADDING - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the cellpadding attribute.
CELLSPACING - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the cellspacing attribute.
CENTER - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element center.
center() - Method in class com.aliasi.xml.XHtmlWriter: Start an center element with no attributes.
center(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an center element with the specified attributes.
center(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an center element with the specified attribute and value.
center(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an center element with the specified attributes and values.
center(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an center element with the specified attributes and values.
center(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an center element with the specified attributes and values.
ChainCrf<E> - Class in com.aliasi.crf: The ChainCrf<E> class implements linear chain conditional random field decoding and estimation for input token sequences of type E.
ChainCrf(String[], Vector[], SymbolTable, ChainCrfFeatureExtractor<E>, boolean) - Constructor for class com.aliasi.crf.ChainCrf: Construct a conditional random field from the specified tags, feature vector coefficients, symbol table for feature, feature extractors and flag indicating whether to add intercepts or not.
ChainCrf(String[], boolean[], boolean[], boolean[][], Vector[], SymbolTable, ChainCrfFeatureExtractor<E>, boolean) - Constructor for class com.aliasi.crf.ChainCrf: Construct a conditional random field from the specified tags, feature vector coefficients, symbol table for feature, feature extractors and flag indicating whether to add intercepts or not.
ChainCrfChunker - Class in com.aliasi.crf: A ChainCrfChunker implements chunking based on a chain CRF over string sequences, a tokenizer factory, and a tag to chunk coder/decoder.
ChainCrfChunker(ChainCrf<String>, TokenizerFactory, TagChunkCodec) - Constructor for class com.aliasi.crf.ChainCrfChunker: Construct a chunker based on the specified chain conditional random field, tokenizer factory and tag-chunk coder/decoder.
ChainCrfFeatureExtractor<E> - Interface in com.aliasi.crf: The ChainCrfFeatureExtractor interface specifies a method for conditional random fields to extract the necessary node and edge features for estimation and tagging.
ChainCrfFeatures<E> - Class in com.aliasi.crf: The ChainCrfFeatures interface specifies methods for extracting node and edge features for a conditional random field.
ChainCrfFeatures(List<E>, List<String>) - Constructor for class com.aliasi.crf.ChainCrfFeatures: Construct a chain CRF feature set for the specified lists of input tokens and possible output tags.
CHAR - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the char attribute.
characters() - Method in class com.aliasi.tag.StringTagging: Returns the characters underlying this string tagging.
characters(char[], int, int) - Method in class com.aliasi.xml.DelegatingHandler: Call delegated or ignored.
characters(char[], int, int) - Method in class com.aliasi.xml.GroupCharactersFilter: Adds the characters to the character accumulator.
characters(char[], int, int) - Method in class com.aliasi.xml.SAXFilterHandler: Call delegated to SAXFilterHandler.mHandler.
characters(char[], int, int) - Method in class com.aliasi.xml.SAXWriter: Prints the characters in the specified range.
characters(String) - Method in class com.aliasi.xml.SimpleElementHandler: Converts the string to a character array in order to call DefaultHandler.characters(char[],int,int) to handle the characters.
characters(char[]) - Method in class com.aliasi.xml.SimpleElementHandler: Handls the specified character array by delegation to DefaultHandler.characters(char[],int,int).
characters(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler: Converts the string to a character array in order to call DefaultHandler.characters(char[],int,int) to handle the characters.
characters(DefaultHandler, char[]) - Static method in class com.aliasi.xml.SimpleElementHandler: Handls the specified character array by delegation to DefaultHandler.characters(char[],int,int).
characters(char[], int, int) - Method in class com.aliasi.xml.TextAccumulatorHandler: Adds the specified character slice to the string buffer.
characters(char[], int, int) - Method in class com.aliasi.xml.TextContentFilter: Handle character content, delegating unfiltered characters to the contained handler, and delegating filtered characters to TextContentFilter.filteredCharacters(char[],int,int).
charactersFollowing(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter: Returns the array of characters that have been observed following the specified character slice in unicode order.
charactersFollowing(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
charactersFollowing(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
CharacterTokenCategorizer - Class in com.aliasi.tokenizer: Returns a category for tokens made up out of a single character.
CharacterTokenizerFactory - Class in com.aliasi.tokenizer: A CharacterTokenizerFactory considers each non-whitespace character in the input to be a distinct token.
CharLmHmmChunker - Class in com.aliasi.chunk: A CharLmHmmChunker employs a hidden Markov model estimator and tokenizer factory to learn a chunker.
CharLmHmmChunker(TokenizerFactory, AbstractHmmEstimator) - Constructor for class com.aliasi.chunk.CharLmHmmChunker: Construct a CharLmHmmChunker from the specified tokenizer factory and hidden Markov model estimator.
CharLmHmmChunker(TokenizerFactory, AbstractHmmEstimator, boolean) - Constructor for class com.aliasi.chunk.CharLmHmmChunker: Construct a CharLmHmmChunker from the specified tokenizer factory, HMM estimator and tag-smoothing flag.
CharLmRescoringChunker - Class in com.aliasi.chunk: A CharLmRescoringChunker provides a long-distance character language model-based chunker that operates by rescoring the output of a contained character language model HMM chunker.
CharLmRescoringChunker(TokenizerFactory, int, int, int, double) - Constructor for class com.aliasi.chunk.CharLmRescoringChunker: Construct a character language model rescoring chunker based on the specified components.
CharLmRescoringChunker(TokenizerFactory, int, int, int, double, boolean) - Constructor for class com.aliasi.chunk.CharLmRescoringChunker: Construct a character language model rescoring chunker based on the specified components.
CHAROFF - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the charoff attribute.
CharSeqCounter - Interface in com.aliasi.lm: A CharSeqCounter counter provides counts for sequences of characters.
CharSeqMultiCounter - Class in com.aliasi.lm: A CharSeqMultiCounter combines the counts from a pair of character sequence counters.
CharSeqMultiCounter(CharSeqCounter[]) - Constructor for class com.aliasi.lm.CharSeqMultiCounter: Construct a character sequence counter from the specified array of counters.
CharSeqMultiCounter(CharSeqCounter, CharSeqCounter) - Constructor for class com.aliasi.lm.CharSeqMultiCounter: Construct a multi-counter from the specified pair of counters.
charSequence() - Method in class com.aliasi.chunk.ChunkAndCharSeq: Return the underlying character sequence for this chunk.
charSequence() - Method in interface com.aliasi.chunk.Chunking: Returns the character sequence underlying this chunking.
charSequence() - Method in class com.aliasi.chunk.ChunkingImpl: Returns the character sequence underlying this chunking.
CHARSET - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the charset attribute.
charsetName() - Method in class com.aliasi.xml.SAXWriter: Returns the name of the character set being used by this writer.
CharSuffixArray - Class in com.aliasi.suffixarray: A CharSuffixArray implements a suffix array of characters.
CharSuffixArray(String) - Constructor for class com.aliasi.suffixarray.CharSuffixArray: Construct a suffix array from the specified string, with no bound on suffix length.
CharSuffixArray(String, int) - Constructor for class com.aliasi.suffixarray.CharSuffixArray: Construct a suffix array from the specified string, bounding comparisons for sorting by the specified maximum suffix length.
checkArgsStartEnd(char[], int, int) - Static method in class com.aliasi.util.Strings: Throws an exception if the start and end plus one indices are not in the range for the specified array of characters.
CHECKED - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the checked attribute.
checkParameterImplication(String, String) - Method in class com.aliasi.util.AbstractCommand: Throws an illegal argument exception if the first parameter is defined in the command the second parameter is not.
chiSquared() - Method in class com.aliasi.classify.ConfusionMatrix: Returns Pearson's C_₂ independence test statistic for this matrix.
chiSquared() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the χ² value.
chiSquared(int[]) - Method in class com.aliasi.stats.MultinomialDistribution: Returns the chi-squared statistic for rejecting the null hypothesis that the specified samples were generated by this distribution.
chiSquaredDegreesOfFreedom() - Method in class com.aliasi.classify.ConfusionMatrix: Return the number of degrees of freedom of this confusion matrix for the χ² statistic.
chiSquaredIndependence(int[]) - Method in class com.aliasi.lm.TokenizedLM: Returns the maximum value of Pearson's C_₂ independence test statistic resulting from splitting the specified n-gram in half to derive a contingency matrix.
chiSquaredIndependence(double, double, double, double) - Static method in class com.aliasi.stats.Statistics: Returns Pearson's C_₂ goodness-of-fit statistic for independence over the specified binary contingency matrix.
chiSquaredIndependence(double[][]) - Static method in class com.aliasi.stats.Statistics: Returns the value of Pearson's C_₂ goodness of fit statistic for independence over the specified contingency matrix.
choiceLogProbs(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser: Return an array of (natural) log choice probabilities corresponding to the input array of choices.
choiceProbs(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser: Return an array of choice probabilities corresponding to the input array of choices.
choose(Vector[]) - Method in class com.aliasi.dca.DiscreteChooser: Returns the most likely choice among the choices in the specified array of vectors.
chooser() - Method in class com.aliasi.dca.DiscreteObjectChooser: Returns the discrete chooser on which this object chooser is based.
Chunk - Interface in com.aliasi.chunk: The Chunk interface specifies a slice of a character sequence, a chunk type and a chunk score.
chunk() - Method in class com.aliasi.chunk.ChunkAndCharSeq: Return the chunk underlying this compositie chunk and character sequence.
chunk(CharSequence) - Method in interface com.aliasi.chunk.Chunker: Return the chunking of the specified character sequence.
chunk(char[], int, int) - Method in interface com.aliasi.chunk.Chunker: Return the chunking of the specified character slice.
chunk(char[], int, int) - Method in class com.aliasi.chunk.HmmChunker: Returns a chunking of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.HmmChunker: Returns a chunking of the specified character sequence.
chunk(CharSequence) - Method in class com.aliasi.chunk.RegExChunker: Return the chunking of the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.RegExChunker: Return the chunking of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.RescoringChunker: Returns the first-best chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.RescoringChunker: Returns the first-best chunking for the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.chunk.TokenShapeChunker: Return the set of named-entity chunks derived from the uderlying decoder over the tokenization of the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.chunk.TokenShapeChunker: Return the set of named-entity chunks derived from the underlying decoder over the tokenization of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.crf.ChainCrfChunker
chunk(char[], int, int) - Method in class com.aliasi.crf.ChainCrfChunker
chunk(CharSequence) - Method in class com.aliasi.dict.ApproxDictionaryChunker: Return the approximate dictionary-based chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.dict.ApproxDictionaryChunker: Return the approximate dictionary-based chunking for the specified character sequence.
chunk(CharSequence) - Method in class com.aliasi.dict.ExactDictionaryChunker: Returns the chunking for the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.dict.ExactDictionaryChunker: Returns the chunking for the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.sentences.SentenceChunker: Return the chunking derived from the underlying sentence model over the tokenization of the specified character slice.
chunk(char[], int, int) - Method in class com.aliasi.sentences.SentenceChunker: Return the chunking derived from the underlying sentence model over the tokenization of the specified character slice.
chunk(CharSequence) - Method in class com.aliasi.tokenizer.TokenChunker: Return the chunking produced by tokenizing the specified character sequence.
chunk(char[], int, int) - Method in class com.aliasi.tokenizer.TokenChunker: Return the chunking produced by tokenizing the specified character array slice.
ChunkAndCharSeq - Class in com.aliasi.chunk: The ChunkAndCharSeq is an immutable composite of a chunk and a character sequence.
ChunkAndCharSeq(Chunk, CharSequence) - Constructor for class com.aliasi.chunk.ChunkAndCharSeq: Construct a composite of the specified chunk and sequence.
Chunker - Interface in com.aliasi.chunk: The Chunker interface specifies methods for returning a chunking given a character sequence or character slice.
chunker() - Method in class com.aliasi.chunk.ChunkerEvaluator: Returns the underlying chunker for this evaluator.
ChunkerEvaluator - Class in com.aliasi.chunk: The ChunkerEvaulator class provides an evaluation framework for chunkers.
ChunkerEvaluator(Chunker) - Constructor for class com.aliasi.chunk.ChunkerEvaluator: Construct an evaluator for the specified chunker.
ChunkerFeatureExtractor - Class in com.aliasi.features: A ChunkerFeatureExtractor implements a feature extractor for character sequences based on a specified chunker.
ChunkerFeatureExtractor(Chunker, boolean) - Constructor for class com.aliasi.features.ChunkerFeatureExtractor: Construct a new chunker feature extractor based on the specified chunker, including the phrases extracted if the specified flag is true.
ChunkFactory - Class in com.aliasi.chunk: The ChunkFactory provides static factory methods for creating chunks from components.
Chunking - Interface in com.aliasi.chunk: The Chunking interface specifies a set of chunks over a shared underlying character sequence.
ChunkingEvaluation - Class in com.aliasi.chunk: A ChunkingEvaluation stores and reports the results of evaluating response chunkings against reference chunkings.
ChunkingEvaluation() - Constructor for class com.aliasi.chunk.ChunkingEvaluation: Construct a chunking evaluation.
chunkingEvaluation() - Method in class com.aliasi.sentences.SentenceEvaluation: Return the chunking evaluation for this sentence evaluation.
ChunkingImpl - Class in com.aliasi.chunk: A ChunkingImpl provides a mutable, set-based implementation of the chunking interface.
ChunkingImpl(CharSequence) - Constructor for class com.aliasi.chunk.ChunkingImpl: Constructs a chunking implementation to hold chunks over the specified character sequence.
ChunkingImpl(char[], int, int) - Constructor for class com.aliasi.chunk.ChunkingImpl: Construct a chunking implementation to hold chunks over the specified character slice.
chunkingToStringTagging(TagChunkCodec, ObjectHandler<Chunking>) - Static method in class com.aliasi.chunk.TagChunkCodecAdapters: Return the string tagging handler that converts string taggings to chunkings.
chunkingToTagging(TagChunkCodec, ObjectHandler<Chunking>) - Static method in class com.aliasi.chunk.TagChunkCodecAdapters: Returns the tagging handler that converts taggings to chunkings using the specified codec.
chunkLM(String) - Method in class com.aliasi.chunk.AbstractCharLmRescoringChunker: Returns the sequence language model for chunks of the specified type.
chunkSet() - Method in interface com.aliasi.chunk.Chunking: Returns the chunks for this chunking.
chunkSet() - Method in class com.aliasi.chunk.ChunkingImpl: Return an unmodifiable view of the set of chunks for this chunking.
CITE - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element cite.
cite() - Method in class com.aliasi.xml.XHtmlWriter: Start an cite element with no attributes.
cite(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an cite element with the specified attributes.
cite(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an cite element with the specified attribute and value.
cite(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an cite element with the specified attributes and values.
cite(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an cite element with the specified attributes and values.
cite(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an cite element with the specified attributes and values.
CITE_ATT - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the cite attribute.
CLASS - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the class attribute.
CLASSID - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the classid attribute.
Classification - Class in com.aliasi.classify: A Classification provides a first-best category.
Classification(String) - Constructor for class com.aliasi.classify.Classification: Construct a classification with the specified first-best category.
Classified<E> - Class in com.aliasi.classify: A Classified represents an object that has been classified with a first-best classification.
Classified(E, Classification) - Constructor for class com.aliasi.classify.Classified: Construct a classified object consisting of the specified object and classification.
classifier() - Method in class com.aliasi.classify.BaseClassifierEvaluator: Returns the classifier for this evaluator.
classifier() - Method in class com.aliasi.classify.ConditionalClassifierEvaluator: Return the classifier being evaluated.
classifier() - Method in class com.aliasi.classify.JointClassifierEvaluator: Return the classifier being evaluated.
classifier() - Method in class com.aliasi.classify.RankedClassifierEvaluator: Return the classifier being evaluated.
classifier() - Method in class com.aliasi.classify.ScoredClassifierEvaluator: Return the classifier being evaluated.
classify(E) - Method in interface com.aliasi.classify.BaseClassifier: Returns the first-best classification for the specified input.
classify(E) - Method in class com.aliasi.classify.BernoulliClassifier: Classify the specified input using this Bernoulli classifier.
classify(Vector) - Method in class com.aliasi.classify.BigVectorClassifier: Return a scored classification consisting of the top results for the specified vector input.
classify(E) - Method in interface com.aliasi.classify.ConditionalClassifier: Returns the n-best conditional probability classification for the specified input.
classify(E) - Method in interface com.aliasi.classify.JointClassifier: Returns the n-best joint probability classification for the specified input.
classify(E) - Method in class com.aliasi.classify.KnnClassifier: Return the k-nearest-neighbor classification result for the specified input object.
classify(CharSequence) - Method in class com.aliasi.classify.LMClassifier: Returns the joint classification of the specified character sequence.
classify(E) - Method in class com.aliasi.classify.LogisticRegressionClassifier: Return the conditional classification of the specified object using logistic regression classification.
classify(E) - Method in class com.aliasi.classify.PerceptronClassifier: Return the scored classification for the specified input.
classify(E) - Method in interface com.aliasi.classify.RankedClassifier: Return the n-best classification of the specified object.
classify(E) - Method in interface com.aliasi.classify.ScoredClassifier: Returns the n-best scored classification for the specified input.
classify(CharSequence) - Method in class com.aliasi.classify.TradNaiveBayesClassifier: Return the classification of the specified character sequence.
classify(Vector) - Method in class com.aliasi.stats.LogisticRegression: Returns an array of conditional probabilities indexed by outcomes for the specified input vector.
classify(Vector, double[]) - Method in class com.aliasi.stats.LogisticRegression: Fills the specified array with the conditional probabilities indexed by outcomes for the specified input vector.
classifyFeatures(Map<String, ? extends Number>) - Method in class com.aliasi.classify.LogisticRegressionClassifier: Return the conditional classification of a feature map using this classifier.
classifyJoint(char[], int, int) - Method in class com.aliasi.classify.LMClassifier: A convenience method returning a joint classification over a character array slice.
classifyVector(Vector) - Method in class com.aliasi.classify.LogisticRegressionClassifier: Returns the classification of the specified vector using the logistic regression model underlying this classifier.
clear() - Method in class com.aliasi.symbol.MapSymbolTable: Clears all of the symbols from the symbol table.
clear() - Method in interface com.aliasi.symbol.SymbolTable: Removes all the symbols from the symbol table.
clear() - Method in class com.aliasi.symbol.SymbolTableCompiler: Throws an unsupported operation exception.
clear() - Method in class com.aliasi.util.BinaryMap: Removes all of the mappings from this map.
clear() - Method in class com.aliasi.util.BoundedPriorityQueue: Removes all elements from this queue.
clear() - Method in class com.aliasi.util.CompactHashSet: Remove all of the elements from this set.
clear() - Method in class com.aliasi.util.FastCache: Removes all entries from this cache.
clear() - Method in class com.aliasi.util.ShortPriorityQueue: Removes all the elements from the priority queue.
clearSynonyms() - Method in class com.aliasi.coref.matchers.SynonymMatch: Removes all synonym pairs from this synonym matcher.
close() - Method in class com.aliasi.io.BitInput: Closes this input stream and releases associated resources.
close() - Method in class com.aliasi.io.BitOutput: Closes underlying output stream and releases any resources associated with the stream.
close() - Method in class com.aliasi.io.Reporter: Close this reporter and free all resources associated with it.
closeInputSource(InputSource) - Static method in class com.aliasi.util.Streams: Close the specified input source.
closeInputStream(InputStream) - Static method in class com.aliasi.util.Streams: Deprecated. Use Streams.closeQuietly(Closeable) instead.
closeOutputStream(OutputStream) - Static method in class com.aliasi.util.Streams: Deprecated. Use Streams.closeQuietly(Closeable) instead.
closeQuietly(Closeable) - Static method in class com.aliasi.util.Streams: Closes the closeable without raising exceptions.
closeReader(Reader) - Static method in class com.aliasi.util.Streams: Deprecated. Use Streams.closeQuietly(Closeable) instead.
closeWriter(Writer) - Static method in class com.aliasi.util.Streams: Deprecated. Use Streams.closeQuietly(Closeable) instead.
cluster(Set<? extends E>) - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer: Returns the clustering of the specified elements.
cluster(Set<? extends E>) - Method in interface com.aliasi.cluster.Clusterer: Return a clustering of the specified set of elements.
cluster(Set<? extends E>) - Method in class com.aliasi.cluster.KMeansClusterer: Return a k-means clustering of the specified set of elements using a freshly generated random number generator without intermediate reporting.
cluster(Set<? extends E>, Random, Reporter) - Method in class com.aliasi.cluster.KMeansClusterer: Return the k-means clustering for the specified set of elements, using the specified random number generator, sending progress reports to the specified reporter.
Clusterer<E> - Interface in com.aliasi.cluster: The Clusterer interface defines a means of clustering a set of input elements
ClusterScore<E> - Class in com.aliasi.cluster: A ClusterScore provides a range of cluster scoring metrics for reference partitions versus response partitions.
ClusterScore(Set<? extends Set<? extends E>>, Set<? extends Set<? extends E>>) - Constructor for class com.aliasi.cluster.ClusterScore: Construct a cluster score object from the specified reference and response partitions.
CODE - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element code.
code() - Method in class com.aliasi.xml.XHtmlWriter: Start an code element with no attributes.
code(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an code element with the specified attributes.
code(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an code element with the specified attribute and value.
code(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an code element with the specified attributes and values.
code(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an code element with the specified attributes and values.
code(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an code element with the specified attributes and values.
CODEBASE - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the codebase attribute.
codec() - Method in class com.aliasi.crf.ChainCrfChunker: Returns the tag/chunk coder/decoder for this chunker.
CODETYPE - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the codetype attribute.
coefficients() - Method in class com.aliasi.crf.ChainCrf: Return the coefficient vectors for this CRF.
coefficients() - Method in class com.aliasi.dca.DiscreteChooser: Return an unmodifiable view of the coefficients underlying this discrete chooser.
COL - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element col.
col() - Method in class com.aliasi.xml.XHtmlWriter: Start an col element with no attributes.
col(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an col element with the specified attributes.
col(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an col element with the specified attribute and value.
col(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an col element with the specified attributes and values.
col(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an col element with the specified attributes and values.
col(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an col element with the specified attributes and values.
COLGROUP - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element colgroup.
colgroup() - Method in class com.aliasi.xml.XHtmlWriter: Start an colgroup element with no attributes.
colgroup(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an colgroup element with the specified attributes.
colgroup(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an colgroup element with the specified attribute and value.
colgroup(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an colgroup element with the specified attributes and values.
colgroup(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an colgroup element with the specified attributes and values.
colgroup(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an colgroup element with the specified attributes and values.
CollectionUtils - Class in com.aliasi.util: The CollectionUtils class provides static utility methods for dealing with Java collections.
collocationSet(int, int, int) - Method in class com.aliasi.lm.TokenizedLM: Returns an array of collocations in order of confidence that their token sequences are not independent.
COLS - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the cols attribute.
COLSPAN - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the colspan attribute.
columnVector(int) - Method in class com.aliasi.matrix.AbstractMatrix: Returns the specified column of this matrix.
columnVector(int) - Method in interface com.aliasi.matrix.Matrix: Returns the vector of values in the specified column.
com.aliasi.chunk - package com.aliasi.chunk: Classes for extracting meaningful chunks (spans) of text.
com.aliasi.classify - package com.aliasi.classify: Classes for classifying data and evaluation.
com.aliasi.cluster - package com.aliasi.cluster: Classes for clustering data and evaluation.
com.aliasi.coref - package com.aliasi.coref: Classes for determining entity coreference within documents.
com.aliasi.coref.matchers - package com.aliasi.coref.matchers: Classes for matching and killing functions.
com.aliasi.corpus - package com.aliasi.corpus: Classes for parsing and handling various corpora.
com.aliasi.crf - package com.aliasi.crf: Classes and interfaces for conditional random fields.
com.aliasi.dca - package com.aliasi.dca: Classes for fitting and running discrete choice analysis (DCA) models.
com.aliasi.dict - package com.aliasi.dict: Classes for handling dictionaries.
com.aliasi.features - package com.aliasi.features: Classes for extracting feature vectors from objects and parsing objects for feature handlers.
com.aliasi.hmm - package com.aliasi.hmm: Classes for estimating and decoding hidden Markov models.
com.aliasi.io - package com.aliasi.io: Classes to handle input, output, file selection, and logging.
com.aliasi.lm - package com.aliasi.lm: Classes for character- and token-based language models.
com.aliasi.matrix - package com.aliasi.matrix: Classes for matrices and vectors.
com.aliasi.sentences - package com.aliasi.sentences: Classes for sentence-boundary detection.
com.aliasi.spell - package com.aliasi.spell: Classes for spelling correction and edit distance.
com.aliasi.stats - package com.aliasi.stats: Classes for handling basic statical distributions and estimators.
com.aliasi.suffixarray - package com.aliasi.suffixarray: Classes for spelling correction and edit distance.
com.aliasi.symbol - package com.aliasi.symbol: Classes for string-based symbol tables.
com.aliasi.tag - package com.aliasi.tag: Classes and interfaces for sequence tagging, including evaluators.
com.aliasi.tokenizer - package com.aliasi.tokenizer: Classes for tokenizing character sequences.
com.aliasi.util - package com.aliasi.util: Classes for general Java utilities.
com.aliasi.xml - package com.aliasi.xml: Classes for XML, including SAX filters and file visitors.
CommaSeparatedValues - Class in com.aliasi.util: A CommaSeparatedValues object represents a two-dimensional array of strings which may be read and written in comma-separated-value string representation.
CommaSeparatedValues(File, String) - Constructor for class com.aliasi.util.CommaSeparatedValues: Construct a comma-separated values array from the specified file using the specified character set.
CommaSeparatedValues(InputStream, String) - Constructor for class com.aliasi.util.CommaSeparatedValues: Construct a comma-separated values array from the specified input stream using the specified character set.
CommaSeparatedValues(Reader) - Constructor for class com.aliasi.util.CommaSeparatedValues: Construct a comma-separated values array from the specified reader.
comment(char[], int, int) - Method in class com.aliasi.xml.SAXWriter: Convenience method to write a slice of character data as a comment.
comment(String) - Method in class com.aliasi.xml.SAXWriter: Write the specified string as a comment.
CompactHashSet<E> - Class in com.aliasi.util: A CompactHashSet implements the set interface more tightly in memory and more efficiently than Java's HashSet.
CompactHashSet(int) - Constructor for class com.aliasi.util.CompactHashSet: Construct a compact hash set with the specified initial capacity.
CompactHashSet(E...) - Constructor for class com.aliasi.util.CompactHashSet: Construct a compact hash set containing the specified list of values.
COMPARATOR - Static variable in enum com.aliasi.io.LogLevel: Returns a comparator that compares levels by severity.
comparator() - Method in class com.aliasi.util.BoundedPriorityQueue: Returns the comparator for this sorted set.
comparator() - Static method in class com.aliasi.util.ScoredObject: Returns a comparator that sorts in ascending order of score.
comparator() - Method in class com.aliasi.util.ShortPriorityQueue: Returns the comparator for this priority queue.
Compilable - Interface in com.aliasi.util: The Compilable interface specifies a general way in which an object may be compiled to an object output.
compile(Compilable) - Static method in class com.aliasi.util.AbstractExternalizable: Return the compiled form of the specified compilable.
CompiledNGramBoundaryLM - Class in com.aliasi.lm: A CompiledNGramBoundaryLM is constructed by reading the serialized form of an instance of NGramBoundaryLM.
CompiledNGramProcessLM - Class in com.aliasi.lm: A CompiledNGramProcessLM implements a conditional process language model.
CompiledSpellChecker - Class in com.aliasi.spell: The CompiledSpellChecker class implements a first-best spell checker based on models of what users are likely to mean and what errors they are likely to make in expressing their meaning.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, TokenizerFactory, Set<String>, int, double, double, double) - Constructor for class com.aliasi.spell.CompiledSpellChecker: Construct a compiled spell checker based on the specified language model and similarity edit distance, set of valid output tokens, maximum n-best size per character, and the specified edit penalities for editing known tokens or the first or second characters of tokens.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, TokenizerFactory, Set<String>, int) - Constructor for class com.aliasi.spell.CompiledSpellChecker: Construct a compiled spell checker based on the specified language model and edit distance, tokenizer factory, the set of valid output tokens, and maximum n-best size, with default known token and first and second character edit costs.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, Set<String>, int) - Constructor for class com.aliasi.spell.CompiledSpellChecker: Construct a compiled spell checker based on the specified language model and edit distance, a null tokenizer factory, the set of valid output tokens, and maximum n-best size, with default known token and first and second character edit costs.
CompiledSpellChecker(CompiledNGramProcessLM, WeightedEditDistance, Set<String>) - Constructor for class com.aliasi.spell.CompiledSpellChecker: Construct a compiled spell checker based on the specified language model and edit distance, with a null tokenizer factory, the specified set of valid output tokens, with default value for n-best size, known token edit cost and first and second character edit costs.
CompiledTokenizedLM - Class in com.aliasi.lm: A CompiledTokenizedLM implements a tokenized bounded sequence language model.
compileOrSerialize(Object, ObjectOutput) - Static method in class com.aliasi.util.AbstractExternalizable: Compile the object to the output if it is compilable, else serialize it to the output if it is serializable but not compilable.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.CharLmHmmChunker: Compiles this model to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.CharLmRescoringChunker: Compiles this model to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.RegExChunker: Compiles this regular-expression chunker to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.chunk.TrainTokenShapeChunker: Compiles a chunker based on the training data received by this trainer to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.DynamicLMClassifier: Writes a compiled version of this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.KnnClassifier: Compiles this k-nearest-neighbor classifier to the specified object output stream.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.LogisticRegressionClassifier: Compile this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.TfIdfClassifierTrainer: Compile this trainer to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.classify.TradNaiveBayesClassifier: Compile this classifier to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.AbstractDictionary: Compiles this dictionary to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.DictionaryEntry: Compiles this dictionary entry to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.MapDictionary: Serializes the object to the specified output.
compileTo(ObjectOutput) - Method in class com.aliasi.dict.TrieDictionary: Compile the entries in this dictionary to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.hmm.AbstractHmmEstimator: Compiles a copy of this estimated HMM to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.hmm.HmmCharLmEstimator
compileTo(ObjectOutput) - Method in class com.aliasi.lm.NGramBoundaryLM: Writes a compiled version of this boundary language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.NGramProcessLM: Writes a compiled version of this process language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.TokenizedLM: Writes a compiled version of this tokenized language model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.UniformBoundaryLM: Writes a compiled version of this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.lm.UniformProcessLM: Writes a compiled version of this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.spell.FixedWeightEditDistance: Writes a compiled version of this edit distance to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.spell.TrainSpellChecker: Writes a compiled spell checker to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.BernoulliEstimator: Compiles this Bernoulli estimator to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.LogisticRegression: Compiles this model to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.MultivariateEstimator: Writes a constant version of this estimator to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.PoissonConstant: Compiles an instance of this constant Poisson distribution to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.stats.PoissonEstimator: Writes a constant Poisson distribution with the same mean as the current value of this Poisson distribution's mean.
compileTo(ObjectOutput) - Method in class com.aliasi.symbol.SymbolTableCompiler: Compiles the symbol table to the specified object output.
compileTo(ObjectOutput) - Method in class com.aliasi.tokenizer.IndoEuropeanTokenCategorizer: Compiles this token categorizer to the specified object output.
compileTo(Compilable, File) - Static method in class com.aliasi.util.AbstractExternalizable: Compiles the specified compilable object to the specified file.
compileTo(ObjectOutput) - Method in interface com.aliasi.util.Compilable: Compile this object to the specified object output.
complete(String) - Method in class com.aliasi.spell.AutoCompleter: Returns a set of scored phrases sorted into decreasing order of score.
CompleteLinkClusterer<E> - Class in com.aliasi.cluster: A CompleteLinkClusterer implements complete link agglomerative clustering.
CompleteLinkClusterer(double, Distance<? super E>) - Constructor for class com.aliasi.cluster.CompleteLinkClusterer: Construct a complete link clusterer with the specified distance bound.
CompleteLinkClusterer(Distance<? super E>) - Constructor for class com.aliasi.cluster.CompleteLinkClusterer: Construct a complete link clusterer with no distance bound.
concatenate(char[], char) - Static method in class com.aliasi.util.Arrays: Returns the array of characters consisting of the members of the first specified array followed by the specified character.
concatenate(String[], String[]) - Static method in class com.aliasi.util.Arrays: Returns a new array of strings containing the elements of the first array of strings specified followed by the elements of the second array of strings specified.
concatenate(Object[]) - Static method in class com.aliasi.util.Strings: Concatenate the elements of the specified array as strings, separating with the default separator Strings.DEFAULT_SEPARATOR_STRING.
concatenate(Object[], String) - Static method in class com.aliasi.util.Strings: Concatenate the elements of the specified array as strings, separating with the specified string spacer.
concatenate(Object[], int, String) - Static method in class com.aliasi.util.Strings: Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through the rest of the string, separating with the specified string spacer.
concatenate(Object[], int, int) - Static method in class com.aliasi.util.Strings: Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through one element before the specified end index, separating with the default spacer Strings.DEFAULT_SEPARATOR_STRING.
concatenate(Object[], int, int, String) - Static method in class com.aliasi.util.Strings: Concatenate the elements of the specified array as strings, starting at the object at the specified index and continuing through one element before the specified end index, separating with the specified spacer.
ConditionalClassification - Class in com.aliasi.classify: A ConditionalClassification is a scored classification which estimates conditional probabilities of categories given an input.
ConditionalClassification(String[], double[]) - Constructor for class com.aliasi.classify.ConditionalClassification: Construct a conditional classification with the specified categories and conditional probabilities which sum to one within the default tolerance of 0.01.
ConditionalClassification(String[], double[], double[]) - Constructor for class com.aliasi.classify.ConditionalClassification: Construct a conditional classification with the specified categories, scores and conditional probabilities which sum to one within the default tolerance of 0.01.
ConditionalClassification(String[], double[], double) - Constructor for class com.aliasi.classify.ConditionalClassification: Construct a conditional classification with the specified categories and conditional probabilities whose probabilities sum to one within the specified tolerance.
ConditionalClassification(String[], double[], double[], double) - Constructor for class com.aliasi.classify.ConditionalClassification: Construct a conditional classification with the specified categories and conditional probabilities whose probabilities sum to one within the specified tolerance.
ConditionalClassifier<E> - Interface in com.aliasi.classify: The ConditionalClassifier interface specifies a single method for n-best classification with conditional category probabilities.
ConditionalClassifierEvaluator<E> - Class in com.aliasi.classify: A ConditionalClassifierEvaluator provides an evaluation harness for conditional probability-based n-best classifiers.
ConditionalClassifierEvaluator(ConditionalClassifier<E>, String[], boolean) - Constructor for class com.aliasi.classify.ConditionalClassifierEvaluator: Construct a scored classifier evaluator with the specified classifier, categories and flag indicating whether or not to store inputs.
conditionalEntropy(int) - Method in class com.aliasi.classify.ConfusionMatrix: Returns the entropy of the distribution of categories in the response given that the reference category was as specified.
conditionalEntropy() - Method in class com.aliasi.classify.ConfusionMatrix: Returns the conditional entropy of the response distribution against the reference distribution.
conditionalOneVersusAll(String) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator: Returns a scored precision-recall evaluation of the classifcation of the specified reference category versus all other categories using the conditional probability scores.
conditionalProbability(int) - Method in class com.aliasi.classify.ConditionalClassification: Returns the conditional probability estimate for the category at the specified rank.
conditionalProbability(String) - Method in class com.aliasi.classify.ConditionalClassification: Returns the conditional probability estimate for the specified category.
confidence(double) - Method in class com.aliasi.classify.ConfusionMatrix: Returns the normal approximation of half of the binomial confidence interval for this confusion matrix for the specified z-score.
confidence95() - Method in class com.aliasi.classify.ConfusionMatrix: Returns half the width of the 95% confidence interval for this confusion matrix.
confidence99() - Method in class com.aliasi.classify.ConfusionMatrix: Returns half the width of the 99% confidence interval for this confusion matrix.
ConfidenceChunker - Interface in com.aliasi.chunk: The ConfidenceChunker interface specifies a method for returning an iterator over chunks in order of confidence.
confidenceEvaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator: Returns the scored precision-recall evaluation derived from a confidence-based chunker.
confusionMatrix() - Method in class com.aliasi.classify.BaseClassifierEvaluator: Returns the confusion matrix of first-best classification result statistics for this evaluator.
ConfusionMatrix - Class in com.aliasi.classify: An instance of ConfusionMatrix represents a quantitative comparison between two classifiers over a fixed set of categories on a number of test cases.
ConfusionMatrix(String[]) - Constructor for class com.aliasi.classify.ConfusionMatrix: Construct a confusion matrix with all zero values from the specified array of categories.
ConfusionMatrix(String[], int[][]) - Constructor for class com.aliasi.classify.ConfusionMatrix: Construct a confusion matrix with the specified set of categories and values.
confusionMatrix() - Method in class com.aliasi.spell.SpellEvaluator: Returns the confusion matrix for the current state of this evaluation.
consistentTokens(String[], String[], TokenizerFactory) - Static method in class com.aliasi.chunk.CharLmHmmChunker
constant(double) - Static method in class com.aliasi.stats.AnnealingSchedule: Return the annealing schedule for the specified constant learning rate.
contains(E) - Method in class com.aliasi.cluster.Dendrogram: Returns true if this dendrogram contains the specified object as a leaf.
contains(Object) - Method in class com.aliasi.util.CompactHashSet: Returns true if this set contains the specified object.
containsChar(String, char) - Static method in class com.aliasi.util.Strings: Returns true if the specified string contains an instance of the specified character.
containsDigits(char[]) - Static method in class com.aliasi.util.Strings: Returns true if at least one of the characters in the specified array is a digit.
containsKey(Object) - Method in class com.aliasi.util.BinaryMap: Returns true if this mapping contains a mapping for the specified object.
containsLetter(char[]) - Static method in class com.aliasi.util.Strings: Returns true if at least one of the characters in the specified array is a letter.
containsValue(Object) - Method in class com.aliasi.util.BinaryMap: Returns true if this map contains a mapping from some key to the specified value.
CONTENT - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the content attribute.
COORDS - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the coords attribute.
copheneticCorrelation(Distance<? super E>) - Method in class com.aliasi.cluster.Dendrogram: Returns the Pearson correlation coefficient between the inter-object distances and the cophenetic distances defined by this dendrogram.
copy(TrieReader, TrieWriter) - Static method in class com.aliasi.lm.BitTrieWriter: Copies the content of the specified trie reader to the specified trie writer.
copy(char[]) - Static method in class com.aliasi.util.Arrays: Return a shallow copy of the specified array that contains the same elements as the specified array.
copy(Reader, Writer) - Static method in class com.aliasi.util.Streams: Copies the content of the reader into the writer.
copy(InputStream, OutputStream) - Static method in class com.aliasi.util.Streams: Copies the content of the input stream into the output stream.
copyFile(File, File) - Static method in class com.aliasi.util.Files: Copies the contents of one file into another.
Corpus<H extends Handler> - Class in com.aliasi.corpus: The Corpus abstract class provides a basis for passing training and testing data to data handlers.
Corpus() - Constructor for class com.aliasi.corpus.Corpus: Construct a corpus.
corpusLog2JointProbability() - Method in class com.aliasi.classify.JointClassifierEvaluator: Returns the joint log (base 2) probability of the entire evaluation corpus.
corpusLog2Probability() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample: Returns an estimate of the log (base 2) likelihood of the corpus given the point estimates of topic and document multinomials determined from this sample.
correctResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the number of cases where the response is correct.
correlation(double[], double[]) - Static method in class com.aliasi.stats.Statistics: Returns (Pearson's) correlation coefficient between two specified arrays.
cosine(Vector) - Method in class com.aliasi.matrix.AbstractVector: Returns the cosine of this vector and the specified vector.
cosine(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
cosine(Vector) - Method in interface com.aliasi.matrix.Vector: Returns the cosine product of this vector with the specified vector.
CosineDistance - Class in com.aliasi.matrix: The CosineDistance class implements proximity as vector cosine.
CosineDistance() - Constructor for class com.aliasi.matrix.CosineDistance: Construct a cosine proximity.
count(int, int) - Method in class com.aliasi.classify.ConfusionMatrix: Returns the value of the cell in the matrix for the specified reference and response category indices.
count() - Method in class com.aliasi.dict.DictionaryEntry: Returns the count for this dictionary entry.
count(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter: Returns the count for the specified character sequence.
count(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
count(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter: Returns the count of the specified sequence of integers.
count(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
count(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter: Returns the count in the training corpus for the specified sequence of characters.
count(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
countComparator() - Method in class com.aliasi.util.ObjectToCounterMap: Returns a CountComparator that compares objects based on their counts in this object to counter map.
Counter - Class in com.aliasi.util: A reassignable integer usable for counting.
Counter() - Constructor for class com.aliasi.util.Counter: Create a counter with initial count 0.
Counter(int) - Constructor for class com.aliasi.util.Counter: Create a counter with the specified count value.
cramersV() - Method in class com.aliasi.classify.ConfusionMatrix: Returns the value of Cramér's V statistic for this matrix.
create(String[], double[]) - Static method in class com.aliasi.classify.JointClassification: Return a joint classification given the categories and log probabilities.
create(ScoredObject<String>[]) - Static method in class com.aliasi.classify.ScoredClassification: Deprecated. Use ScoredClassification.create(List) instead.
create(List<ScoredObject<String>>) - Static method in class com.aliasi.classify.ScoredClassification: Factory method which returns a scored classification from the list of scored categories.
create(String, String) - Method in class com.aliasi.coref.AbstractMentionFactory: Return a mention based on the specified phrase and entity type.
create(String, String) - Method in interface com.aliasi.coref.MentionFactory: Return a mention based on the specified phrase and entity type.
create() - Method in interface com.aliasi.util.Factory: Return an instance created by this factory.
create() - Static method in class com.aliasi.util.SmallSet: Return an empty small set.
create(F) - Static method in class com.aliasi.util.SmallSet: Return a singleton empty set containing the specified member.
create(F, F) - Static method in class com.aliasi.util.SmallSet: Return a set containing the two specified members.
create(F[]) - Static method in class com.aliasi.util.SmallSet: Return a set consisting of members drawn from the specified array of members.
create(Set<? extends F>) - Static method in class com.aliasi.util.SmallSet: Return a small set containing the members specified in the set argument.
create(F, Set<? extends F>) - Static method in class com.aliasi.util.SmallSet: Return a small set containing the member and set of members specified in the arguments.
create(Set<? extends F>, Set<? extends F>) - Static method in class com.aliasi.util.SmallSet: Return a small set containing all of the members of both specified sets.
create() - Static method in class com.aliasi.util.Tuple: Returns a zero-length tuple.
create(E) - Static method in class com.aliasi.util.Tuple: Returns a tuple of length one containing the specified object.
create(E[]) - Static method in class com.aliasi.util.Tuple: Creates a tuple from the specified array of objects.
create(E, E) - Static method in class com.aliasi.util.Tuple: Returns a new tuple representing a pair of objects.
createAttributes(String, String) - Static method in class com.aliasi.xml.SimpleElementHandler: Create an attributes list with the specified attribute and value.
createAttributes(String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler: Create an attributes list with the specified pair of attributes.
createAttributes(String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler: Create an attributes list with the specified tripe of attributes and values.
createAttributes(String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler: Create an attributes list with the specified four attributes and values.
createAttributes(String, String, String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler: Create an attributes list with the specified five attributes and values.
createAttributes(String, String, String, String, String, String, String, String, String, String, String, String) - Static method in class com.aliasi.xml.SimpleElementHandler: Create an attributes list with the specified six attributes and values.
createChunk(int, int) - Static method in class com.aliasi.chunk.ChunkFactory: Return a chunk with the specified start and end positions, with default type and score.
createChunk(int, int, String) - Static method in class com.aliasi.chunk.ChunkFactory: Return a chunk with the specified start and end positions, specified type and default score.
createChunk(int, int, double) - Static method in class com.aliasi.chunk.ChunkFactory: Return a chunk with the specified start and end positions, specified score and default type.
createChunk(int, int, String, double) - Static method in class com.aliasi.chunk.ChunkFactory: Return a chunk with the specified start and end positions, type and score.
createLogProbs(String[], double[]) - Static method in class com.aliasi.classify.ConditionalClassification: Return a conditional classification given the categories and log probabilities.
createNGramBoundary(String[], int) - Static method in class com.aliasi.classify.DynamicLMClassifier: Construct a dynamic classifier over the specified cateogries, using boundary character n-gram models of the specified order.
createNGramProcess(String[], int) - Static method in class com.aliasi.classify.DynamicLMClassifier: Construct a dynamic classifier over the specified categories, using process character n-gram models of the specified order.
createProbs(String[], double[]) - Static method in class com.aliasi.classify.ConditionalClassification: Static factory method for conditional classifications based on the specified categories and linear probability ratios.
createTokenized(String[], TokenizerFactory, int) - Static method in class com.aliasi.classify.DynamicLMClassifier: Construct a dynamic language model classifier over the specified categories using token n-gram language models of the specified order and the specified tokenizer factory for tokenization.
crf() - Method in class com.aliasi.crf.ChainCrfChunker: Returns the underlying CRF for this chunker.
crossEntropy() - Method in class com.aliasi.classify.ConfusionMatrix: The cross-entropy of the response distribution against the reference distribution.
cumulativeProbability(long, long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution: Returns the cumulative probability of all outcomes between the specified bounds, inclusive.
cumulativeProbability(long, long) - Method in interface com.aliasi.stats.DiscreteDistribution: Returns the probability that an outcome will fall in the range between the specified lower and upper bounds inclusive.
cumulativeProbabilityGreater(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution: Returns the cumulative probability of all outcomes greater than or equal to the specified lower bound.
cumulativeProbabilityGreater(long) - Method in interface com.aliasi.stats.DiscreteDistribution: Returns the probability an outcome will be greater than or equal to the specified outcome.
cumulativeProbabilityLess(long) - Method in class com.aliasi.stats.AbstractDiscreteDistribution: Returns the cumulative probability of all outcomes less than or equal to the specified upper bound.
cumulativeProbabilityLess(long) - Method in interface com.aliasi.stats.DiscreteDistribution: Returns the probability an outcome will be less than or equal to the specified outcome.
currentAttributes() - Method in class com.aliasi.xml.ElementStackFilter: Returns the attributes as specified for the current containing element.
currentElement() - Method in class com.aliasi.xml.ElementStackFilter: Returns the qualified name of the current containing element's qualified name.

D

DATA - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the data attribute.
DATETIME - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the datetime attribute.
DD - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element dd.
dd() - Method in class com.aliasi.xml.XHtmlWriter: Start an dd element with no attributes.
dd(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an dd element with the specified attributes.
dd(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dd element with the specified attribute and value.
dd(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dd element with the specified attributes and values.
dd(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dd element with the specified attributes and values.
dd(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dd element with the specified attributes and values.
deAccentLatin1(char) - Static method in class com.aliasi.util.Strings: Returns the equivalent de-accented character for characters in the Latin-1 (ISO-8859-1) range (0000-00FF).
deAccentLatin1(CharSequence) - Static method in class com.aliasi.util.Strings: Returns the string constructed from the specified character sequence by deaccenting each of its characters.
debug(String) - Method in class com.aliasi.io.Reporter: Utility method for debug-level reports.
DECLARE - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the declare attribute.
decrementSubstrings(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter: Decrements all of the substrings of the specified character slice by one.
decrementUnigram(char) - Method in class com.aliasi.lm.TrieCharSeqCounter: Decrements the unigram count for the specified character.
decrementUnigram(char, int) - Method in class com.aliasi.lm.TrieCharSeqCounter: Decrements the unigram count by the specified amount for the specified character.
DEFAULT_ACCEPT_CATEGORY - Static variable in class com.aliasi.classify.BinaryLMClassifier: The default value of the category for accepting input, "true".
DEFAULT_CHUNK_SCORE - Static variable in class com.aliasi.chunk.ChunkFactory: The default chunk score, Double.NEGATIVE_INFINITY.
DEFAULT_CHUNK_TYPE - Static variable in class com.aliasi.chunk.ChunkFactory: The default chunk type, "CHUNK".
DEFAULT_DOCUMENT_BOUNDARY_TOKEN - Static variable in class com.aliasi.suffixarray.TokenSuffixArray: The default boundary token for documents.
DEFAULT_REJECT_CATEGORY - Static variable in class com.aliasi.classify.BinaryLMClassifier: The default value of the category for rejecting input, "false".
DEFAULT_SEPARATOR_CHAR - Static variable in class com.aliasi.util.Strings: The default separator character, a single space.
DEFAULT_SEPARATOR_STRING - Static variable in class com.aliasi.util.Strings: The default separator string.
DEFAULT_TEST_DIR_NAME - Static variable in class com.aliasi.corpus.DiskCorpus: The name of the default testing directory, "test".
DEFAULT_TRAIN_DIR_NAME - Static variable in class com.aliasi.corpus.DiskCorpus: The name of the default training directory, "train".
DEFER - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the defer attribute.
DEL - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element del.
del() - Method in class com.aliasi.xml.XHtmlWriter: Start an del element with no attributes.
del(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an del element with the specified attributes.
del(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an del element with the specified attribute and value.
del(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an del element with the specified attributes and values.
del(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an del element with the specified attributes and values.
del(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an del element with the specified attributes and values.
DelegateHandler - Class in com.aliasi.xml: A DelegateHandler may be used with a delegating handler to more efficiently implement nested embeddings.
DelegateHandler(DelegatingHandler) - Constructor for class com.aliasi.xml.DelegateHandler: Construct a delegate handler that coordinates recursive delegation with the specified delegating handler.
DelegatingHandler - Class in com.aliasi.xml: A DelegatingHandler is a SAX filter that routes events to embedded handlers based on their element embedding.
DelegatingHandler(int) - Constructor for class com.aliasi.xml.DelegatingHandler: Construct a delegating handler with up to the specified maximum delegation depth.
DelegatingHandler() - Constructor for class com.aliasi.xml.DelegatingHandler: Construct a delegating handler with delegation depth 512.
deleteCost(String) - Method in class com.aliasi.coref.matchers.SequenceSubstringMatch: Returns the cost to delete the specified token.
deleteWeight(char) - Method in class com.aliasi.spell.FixedWeightEditDistance: Returns the constant weight of deleting the specified character.
deleteWeight(char) - Method in class com.aliasi.spell.WeightedEditDistance: Returns the weight of deleting the specified character.
Dendrogram<E> - Class in com.aliasi.cluster: A Dendrogram represents the result of a weighted hierarchical clustering of a set of objects.
dendrogram1() - Method in class com.aliasi.cluster.LinkDendrogram: Returns the first dendrogram in the linked dendrogram.
dendrogram2() - Method in class com.aliasi.cluster.LinkDendrogram: Returns the second dendrogram in the linked dendrogram.
DenseMatrix - Class in com.aliasi.matrix: A DenseMatrix is a matrix implementation suitable for matrices with primarily non-zero values.
DenseMatrix(int, int) - Constructor for class com.aliasi.matrix.DenseMatrix: Construct a dense matrix with the specified positive number of rows and columns.
DenseMatrix(double[][]) - Constructor for class com.aliasi.matrix.DenseMatrix: Construct a dense matrix with the specified values.
DenseVector - Class in com.aliasi.matrix: A DenseVector is a vector implementation suitable for vectors with primarily non-zero values.
DenseVector(int) - Constructor for class com.aliasi.matrix.DenseVector: Construct a dense vector with the specified number of dimensions.
DenseVector(double[]) - Constructor for class com.aliasi.matrix.DenseVector: Construct a dense vector with the specified values.
DenseVector(DenseVector) - Constructor for class com.aliasi.matrix.DenseVector: Constructs a deep copy of the specified vector.
DenseVector(Vector) - Constructor for class com.aliasi.matrix.DenseVector: Cosntruct a deep copy of the specified vector as a dense vector.
dereference() - Method in class com.aliasi.cluster.Dendrogram: Returns the top-level cluster of which this dendrogram is a member.
DFN - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element dfn.
dfn() - Method in class com.aliasi.xml.XHtmlWriter: Start an dfn element with no attributes.
dfn(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an dfn element with the specified attributes.
dfn(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dfn element with the specified attribute and value.
dfn(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dfn element with the specified attributes and values.
dfn(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dfn element with the specified attributes and values.
dfn(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dfn element with the specified attributes and values.
dictionary() - Method in class com.aliasi.dict.ApproxDictionaryChunker: Returns the trie dictionary underlying this chunker.
Dictionary<C> - Interface in com.aliasi.dict: The Dictionary interface represents a dictionary as a set of entries.
DictionaryEntry<C> - Class in com.aliasi.dict: A DictionaryEntry provides a phrase as a string, an object-based category for the phrase, and a double-valued score.
DictionaryEntry(String, C, int, double) - Constructor for class com.aliasi.dict.DictionaryEntry: Construct a dictionary entry with the specified phrase, category, count and score.
DictionaryEntry(String, C, double) - Constructor for class com.aliasi.dict.DictionaryEntry: Construct a dictionary entry with the specified phrase, category and score, with a count of zero.
DictionaryEntry(String, C, int) - Constructor for class com.aliasi.dict.DictionaryEntry: Construct a dictionary entry with the specified phrase, category and count, with the score set to the count value.
DictionaryEntry(String, C) - Constructor for class com.aliasi.dict.DictionaryEntry: Construct a dictionary entry with the specified phrase and category, with count and score set to 1.
didYouMean(String) - Method in class com.aliasi.spell.CompiledSpellChecker: Returns a first-best hypothesis of the intended message given a received message.
didYouMean(String) - Method in interface com.aliasi.spell.SpellChecker: Returns a first-best hypothesis of the intended message given the received message.
didYouMeanNBest(String) - Method in class com.aliasi.spell.CompiledSpellChecker: Returns an iterator over the n-best spelling corrections for the specified input string.
digamma(double) - Static method in class com.aliasi.util.Math: Returns the value of the digamma function for the specified value.
DIGIT_CAT - Static variable in class com.aliasi.tokenizer.CharacterTokenCategorizer: The digit category.
DIR - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element dir.
dir() - Method in class com.aliasi.xml.XHtmlWriter: Start an dir element with no attributes.
dir(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an dir element with the specified attributes.
dir(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dir element with the specified attribute and value.
dir(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dir element with the specified attributes and values.
dir(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dir element with the specified attributes and values.
dir(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dir element with the specified attributes and values.
DIR_ATT - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the dir attribute.
dirichletLog2Prob(double, double[]) - Static method in class com.aliasi.stats.Statistics: Returns the log (base 2) of the probability of the specified discrete distribution given the specified uniform Dirichlet with concentration parameters equal to the specified value.
dirichletLog2Prob(double[], double[]) - Static method in class com.aliasi.stats.Statistics: Returns the log (base 2) of the probability of the specified discrete distribution given the specified Dirichlet distribution concentration parameters.
DISABLED - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the disabled attribute.
DiscreteChooser - Class in com.aliasi.dca: The DiscreteChooser class implements multinomial conditional logit discrete choice analysis with variables varying over alternatives.
DiscreteChooser(Vector) - Constructor for class com.aliasi.dca.DiscreteChooser: Construct a discrete chooser with the specified coefficient vector.
DiscreteDistribution - Interface in com.aliasi.stats: A DiscreteDistribution provides a probability distribution over long integer outcomes.
DiscreteObjectChooser<E> - Class in com.aliasi.dca: A DiscreteObjectChooser provides an implementation of discrete choice analysis (DCA) over arbitrary objects using a feature extractor.
DiscreteObjectChooser(FeatureExtractor<E>, SymbolTable, DiscreteChooser) - Constructor for class com.aliasi.dca.DiscreteObjectChooser: Construct a discrete chooser based on the specified feature extractor, feature symbol table, and base chooser.
DiskCorpus<H extends Handler> - Class in com.aliasi.corpus: A DiskCorpus reads data from a specified training and test directory using a specified parser.
DiskCorpus(Parser<H>, File) - Constructor for class com.aliasi.corpus.DiskCorpus: Construct a corpus from the specified parser and data directory.
DiskCorpus(Parser<H>, File, File) - Constructor for class com.aliasi.corpus.DiskCorpus: Construct a corpus from the specified parser and training and test directories.
distance() - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer: Returns the distance function for this hierarchical clusterer.
DISTANCE - Static variable in class com.aliasi.matrix.CosineDistance: A constant for the cosine distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.CosineDistance: Returns one minus the proximity of the vectors.
DISTANCE - Static variable in class com.aliasi.matrix.EuclideanDistance: The Euclidean distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.EuclideanDistance: Returns the Euclidean distance between the specified pair of vectors.
distance(Vector, Vector) - Method in class com.aliasi.matrix.MinkowskiDistance: Returns the Minkowski distance between the specified pair of vectors.
DISTANCE - Static variable in class com.aliasi.matrix.TaxicabDistance: The taxicab distance.
distance(Vector, Vector) - Method in class com.aliasi.matrix.TaxicabDistance: Returns the taxicab distance between the specified pair of vectors.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.EditDistance: Returns the edit distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaccardDistance: Returns the Jaccard distance between the specified character sequence.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.JaroWinklerDistance: Returns the Jaro-Winkler distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.TfIdfDistance: Return the TF/IDF distance between the specified character sequences.
distance(CharSequence, CharSequence) - Method in class com.aliasi.spell.WeightedEditDistance: Returns the weighted edit distance between the specified character sequences.
Distance<E> - Interface in com.aliasi.util: The Distance interface provides a general method for defining distances between two objects.
distance(E, E) - Method in interface com.aliasi.util.Distance: Returns the distance between the specified pair of objects.
distanceThreshold() - Method in class com.aliasi.dict.ApproxDictionaryChunker: Returns the maximum edit distance a string can be from a dictionary entry in order to be returned by this chunker.
DIV - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element div.
div() - Method in class com.aliasi.xml.XHtmlWriter: Start an div element with no attributes.
div(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an div element with the specified attributes.
div(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an div element with the specified attribute and value.
div(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an div element with the specified attributes and values.
div(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an div element with the specified attributes and values.
div(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an div element with the specified attributes and values.
DL - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element dl.
dl() - Method in class com.aliasi.xml.XHtmlWriter: Start an dl element with no attributes.
dl(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an dl element with the specified attributes.
dl(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dl element with the specified attribute and value.
dl(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dl element with the specified attributes and values.
dl(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dl element with the specified attributes and values.
dl(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dl element with the specified attributes and values.
docEndToken(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray: Returns the index of the next token past the last token of the specified document.
docFrequency(String) - Method in class com.aliasi.spell.TfIdfDistance: Returns the number of training documents that contained the specified term.
docStartToken(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray: Returns the starting token position in the underlying token suffix array of the document with the specified identifier in the overall set of documents.
documentBoundaryToken() - Method in class com.aliasi.suffixarray.TokenSuffixArray: Returns the token used to separate documents in this suffix array.
documentLength(int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample: Returns the length of the specified document in tokens.
documentNames() - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray: Returns an unmodifiable view of the set of document names in the collection.
documentText(String) - Method in class com.aliasi.suffixarray.DocumentTokenSuffixArray: Return the text of the document with the specified name.
DocumentTokenSuffixArray - Class in com.aliasi.suffixarray: A DocumentTokenSuffixArray implements a suffix array over a collection of named documents.
DocumentTokenSuffixArray(Map<String, String>, TokenizerFactory, int, String) - Constructor for class com.aliasi.suffixarray.DocumentTokenSuffixArray: Construct a suffix array from the specified identified document collection using the specified tokenizer factory, limiting comparisons to the specified maximum suffix length and separating documents with the specified boundary token.
documentTopicCount(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample: Returns the number of times the specified topic was assigned to the specified document in this sample.
documentTopicPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation: Returns the concentration value of the uniform Dirichlet prior over topic distributions for documents.
documentTopicPrior() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample: Returns the uniform Dirichlet concentration hyperparameter α for document distributions over topics from which this sample was produced.
documentTopicProb(int, int) - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample: Returns the estimate of the probability of the topic being assigned to a word in the specified document given the topic * assignments in this sample.
doNotEditTokens() - Method in class com.aliasi.spell.CompiledSpellChecker: Returns an unmodifiable view of the set of tokens that will never be edited in this compiled spell checker.
dotProduct(Vector) - Method in class com.aliasi.matrix.AbstractVector: Returns the dot product (inner product) of this vector with the specified vector.
dotProduct(Vector) - Method in class com.aliasi.matrix.DenseVector
dotProduct(Vector) - Method in class com.aliasi.matrix.SparseFloatVector
dotProduct(Vector) - Method in interface com.aliasi.matrix.Vector: Returns the dot product of this vector with the specified vector.
DotProductKernel - Class in com.aliasi.matrix: The DotProductKernel is the trivial kernel function computed by taking the dot product of the input vectors.
DotProductKernel() - Constructor for class com.aliasi.matrix.DotProductKernel: Construct a dot-product kernel.
doubleValue() - Method in class com.aliasi.util.Counter: Returns the value of this counter as a double.
DT - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element dt.
dt() - Method in class com.aliasi.xml.XHtmlWriter: Start an dt element with no attributes.
dt(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an dt element with the specified attributes.
dt(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dt element with the specified attribute and value.
dt(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dt element with the specified attributes and values.
dt(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dt element with the specified attributes and values.
dt(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an dt element with the specified attributes and values.
DynamicLMClassifier<L extends LanguageModel.Dynamic> - Class in com.aliasi.classify: A DynamicLMClassifier is a language model classifier that accepts training events of categorized character sequences.
DynamicLMClassifier(String[], L[]) - Constructor for class com.aliasi.classify.DynamicLMClassifier: Construct a dynamic language model classifier over the specified categories with specified language models per category and an overall category estimator.

E

edgeFeatures(int, int) - Method in class com.aliasi.crf.ChainCrfFeatures: Return the edge features for the specified input position and index of the previous tag.
editDistance() - Method in class com.aliasi.dict.ApproxDictionaryChunker: Returns the weighted edit distance for matching with this chunker.
editDistance() - Method in class com.aliasi.spell.AutoCompleter: Returns the weighted edit distance for this auto-completer.
editDistance() - Method in class com.aliasi.spell.CompiledSpellChecker: Returns the weighted edit distance for this compiled spell checker.
EditDistance - Class in com.aliasi.spell: The EditDistance class implements the standard notion of edit distance, with or without transposition.
EditDistance(boolean) - Constructor for class com.aliasi.spell.EditDistance: Construct an edit distance with or without transposition based on the specified flag.
editDistance(CharSequence, CharSequence, boolean) - Static method in class com.aliasi.spell.EditDistance: Returns the edit distance between the character sequences with or without transpositions as specified.
editDistance() - Method in class com.aliasi.spell.TrainSpellChecker: Returns the weighted edit distance (channel model) underlying this spell checker trainer.
elapsedTimeMillis() - Method in class com.aliasi.util.AbstractCommand: Return the elapsed time since the construction of this command in milliseconds.
elasticNet(double, double, boolean) - Static method in class com.aliasi.stats.RegressionPrior: Returns the elastic net prior with the specified weight on the Laplace prior, the specified scale parameter for the elastic net and a noninformative prior on the intercept (dimension 0) if the specified flag is set.
element() - Method in class com.aliasi.util.BoundedPriorityQueue: Returns the highest scoring object in this priority queue, throwing an exception if the queue is empty.
element() - Method in class com.aliasi.util.ShortPriorityQueue: Returns the largest element in this queue according to the comparator, throwing an exception if the queue is empty.
ElementStackFilter - Class in com.aliasi.xml: Provides a SAX filter that maintains a stack of elements visited.
ElementStackFilter(DefaultHandler) - Constructor for class com.aliasi.xml.ElementStackFilter: Construct an element stack filter that delegates events to the specified handler.
ElementStackFilter() - Constructor for class com.aliasi.xml.ElementStackFilter: Construct an element stack filter without a specified handler to which to delegate events.
elevenPtInterpPrecision() - Method in class com.aliasi.classify.ScoredPrecisionRecallEvaluation: Returns the interpolated precision at eleven recall points evenly spaced between 0 and 1.
EM - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element em.
em() - Method in class com.aliasi.xml.XHtmlWriter: Start an em element with no attributes.
em(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an em element with the specified attributes.
em(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an em element with the specified attribute and value.
em(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an em element with the specified attributes and values.
em(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an em element with the specified attributes and values.
em(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an em element with the specified attributes and values.
emissionCache() - Method in class com.aliasi.hmm.HmmDecoder: Returns the mapping used to cache emission probabilities, or null if not caching.
emissionLm(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator: Returns the language model used for emission probabilities for the specified state.
emissionLog2Cache() - Method in class com.aliasi.hmm.HmmDecoder: Returns the mapping used to cache log (base 2) emission probabilities, or null if not caching.
emIterator(TradNaiveBayesClassifier, Factory<TradNaiveBayesClassifier>, Corpus<ObjectHandler<Classified<CharSequence>>>, Corpus<ObjectHandler<CharSequence>>, double) - Static method in class com.aliasi.classify.TradNaiveBayesClassifier: Apply the expectation maximization (EM) algorithm to train a traditional naive Bayes classifier using the specified labeled and unabled data, initial classifier and factory for creating subsequent factories.
emitLog2Prob(int, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm: Return the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm: Returns the log (base 2) of the emission estimate.
emitLog2Prob(int, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel: Return the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel: Returns the log (base 2) of the emission estimate.
emitLog2Prob(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator
emitProb(String, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm: Returns an estimate the emission of the specified string by the state with the specified label.
emitProb(int, CharSequence) - Method in class com.aliasi.hmm.AbstractHmm: Return an estimate of the likelihood of the state with the specified identifier to emit the specified string.
emitProb(int, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel: Return an estimate of the likelihood of the state with the specified identifier to emit the specified string.
emitProb(String, CharSequence) - Method in interface com.aliasi.hmm.HiddenMarkovModel: Returns an estimate the emission of the specified string by the state with the specified label.
emitProb(String, CharSequence) - Method in class com.aliasi.hmm.HmmCharLmEstimator: Returns the estimate of the probability of the specified string being emitted from the specified state.
empty() - Static method in class com.aliasi.util.Iterators: Returns an iterator that has no elements.
EMPTY_ATTS - Static variable in class com.aliasi.xml.SimpleElementHandler: An implementation of Attributes with no attributes.
EMPTY_CHAR_ARRAY - Static variable in class com.aliasi.util.Strings: The zero-length character array.
EMPTY_INT_ARRAY - Static variable in class com.aliasi.util.Arrays: A length 0 array of integers.
EMPTY_STRING - Static variable in class com.aliasi.util.Strings: The empty string.
EMPTY_STRING_2D_ARRAY - Static variable in class com.aliasi.util.Strings: The zero-length two-dimensional array of strings.
EMPTY_STRING_ARRAY - Static variable in class com.aliasi.util.Strings: The zero-length string array.
emTrain(TradNaiveBayesClassifier, Factory<TradNaiveBayesClassifier>, Corpus<ObjectHandler<Classified<CharSequence>>>, Corpus<ObjectHandler<CharSequence>>, double, int, double, Reporter) - Static method in class com.aliasi.classify.TradNaiveBayesClassifier: Apply the expectation maximization (EM) algorithm to train a traditional naive Bayes classifier using the specified labeled and unabled data, initial classifier and factory for creating subsequent factories, maximum number of epochs, minimum improvement per epoch, and reporter to which progress reports are sent.
ENCTYPE - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the enctype attribute.
end() - Method in interface com.aliasi.chunk.Chunk: Returns the index of one past the last character in this chunk.
endBoundaryEvaluation() - Method in class com.aliasi.sentences.SentenceEvaluation: Returns a precision/recall evaluation based on the end boundaries in the reference and response cases.
endDocument() - Method in class com.aliasi.xml.GroupCharactersFilter: End the document, delegating the call to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) on any accumulated characters.
endDocument() - Method in class com.aliasi.xml.SAXFilterHandler: Call delegated to SAXFilterHandler.mHandler.
endDocument() - Method in class com.aliasi.xml.SAXWriter: Flushes the underlying character writers output to the output stream, trapping all exceptions.
endElement(String, String, String) - Method in class com.aliasi.xml.DelegatingHandler: Call is delegated to the delegate and may trigger a finish delegate callback.
endElement(String, String, String) - Method in class com.aliasi.xml.ElementStackFilter: End the specified element, popping its qualified name and attributes off the stack, and delegating the SAX event to the contained handler.
endElement(String, String, String) - Method in class com.aliasi.xml.GroupCharactersFilter: Ends the specified element, delegating the SAX event to the contained handler, after calling GroupCharactersFilter.characters(char[],int,int) to handle any accumulated characters.
endElement(String, String, String) - Method in class com.aliasi.xml.RemoveElementsFilter: Removes specified elements, passing others to the contained handler.
endElement(String, String, String) - Method in class com.aliasi.xml.SAXFilterHandler: Call delegated to SAXFilterHandler.mHandler.
endElement(String, String, String) - Method in class com.aliasi.xml.SAXWriter: Prints the end element, using the qualified name.
endLog2Prob(String) - Method in class com.aliasi.hmm.AbstractHmm: Returns the log (base 2) of the end probability for the specified state.
endLog2Prob(int) - Method in class com.aliasi.hmm.AbstractHmm: Returns the log (base 2) of the end probability for the state with the specified identifier.
endLog2Prob(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel: Returns the log (base 2) of the end probability for the state with the specified identifier.
endLog2Prob(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel: Returns the log (base 2) of the end probability for the specified state.
endOfStream() - Method in class com.aliasi.io.BitInput: Returns true if all of the available bits have been read or if this stream has been closed.
endPrefixMapping(String) - Method in class com.aliasi.xml.DelegatingHandler: Call delegated.
endPrefixMapping(String) - Method in class com.aliasi.xml.SAXFilterHandler: Call delegated to SAXFilterHandler.mHandler.
endProb(String) - Method in class com.aliasi.hmm.AbstractHmm: Returns the end probability for the specified state.
endProb(int) - Method in class com.aliasi.hmm.AbstractHmm: Returns the end probability for the state with the specified identifier.
endProb(int) - Method in interface com.aliasi.hmm.HiddenMarkovModel: Returns the end probability for the state with the specified identifier.
endProb(String) - Method in interface com.aliasi.hmm.HiddenMarkovModel: Returns the end probability for the specified state.
endProb(String) - Method in class com.aliasi.hmm.HmmCharLmEstimator
endSimpleElement(String) - Method in class com.aliasi.xml.SimpleElementHandler: End an element with a null namespace, using the local name for both local and qualified names.
endSimpleElement(DefaultHandler, String) - Static method in class com.aliasi.xml.SimpleElementHandler: End an element for the specified handler with a null namespace, using the local name for both local and qualified names.
enforceConsistency() - Method in class com.aliasi.chunk.BioTagChunkCodec: Returns true if this codec enforces consistency of the chunkings relative to the tokenizer factory.
EnglishMentionFactory - Class in com.aliasi.coref: A mention factory for English phrases.
EnglishMentionFactory() - Constructor for class com.aliasi.coref.EnglishMentionFactory: Constructs a new English mention factory.
EnglishStopTokenizerFactory - Class in com.aliasi.tokenizer: An EnglishStopTokenizerFactory applies an English stop list to a contained base tokenizer factory.
EnglishStopTokenizerFactory(TokenizerFactory) - Constructor for class com.aliasi.tokenizer.EnglishStopTokenizerFactory: Construct an English stop tokenizer factory with the specified base factory.
entityToCharacter(String) - Static method in class com.aliasi.util.Sgml: Returns the character represented by the specified SGML entity, or null if the entity is undefined.
entityType() - Method in class com.aliasi.coref.AbstractMentionChain: Returns the entity type associated with this mention chain.
entityType() - Method in class com.aliasi.coref.CachedMention: Returns the type of entity recognized for this mention.
entityType() - Method in interface com.aliasi.coref.Mention: Returns the type of entity recognized for this mention.
entityType() - Method in interface com.aliasi.coref.MentionChain: Returns the entity type associated with this mention chain.
EntityTypeMatch - Class in com.aliasi.coref.matchers: Implements a matching function that returns the score specified in the constructor if the mention has the specified entity type.
EntityTypeMatch(int, String) - Constructor for class com.aliasi.coref.matchers.EntityTypeMatch: Construct an instance of an entity type matcher that returns the specified score for a match against a mention of the specified type.
entropy() - Method in class com.aliasi.stats.AbstractDiscreteDistribution: Returns the entropy of this distribution in bits (log 2).
entropy() - Method in interface com.aliasi.stats.DiscreteDistribution: Returns the entropy of this distribution.
entryList() - Method in class com.aliasi.dict.AbstractDictionary: Returns all of the dictionary entries for this dictionary.
entryList() - Method in interface com.aliasi.dict.Dictionary: Returns all of the dictionary entries for this dictionary.
entrySet() - Method in class com.aliasi.util.BinaryMap: Return a set view of the mappings in this map.
entrySet() - Method in class com.aliasi.util.FastCache: Returns a snapshot of the entries in this map.
entrySet() - Method in class com.aliasi.util.HardFastCache: Returns a snapshot of the entries in this map.
epoch() - Method in class com.aliasi.cluster.LatentDirichletAllocation.GibbsSample: Returns the epoch in which this sample was generated.
equal(Chunking, Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl: Returns true if the specified chunkings are equal.
equalCharSequence(CharSequence, CharSequence) - Static method in class com.aliasi.util.Strings: Return true if the two character sequences have the same length and the same characters.
equals(Object) - Method in interface com.aliasi.chunk.Chunk: Returns true if the specified object is a chunk that is equal to this chunk.
equals(Object) - Method in class com.aliasi.chunk.ChunkAndCharSeq: Returns true if the specified object is a chunk and character sequence structurally equivalent to this one.
equals(Object) - Method in interface com.aliasi.chunk.Chunking: Returns true if the specified object is a chunking equal to this one.
equals(Object) - Method in class com.aliasi.chunk.ChunkingImpl
equals(Object) - Method in class com.aliasi.coref.AbstractMentionChain: Returns true if the specified object is a mention chain that is equal to this mention chain.
equals(MentionChain) - Method in class com.aliasi.coref.AbstractMentionChain: Returns true if the specified mention chain is equal to this mention chain.
equals(Object) - Method in class com.aliasi.dict.DictionaryEntry: Returns true if the specified object is a dictionary object equal to this one.
equals(Object) - Method in class com.aliasi.matrix.AbstractMatrix: Return true if the specified object is a matrix of the same dimensionality with the same values.
equals(Object) - Method in class com.aliasi.matrix.AbstractVector: Returns true if the specified object is a vector with the same dimensionality and values as this vector.
equals(Object) - Method in interface com.aliasi.matrix.Matrix: Returns true if the specified object is a matrix with the same number of rows and columns and the same value in every cell as this matrix.
equals(Object) - Method in class com.aliasi.matrix.SparseFloatVector: Returns true if the specified object is a vector with the same dimensionality and values as this vector.
equals(Object) - Method in interface com.aliasi.matrix.Vector: Returns true if the specified object is a vector that has the same dimensionality and values as this vector.
equals(Object) - Method in class com.aliasi.tag.StringTagging: Returns true if the specified object is a string tagging that's structurally identical to this tagging.
equals(Object) - Method in class com.aliasi.tokenizer.Tokenization: Returns true if the specified object is a tokenization that is equal to this one.
equals(Object[], Object[]) - Static method in class com.aliasi.util.Arrays: Return true if the specified arrays are the same length and contain the same elements.
equals(Object) - Method in class com.aliasi.util.Pair: Returns true if the specified object is a pair that has objects equal to this pair's.
equals(Object) - Method in class com.aliasi.util.ScoredObject: Returns true if the specified object is a scored object with an object equal to this object's and equal scores.
equivalenceEvaluation() - Method in class com.aliasi.cluster.ClusterScore: Returns the precision-recall evaluation corresponding to equalities in the reference and response clusterings.
error(String) - Method in class com.aliasi.io.Reporter: Utility method for error-level reports.
error(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler: Call delegated.
error(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler: Call delegated to SAXFilterHandler.mHandler.
estimate(Corpus<ObjectHandler<Tagging<F>>>, ChainCrfFeatureExtractor<F>, boolean, int, boolean, boolean, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.crf.ChainCrf: Return the CRF estimated using stochastic gradient descent with the specified prior from the specified corpus of taggings of type F pruned to the specified minimum feature count, using the specified feature extractor, automatically adding an intercept feature if the flag is true, allow unseen tag transitions as specified, using the specified training parameters for annealing, measuring convergence, and reporting the incremental results to the specified reporter.
estimate(Corpus<ObjectHandler<Chunking>>, TagChunkCodec, TokenizerFactory, ChainCrfFeatureExtractor<String>, boolean, int, boolean, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.crf.ChainCrfChunker: Return the chain CRF-based chunker estimated from the specified corpus, which is converted to a tagging corpus using the specified coder/decoder and tokenizer factory, then passed to the chain CRF estimate method along with the rest of the arguments.
estimate(Vector[][], int[], RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.dca.DiscreteChooser: Returns a discrete choice model estimated from the specified training data, prior, and learning parameters.
estimate(FeatureExtractor<F>, List<List<F>>, int[], int, RegressionPrior, int, AnnealingSchedule, double, int, int, Reporter) - Static method in class com.aliasi.dca.DiscreteObjectChooser: Because intercepts are ignored, they are not added to feature maps and should not be treated as noninformative in the prior.
estimate(Vector[], int[], RegressionPrior, AnnealingSchedule, Reporter, double, int, int) - Static method in class com.aliasi.stats.LogisticRegression: Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.
estimate(Vector[], int[], RegressionPrior, int, LogisticRegression, AnnealingSchedule, double, int, int, int, ObjectHandler<LogisticRegression>, Reporter) - Static method in class com.aliasi.stats.LogisticRegression: Estimate a logistic regression model from the specified input data using the specified Gaussian prior, initial learning rate and annealing rate, the minimum improvement per epoch, the minimum and maximum number of estimation epochs, and a reporter.
estimator(int) - Method in class com.aliasi.stats.PotentialScaleReduction: Returns the estimator for the specified chain.
EuclideanDistance - Class in com.aliasi.matrix: The EuclideanDistance class implements standard Euclidean distance between vectors.
EuclideanDistance() - Constructor for class com.aliasi.matrix.EuclideanDistance: Construct a new Euclidean distance.
evaluation() - Method in class com.aliasi.chunk.ChunkerEvaluator: Return the first-best chunking evaluation.
evaluation() - Method in class com.aliasi.sentences.SentenceEvaluator: Return the evaluation for this evaluator.
ExactDictionaryChunker - Class in com.aliasi.dict: An exact dictionary chunker extracts chunks based on exact matches of tokenized dictionary entries.
ExactDictionaryChunker(Dictionary<String>, TokenizerFactory) - Constructor for class com.aliasi.dict.ExactDictionaryChunker: Construct an exact dictionary chunker from the specified dictionary and tokenizer factory which is case sensitive and returns all matches.
ExactDictionaryChunker(Dictionary<String>, TokenizerFactory, boolean, boolean) - Constructor for class com.aliasi.dict.ExactDictionaryChunker: Construct an exact dictionary chunker from the specified dictionary and tokenizer factory, returning all matches or not as specified.
ExactPhraseMatch - Class in com.aliasi.coref.matchers: Implements a matching function that returns the score specified in the constructor if there is a match between the normal phrases of the mention and one of the mentions in the mention chain.
ExactPhraseMatch(int) - Constructor for class com.aliasi.coref.matchers.ExactPhraseMatch: Construct an instance of an exact phrase matcher that returns the specified score if there is a match.
Exceptions - Class in com.aliasi.util: Static utility methods for handling exceptions.
exponential(double, double) - Static method in class com.aliasi.stats.AnnealingSchedule: Return the exponential annealing schedule with the specified initial learning rate and exponent.
extension(File) - Static method in class com.aliasi.util.Files: Returns the suffix of the file's name, defined as the part of the name after the final period, or null if there is no period in the name.
extensionCount(char[], int, int) - Method in interface com.aliasi.lm.CharSeqCounter: Returns the sum of the counts of all character sequences one character longer than the specified character slice.
extensionCount(char[], int, int) - Method in class com.aliasi.lm.CharSeqMultiCounter
extensionCount(int[], int, int) - Method in interface com.aliasi.lm.IntSeqCounter: Returns the sum of the count of all sequences that extend the specified sequence by one integer.
extensionCount(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter
extensionCount(CharSequence) - Method in class com.aliasi.lm.TrieCharSeqCounter: Returns the sum of the counts of all character sequences one character longer than the specified character sequence.
extensionCount(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter
extract(List<E>, List<String>) - Method in interface com.aliasi.crf.ChainCrfFeatureExtractor: Return the chain CRF features for the specified list of input tokens and specified list of possible tags.

F

Factory<E> - Interface in com.aliasi.util: A Factory provides a generic interface for object creation of a specified type.
FAILURE_LABEL - Static variable in class com.aliasi.stats.BernoulliDistribution: The label for dimension zero: "failure".
falseNegative() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the number of false negative cases.
falseNegativeEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation: Return the set of chunks and character sequences whose end boundaries are in reference but not the response chunking.
falseNegatives(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator: Returns the list of false negative cases along with their classifications for items of the specified category.
falseNegatives() - Method in class com.aliasi.cluster.ClusterScore: Returns the set of false negative relations for this scoring.
falseNegativeSet() - Method in class com.aliasi.chunk.ChunkingEvaluation: Returns the set of false negatives.
falsePositive() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the number of false positive cases.
falsePositiveEndBoundaries() - Method in class com.aliasi.sentences.SentenceEvaluation: Return the set of chunks and character sequences whose end boundaries are in response but not the reference chunking.
falsePositives(String) - Method in class com.aliasi.classify.BaseClassifierEvaluator: Returns the list of false positive cases along with their classifications for items of the specified category.
falsePositives() - Method in class com.aliasi.cluster.ClusterScore: Returns the set of false positive relations for this scoring.
falsePositiveSet() - Method in class com.aliasi.chunk.ChunkingEvaluation: Returns the set of false positives.
FastCache<K,V> - Class in com.aliasi.util: A FastCache is a map implemented with soft references, optimistic copy-on-write updates, and approximate count-based pruning.
FastCache(int) - Constructor for class com.aliasi.util.FastCache: Constrcut a fast cache of the specified size and default load factor.
FastCache(int, double) - Constructor for class com.aliasi.util.FastCache: Construct a fast cache of the specified size (measured in number of hash buckets) and load factor.
fatal(String) - Method in class com.aliasi.io.Reporter: Utility method for fatal-level reports.
fatalError(SAXParseException) - Method in class com.aliasi.xml.DelegatingHandler: Call delegated.
fatalError(SAXParseException) - Method in class com.aliasi.xml.SAXFilterHandler: Call delegated to SAXFilterHandler.mHandler.
featureActivationThreshold() - Method in class com.aliasi.classify.BernoulliClassifier: Returns the feature activation threshold.
featureExtractor() - Method in class com.aliasi.classify.BernoulliClassifier: Return the feature extractor for this classifier.
featureExtractor() - Method in class com.aliasi.classify.KnnClassifier: Returns the feature extractor for ths KNN classifier.
featureExtractor() - Method in class com.aliasi.classify.LogisticRegressionClassifier: Returns an immutable view of the feature extractor for this classifier.
featureExtractor() - Method in class com.aliasi.classify.PerceptronClassifier: Returns the feature extractor for this perceptron.
featureExtractor() - Method in class com.aliasi.classify.TfIdfClassifierTrainer: Return the feature extractor for this classifier.
featureExtractor() - Method in class com.aliasi.cluster.KMeansClusterer: Returns the feature extractor for this clusterer.
featureExtractor() - Method in class com.aliasi.crf.ChainCrf: Return the feature extractor for this CRF.
featureExtractor() - Method in class com.aliasi.dca.DiscreteObjectChooser: Return the feature extractor for this chooser.
FeatureExtractor<E> - Interface in com.aliasi.util: A FeatureExtractor provides a method of converting generic input objects into feature vectors.
FeatureExtractorFilter<E> - Class in com.aliasi.features: A FeatureExtractorFilter contains a reference to another feature extractor.
FeatureExtractorFilter(FeatureExtractor<? super E>) - Constructor for class com.aliasi.features.FeatureExtractorFilter: Construct a feature extractor filter from the specified feature extractor.
features(E) - Method in class com.aliasi.features.AddFeatureExtractor
features(E) - Method in class com.aliasi.features.CacheFeatureExtractor
features(CharSequence) - Method in class com.aliasi.features.ChunkerFeatureExtractor
features(E) - Method in class com.aliasi.features.FeatureExtractorFilter: Return the features extracted by the contained feature extractor.
Features - Class in com.aliasi.features: The Features class contains static utility classes for manipulating features.
features(E) - Method in class com.aliasi.features.InteractionFeatureExtractor: Return the interaction feature map for the specified input.
features(E) - Method in class com.aliasi.features.LengthNormFeatureExtractor: Return a length-normalized feature version of the feature vector returned by the contained vector.
features(E) - Method in class com.aliasi.features.ModifiedFeatureExtractor: Return the modified form of the feature vector produced by the base feature extractor.
features(E) - Method in class com.aliasi.features.PrefixedFeatureExtractor: Return the feature map derived by prefixing the specified prefix to the feature names extracted by the base feature extractor.
features(CharSequence) - Method in class com.aliasi.features.StringLengthFeatureExtractor
features(E) - Method in class com.aliasi.features.ZScoreFeatureExtractor: Return the feature map resulting from converting the feature map produced by the underlying feature extractor to z-scores.
features(CharSequence) - Method in class com.aliasi.tokenizer.TokenFeatureExtractor: Return the feature vector for the specified character sequence.
features(E) - Method in interface com.aliasi.util.FeatureExtractor: Return the feature vector for the specified input.
featureSymbolTable() - Method in class com.aliasi.classify.LogisticRegressionClassifier: Returns an unmodifiable view of the symbol table used for features in this classifier.
featureSymbolTable() - Method in class com.aliasi.crf.ChainCrf: Returns an unmodifiable view of the symbol table for features for this CRF.
featureSymbolTable() - Method in class com.aliasi.dca.DiscreteObjectChooser: Returns an unmodifiable view of the feature symbol table underlying this chooser.
featureValues(String) - Method in class com.aliasi.classify.LogisticRegressionClassifier: Returns a mapping from features to their parameter values for the specified category.
FEMALE_GENDER - Static variable in class com.aliasi.coref.EnglishMentionFactory: The gender for females.
FEMALE_HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory: The set of female honorifics.
FIBONACCI_SEQUENCE - Static variable in class com.aliasi.util.Math: An array of the Fibonacci sequence up the maximum value representable as a long integer.
FIELDSET - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element fieldset.
fieldset() - Method in class com.aliasi.xml.XHtmlWriter: Start an fieldset element with no attributes.
fieldset(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an fieldset element with the specified attributes.
fieldset(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an fieldset element with the specified attribute and value.
fieldset(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an fieldset element with the specified attributes and values.
fieldset(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an fieldset element with the specified attributes and values.
fieldset(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an fieldset element with the specified attributes and values.
file(File, String) - Static method in class com.aliasi.io.Reporters: Return a reporter that writes to the specified file using the specified encoding.
FileExtensionFilter - Class in com.aliasi.io: A file filter that accepts all base files with a suffix with a specified value or one of a set of specified values.
FileExtensionFilter(String[], boolean) - Constructor for class com.aliasi.io.FileExtensionFilter: Deprecated. Use the variable-length argument version FileExtensionFilter.FileExtensionFilter(boolean,String[]) instead.
FileExtensionFilter(boolean, String...) - Constructor for class com.aliasi.io.FileExtensionFilter: Create a file filter that accepts files with the specified extensions, optionally accepting directories.
FileExtensionFilter(String, boolean) - Constructor for class com.aliasi.io.FileExtensionFilter: Create a file filter that accepts files with the specified extension, optionally accepting directories.
FileExtensionFilter(String) - Constructor for class com.aliasi.io.FileExtensionFilter: Create a file filter that accepts files with the specified extension and accepts all directories.
FileExtensionFilter(String...) - Constructor for class com.aliasi.io.FileExtensionFilter: Create a file filter that accepts files with the specified extensions and accepts all directories.
FileLineReader - Class in com.aliasi.io: A FileLineReader instance represents the lines of a file.
FileLineReader(File, String) - Constructor for class com.aliasi.io.FileLineReader: Construct a new file lines iterator from the specified file using the specified character encoding, assuming no compression.
FileLineReader(File, String, boolean) - Constructor for class com.aliasi.io.FileLineReader: Construct a new file lines iterator from the specified file using the specified character encoding, uncompressing gzipped input if the compresison flag is true.
fileNameFilter() - Method in class com.aliasi.io.FileExtensionFilter: Return the file name filter corresponding to this extension filter.
Files - Class in com.aliasi.util: Static utility methods for processing files.
FILES_ONLY_FILE_FILTER - Static variable in class com.aliasi.util.Files: A file filter that accepts all normal files, as specified by File.isFile().
filter(String, Number) - Method in class com.aliasi.features.BoundedFeatureExtractor: Return the bounded value corresponding to the specified value.
filter(String, Number) - Method in class com.aliasi.features.KnownFeatureExtractor: Returns the value if the feature is in the known feature set and null otherwise.
filter(String, Number) - Method in class com.aliasi.features.ModifiedFeatureExtractor: Return the value for the specified original feature and value, or null to remove the feature altogether.
filteredCharacters(char[], int, int) - Method in class com.aliasi.xml.TextContentFilter: Handle filtered character content.
filterElement(String) - Method in class com.aliasi.xml.TextContentFilter: Filter the text content of elements with the specified qualified name.
finishDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegateHandler: This method is called when this handler has finished delegating the specified element to the specified handler.
finishDelegate(String, DefaultHandler) - Method in class com.aliasi.xml.DelegatingHandler: This method will be called whenever the close tag for the specified element is found.
finite(String, double) - Static method in class com.aliasi.util.Exceptions: Throws an illegal argument exception if the specified value is not finite.
finiteNonNegative(String, double) - Static method in class com.aliasi.util.Exceptions: Throws an illegal argument exception if the specified value is not finite and non-negative, using the specified variable name in the report.
first() - Method in class com.aliasi.util.BoundedPriorityQueue: Returns the highest scoring object in the priority queue.
first() - Method in class com.aliasi.util.ShortPriorityQueue: Returns the largest element in the queue.
firstCharEditCost() - Method in class com.aliasi.spell.CompiledSpellChecker: Returns the cost penalty for editing the first character in a token.
FixedWeightEditDistance - Class in com.aliasi.spell: A FixedWeightEditDistance sets constant weights for the edit operations for weighted edit distance.
FixedWeightEditDistance(double, double, double, double, double) - Constructor for class com.aliasi.spell.FixedWeightEditDistance: Construct a weighted edit distance with the specified constant weights for edits.
FixedWeightEditDistance() - Constructor for class com.aliasi.spell.FixedWeightEditDistance: Constructs an edit distance where the match weight is zero and all other weights are positive infinity.
floatValue() - Method in class com.aliasi.util.Counter: Returns the value of this counter as a float.
flush() - Method in class com.aliasi.io.BitOutput: Flushes writes to the underlying output stream.
fMeasure() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the F_₁ measure.
fMeasure(double) - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the F_{_β} value for the specified β.
fMeasure(double, double, double) - Static method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the F_{_β} measure for a specified β, recall and precision values.
fold() - Method in class com.aliasi.corpus.XValidatingObjectCorpus: Returns the current fold.
FONT - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element font.
font() - Method in class com.aliasi.xml.XHtmlWriter: Start an font element with no attributes.
font(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an font element with the specified attributes.
font(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an font element with the specified attribute and value.
font(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an font element with the specified attributes and values.
font(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an font element with the specified attributes and values.
font(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an font element with the specified attributes and values.
FOR - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the for attribute.
forceFinalStop() - Method in class com.aliasi.sentences.HeuristicSentenceModel: Returns true if this model treats any input-final token as a stop.
FORM - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element form.
form() - Method in class com.aliasi.xml.XHtmlWriter: Start an form element with no attributes.
form(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an form element with the specified attributes.
form(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an form element with the specified attribute and value.
form(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an form element with the specified attributes and values.
form(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an form element with the specified attributes and values.
form(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an form element with the specified attributes and values.
ForwardBackwardTagLattice<E> - Class in com.aliasi.crf: The ForwardBackwardTagLattice provides an implementation of a tag lattice based on forward, backward, transition and normalizing values.
ForwardBackwardTagLattice(List<E>, List<String>, double[][], double[][], double[][][], double) - Constructor for class com.aliasi.crf.ForwardBackwardTagLattice: Construct a log tag lattice from the specified list of tokens, list of tags in order of symbol identifier along with log forward, backward, transition and normalizing values on a log probability scale.
fowlkesMallows() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Return the Fowlkes-Mallows score.
FRAME - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element frame.
frame() - Method in class com.aliasi.xml.XHtmlWriter: Start an frame element with no attributes.
frame(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an frame element with the specified attributes.
frame(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an frame element with the specified attribute and value.
frame(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an frame element with the specified attributes and values.
frame(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an frame element with the specified attributes and values.
frame(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an frame element with the specified attributes and values.
FRAME_ATT - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the frame attribute.
FRAMESET - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element frameset.
frameset() - Method in class com.aliasi.xml.XHtmlWriter: Start an frameset element with no attributes.
frameset(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an frameset element with the specified attributes.
frameset(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an frameset element with the specified attribute and value.
frameset(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an frameset element with the specified attributes and values.
frameset(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an frameset element with the specified attributes and values.
frameset(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an frameset element with the specified attributes and values.
frequentTermSet(int, int) - Method in class com.aliasi.lm.TokenizedLM: Returns the most frequent n-gram terms in the training data up to the specified maximum number.
functionArgs(String, Object[]) - Static method in class com.aliasi.util.Strings: Return a string representation of a function applied to its arguments.
functionArgsList(Object[]) - Static method in class com.aliasi.util.Strings: Returns a string representation of the specified array as a function's argument list.

G

gaussian(double, boolean) - Static method in class com.aliasi.stats.RegressionPrior: Returns the Gaussian prior with the specified prior variance and indication of whether the intercept is given a noninformative prior.
gaussian(double[]) - Static method in class com.aliasi.stats.RegressionPrior: Returns the Gaussian prior with the specified priors for each dimension.
GaussianRadialBasisKernel - Class in com.aliasi.matrix: A GaussianRadialBasisKernel provides a kernel based on a Gaussian radial basis function with a fixed variance parameter.
GaussianRadialBasisKernel(double) - Constructor for class com.aliasi.matrix.GaussianRadialBasisKernel: Construct a Gaussian radial basis kernel with the specified radius of influence.
gender() - Method in class com.aliasi.coref.AbstractMentionChain: Returns the gender of this mention chain.
gender(String) - Method in class com.aliasi.coref.AbstractMentionFactory: Returns a string rerpesenting the gender entities with the specified entity type.
gender() - Method in class com.aliasi.coref.CachedMention: Returns a string representing the gender of this mention.
gender(String) - Method in class com.aliasi.coref.EnglishMentionFactory: Returns a string rerpesenting the gender entities with the specified entity type.
gender() - Method in interface com.aliasi.coref.Mention: Returns a string representing the gender of this mention.
gender() - Method in interface com.aliasi.coref.MentionChain: Returns the gender for this mention chain.
GenderKiller - Class in com.aliasi.coref.matchers: Implements a killing function that defeats a match of a mention against a mention chain with an incompatible gender.
GenderKiller() - Constructor for class com.aliasi.coref.matchers.GenderKiller: Construct a new gender killer.
get(Object) - Method in class com.aliasi.util.BinaryMap: Returns the Integer with value 1 if the specified argument is mapped to 1 by this map, and returns null otherwise.
get(Object) - Method in class com.aliasi.util.FastCache: Returns the value of the specified key or null if there is no value attached.
get(Object) - Method in class com.aliasi.util.HardFastCache: Returns the value of the specified key or null if there is no value attached.
get(int) - Method in class com.aliasi.util.Tuple: Returns the object at the specified index in the tuple.
getArgument(String) - Method in class com.aliasi.util.AbstractCommand: Returns the value of the command-line argument with the specified key, or the value of the key in the default properties, or null if it does not exist.
getArgumentCreatableFile(String) - Method in class com.aliasi.util.AbstractCommand: Returns the model file specified by the command line after guaranteeing that the file can be created.
getArgumentDirectory(String) - Method in class com.aliasi.util.AbstractCommand: Returns the value of the argument with the specified key converted to a directory.
getArgumentDouble(String) - Method in class com.aliasi.util.AbstractCommand: Returns the value of the argument with the specified key converted to a double value.
getArgumentExistingNormalFile(String) - Method in class com.aliasi.util.AbstractCommand: Returns the existing normal file named by the value of the specified key.
getArgumentFile(String) - Method in class com.aliasi.util.AbstractCommand: Returns the value of the argument with the specified key converted to a file.
getArgumentInt(String) - Method in class com.aliasi.util.AbstractCommand: Returns the value of the argument with the specified key converted to an integer value.
getArgumentLong(String) - Method in class com.aliasi.util.AbstractCommand: Returns the value of the argument with the specified key converted to a long value.
getArguments() - Method in class com.aliasi.util.AbstractCommand: Returns the complete list of command-line parameters for this abstract command.
getArray() - Method in class com.aliasi.util.CommaSeparatedValues: Returns the underlying array for this comma-separated values object.
getAttributesStack() - Method in class com.aliasi.xml.ElementStackFilter: Returns an unmodifiable view of the stack of attributes associated with the stack of elements.
getBareArgument(int) - Method in class com.aliasi.util.AbstractCommand: Returns the specified bare argument.
getCharEncoding() - Method in class com.aliasi.corpus.DiskCorpus: Returns the current character encoding, or null if none has been specified.
getClassification() - Method in class com.aliasi.classify.Classified: Return the classification of the object.
getClassification() - Method in class com.aliasi.classify.RankedClassified: Return the classification of the object.
getCount(long) - Method in class com.aliasi.stats.MultivariateEstimator: Returns the count in this estimator for the specified outcome.
getCount(String) - Method in class com.aliasi.stats.MultivariateEstimator: Returns the count for the specified outcome.
getCount(E) - Method in class com.aliasi.util.ObjectToCounterMap: Returns the current count value for the specified key.
getDecoder() - Method in class com.aliasi.chunk.HmmChunker: Returns the underlying hidden Markov model decoder for this chunker.
getDefaultJavaCharset() - Static method in class com.aliasi.util.Streams: Returns Java's canonical name of the default character set for the system's current default locale.
getDelegate(String) - Method in class com.aliasi.xml.DelegatingHandler: Returns the delegate for the specified qualified element name.
getElementStack() - Method in class com.aliasi.xml.ElementStackFilter: Returns an unmodifiable view of the stack of qualified names of elements.
getExistingArgument(String) - Method in class com.aliasi.util.AbstractCommand: Returns the same value as AbstractCommand.getArgument(String), but throws an exception if the argument does not exist.
getHandler() - Method in class com.aliasi.corpus.Parser: Returns the current content handler.
getHmm() - Method in class com.aliasi.hmm.HmmDecoder: Returns the hidden Markov model underlying this decoder.
getHmmEstimator() - Method in class com.aliasi.chunk.CharLmHmmChunker: Returns the underlying hidden Markov model estimator for this chunker estimator.
getIndex(String) - Method in class com.aliasi.classify.ConfusionMatrix: Return the index of the specified category in the list of categories, or -1 if it is not a category for this confusion matrix.
getLambdaFactor() - Method in class com.aliasi.lm.NGramProcessLM: Returns the current setting of the interpolation ratio hyperparameter.
getLastCaseReport() - Method in class com.aliasi.spell.SpellEvaluator: Returns a string-based representation of the last test case.
getLevel() - Method in class com.aliasi.io.Reporter: Return the log level for this reporter.
getMaxDistance() - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer: Returns the maximum distance for clusters in a dendrogram.
getObject() - Method in class com.aliasi.classify.Classified: Return the object that is classified.
getObject() - Method in class com.aliasi.util.ScoredObject: Returns the object attached to this scored object.
getOrAddSymbol(String) - Method in class com.aliasi.symbol.MapSymbolTable: Returns the identifier for the specified symbol, adding it to the symbol table if necessary.
getOrAddSymbol(String) - Method in interface com.aliasi.symbol.SymbolTable: Returns the identifier for the specified symbol.
getOrAddSymbol(String) - Method in class com.aliasi.symbol.SymbolTableCompiler: Throws an unsupported operation exception.
getOrAddSymbolInteger(String) - Method in class com.aliasi.symbol.MapSymbolTable: Returns the integer identifier for the specified symbol, adding it to the symbol table if necessary.
getOrCreateArgumentDirectory(String) - Method in class com.aliasi.util.AbstractCommand: Returns the value of the argument with the specified key converted to a directory.
getPattern() - Method in class com.aliasi.tokenizer.RegExFilteredTokenizerFactory: Returns the pattern for this regex-filtered tokenizer.
getProcessLM() - Method in class com.aliasi.lm.NGramBoundaryLM: Returns the underlying n-gram process language model for this boundary language model.
getSet(K) - Method in class com.aliasi.util.ObjectToSet: Returns the set of values for the specified key, or the empty set if there have been none added.
getSystemId() - Method in class com.aliasi.corpus.DiskCorpus: Return the system identifier for this corpus or null if none has been specified.
getText() - Method in class com.aliasi.xml.TextAccumulatorHandler: Returns the text thus far accumulated.
getTokenizerFactory() - Method in class com.aliasi.chunk.CharLmHmmChunker: Return the tokenizer factory for this chunker.
getTokenizerFactory() - Method in class com.aliasi.chunk.HmmChunker: Returns the underlying tokenizer factory for this chunker.
getValue(E) - Method in class com.aliasi.util.ObjectToDoubleMap: Returns the value of the specified key in the map.
getXMLHandler() - Method in class com.aliasi.corpus.XMLParser: Return the default handler for SAX events.
gibbsSample(int[][], short, double, double, Random) - Static method in class com.aliasi.cluster.LatentDirichletAllocation: Return an iterator over Gibbs samples for the specified document-word corpus, number of topics, priors and randomizer.
gibbsSampler(int[][], short, double, double, int, int, int, Random, ObjectHandler<LatentDirichletAllocation.GibbsSample>) - Static method in class com.aliasi.cluster.LatentDirichletAllocation: Run Gibbs sampling for the specified multinomial data, number of topics, priors, search parameters, randomization and callback sample handler.
globalEstimator() - Method in class com.aliasi.stats.PotentialScaleReduction: Returns the estimator that pools the estimates across the chains.
GOLDEN_RATIO - Static variable in class com.aliasi.util.Math: The value of the golden ratio.
gradient(double, int) - Method in class com.aliasi.stats.RegressionPrior: Returns the contribution to the gradient of the error function of the specified parameter value for the specified dimension.
GroupCharactersFilter - Class in com.aliasi.xml: Provides a SAX filter that groups sequential calls to GroupCharactersFilter.characters(char[],int,int) into a single call with all of the content concatenated.
GroupCharactersFilter(DefaultHandler) - Constructor for class com.aliasi.xml.GroupCharactersFilter: Construct a character grouping filter that delegates events to the specified handler.
GroupCharactersFilter(DefaultHandler, boolean) - Constructor for class com.aliasi.xml.GroupCharactersFilter: Construct a character grouping filter without a specified handler to which to delegate events.

H

H1 - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element h1.
h1() - Method in class com.aliasi.xml.XHtmlWriter: Start an h1 element with no attributes.
h1(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an h1 element with the specified attributes.
h1(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h1 element with the specified attribute and value.
h1(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h1 element with the specified attributes and values.
h1(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h1 element with the specified attributes and values.
h1(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h1 element with the specified attributes and values.
H2 - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element h2.
h2() - Method in class com.aliasi.xml.XHtmlWriter: Start an h2 element with no attributes.
h2(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an h2 element with the specified attributes.
h2(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h2 element with the specified attribute and value.
h2(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h2 element with the specified attributes and values.
h2(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h2 element with the specified attributes and values.
h2(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h2 element with the specified attributes and values.
H3 - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element h3.
h3() - Method in class com.aliasi.xml.XHtmlWriter: Start an h3 element with no attributes.
h3(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an h3 element with the specified attributes.
h3(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h3 element with the specified attribute and value.
h3(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h3 element with the specified attributes and values.
h3(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h3 element with the specified attributes and values.
h3(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h3 element with the specified attributes and values.
H4 - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element h4.
h4() - Method in class com.aliasi.xml.XHtmlWriter: Start an h4 element with no attributes.
h4(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an h4 element with the specified attributes.
h4(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h4 element with the specified attribute and value.
h4(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h4 element with the specified attributes and values.
h4(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h4 element with the specified attributes and values.
h4(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h4 element with the specified attributes and values.
H5 - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element h5.
h5() - Method in class com.aliasi.xml.XHtmlWriter: Start an h5 element with no attributes.
h5(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an h5 element with the specified attributes.
h5(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h5 element with the specified attribute and value.
h5(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h5 element with the specified attributes and values.
h5(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h5 element with the specified attributes and values.
h5(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h5 element with the specified attributes and values.
H6 - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element h6.
h6() - Method in class com.aliasi.xml.XHtmlWriter: Start an h6 element with no attributes.
h6(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an h6 element with the specified attributes.
h6(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h6 element with the specified attribute and value.
h6(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h6 element with the specified attributes and values.
h6(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h6 element with the specified attributes and values.
h6(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an h6 element with the specified attributes and values.
handle(Chunking) - Method in class com.aliasi.chunk.CharLmHmmChunker: Handle the specified chunking by tokenizing it, assigning tags and training the underlying hidden Markov model.
handle(Chunking) - Method in class com.aliasi.chunk.CharLmRescoringChunker: Trains this chunker with the specified chunking.
handle(Chunking) - Method in class com.aliasi.chunk.ChunkerEvaluator: Handle the specified reference chunking.
handle(Chunking) - Method in class com.aliasi.chunk.TrainTokenShapeChunker: Add the specified chunking as a training event.
handle(Classified<E>) - Method in class com.aliasi.classify.BaseClassifierEvaluator: Add the specified classified object to this evaluator.
handle(Classified<E>) - Method in class com.aliasi.classify.BernoulliClassifier: Handle the specified training classified object.
handle(Classified<CharSequence>) - Method in class com.aliasi.classify.BinaryLMClassifier: Train this classifier using the character sequence from the specified classified object if the best category of the classification is the accept category for this binary classifier.
handle(Classified<E>) - Method in class com.aliasi.classify.ConditionalClassifierEvaluator
handle(Classified<CharSequence>) - Method in class com.aliasi.classify.DynamicLMClassifier: Provides a training instance for the specified character sequence using the best category from the specified classification.
handle(Classified<E>) - Method in class com.aliasi.classify.KnnClassifier: Handle the specified classified object as a training instance.
handle(Classified<E>) - Method in class com.aliasi.classify.RankedClassifierEvaluator
handle(Classified<E>) - Method in class com.aliasi.classify.ScoredClassifierEvaluator
handle(Classified<E>) - Method in class com.aliasi.classify.TfIdfClassifierTrainer: Handle the specified classified object as training data.
handle(Classified<CharSequence>) - Method in class com.aliasi.classify.TradNaiveBayesClassifier: Trains the classifier with the specified classified character sequence.
handle(E) - Method in interface com.aliasi.corpus.ObjectHandler: Handle the specified object.
handle(E) - Method in class com.aliasi.corpus.XValidatingObjectCorpus: Add the specified item to the end of the corpus.
handle(Tagging<String>) - Method in class com.aliasi.hmm.AbstractHmmEstimator: Train the estimator with the specified tokens, whitespaces and states.
handle(CharSequence) - Method in class com.aliasi.lm.NGramBoundaryLM: Train the language model on the specified character sequence.
handle(CharSequence) - Method in class com.aliasi.lm.NGramProcessLM: Implements the object handler interface over character sequences for training.
handle(CharSequence) - Method in class com.aliasi.lm.TokenizedLM: Trains the language model on the specified character sequence.
handle(CharSequence) - Method in class com.aliasi.lm.UniformBoundaryLM: This method for training a character sequence is supplied for compatibility with the dynamic language model interface, but is implemented to do nothing.
handle(CharSequence) - Method in class com.aliasi.lm.UniformProcessLM: This method for training a character sequence is supplied for compatibility with the dynamic language model interface, but is implemented to do nothing.
handle(Chunking) - Method in class com.aliasi.sentences.SentenceEvaluator: Handle the specified reference chunking by extracting its character sequence, producing a response chunking from the contained sentence chunker, and adding the reference and result to the evaluation.
handle(CharSequence) - Method in class com.aliasi.spell.TfIdfDistance: Add the specified character sequence as a document for training.
handle(CharSequence) - Method in class com.aliasi.spell.TrainSpellChecker: Train the spell checker on the specified character sequence.
handle(double) - Method in class com.aliasi.stats.OnlineNormalEstimator: Add the specified value to the collection of samples for this estimator.
handle(Tagging<E>) - Method in class com.aliasi.tag.MarginalTaggerEvaluator: Add a test case consisting of the specified reference tagging along with the lattice output of the marginal tagger being evaluated on the tokens of the reference tagging.
handle(Tagging<E>) - Method in class com.aliasi.tag.NBestTaggerEvaluator: Add the specified reference tagging as a test case, with a response tagging computed by the contained n-best tagger.
handle(Tagging<E>) - Method in class com.aliasi.tag.TaggerEvaluator: Add a case for the specified reference tagging using the contained tagger to generate a response tagging.
handleNGrams(int, int, ObjectHandler<String[]>) - Method in class com.aliasi.lm.TokenizedLM: Visits the n-grams of the specified length with at least the specified minimum count stored in the underlying counter of this tokenized language model and passes them to the specified handler.
handleNGrams(int, int, ObjectHandler<int[]>) - Method in class com.aliasi.lm.TrieIntSeqCounter: Supplies each n-gram of the specified length and with greater than or equal to the specified minimum count to the specified handler.
Handler - Interface in com.aliasi.corpus: The Handler marker interface indicates that a class will be implement a handle method appropriate for a particular Parser.
HardFastCache<K,V> - Class in com.aliasi.util: A HardFastCache is a map implemented with hard references, optimistic copy-on-write updates, and approximate count-based pruning.
HardFastCache(int) - Constructor for class com.aliasi.util.HardFastCache: Constrcut a fast cache of the specified size and default load factor.
HardFastCache(int, double) - Constructor for class com.aliasi.util.HardFastCache: Construct a fast cache of the specified size and load factor.
HAS_PROPERTY_VALUE - Static variable in class com.aliasi.util.AbstractCommand: The value assigned to arguments beginning with '-' and not containing an '='.
hasArgument(String) - Method in class com.aliasi.util.AbstractCommand: Returns true if there is a command-line argument specified for the key.
hasFlag(String) - Method in class com.aliasi.util.AbstractCommand: Returns true if the arguments set the specified flag.
hashCode() - Method in interface com.aliasi.chunk.Chunk: Returns this chunk's hash code.
hashCode() - Method in class com.aliasi.chunk.ChunkAndCharSeq: Returns the cached hash code for this chunk and character sequence.
hashCode() - Method in interface com.aliasi.chunk.Chunking: Returns the hash code for this chunking.
hashCode() - Method in class com.aliasi.chunk.ChunkingImpl
hashCode(Chunking) - Static method in class com.aliasi.chunk.ChunkingImpl: Returns the hash code for the specified chunking.
hashCode() - Method in class com.aliasi.coref.AbstractMentionChain: Returns the hash code for this mention chain.
hashCode() - Method in class com.aliasi.dict.DictionaryEntry: Returns the hash code for this entry.
hashCode() - Method in class com.aliasi.matrix.AbstractMatrix: Returns a hash code as specified in the Matrix interface's documentation.
hashCode() - Method in class com.aliasi.matrix.AbstractVector: Returns the hash code for this vector according to the specification.
hashCode() - Method in interface com.aliasi.matrix.Matrix: Return the hash code for the matrix.
hashCode() - Method in class com.aliasi.matrix.SparseFloatVector: Returns the hash code for this sparse float vector.
hashCode() - Method in interface com.aliasi.matrix.Vector: Return the hash code for this vector.
hashCode() - Method in class com.aliasi.tag.StringTagging: Returns a hash code computed from the underlying string and tags.
hashCode() - Method in class com.aliasi.tokenizer.Tokenization: Returns the hash code for this tokenization.
hashCode() - Method in class com.aliasi.util.Pair: Returns the hash code of the pair.
hashCode(CharSequence) - Static method in class com.aliasi.util.Strings: Returns a hash code for a character sequence that is equivalent to the hash code generated for a its string yield.
hashCode() - Method in class com.aliasi.util.Tuple: Returns the hash code for this list.
hasNext() - Method in class com.aliasi.util.Iterators.Buffered: Returns true if the next call to Iterators.Buffered.next() will return a non-null value.
hasNext() - Method in class com.aliasi.util.Iterators.Filter: Returns true if calls to next() will return a value.
hasNext() - Method in class com.aliasi.util.Iterators.Modifier: Returns true if the underlying iterator has more elements.
hasNext() - Method in class com.aliasi.util.Iterators.PrimitiveInt: Returns true if there is another integer in the iteration.
hasProperty(String) - Method in class com.aliasi.util.AbstractCommand: Returns true if the arguments have the specified property defined.
hasZeroDiagonal(Matrix) - Static method in class com.aliasi.matrix.Matrices: Returns true if the specified matrix has only zero values on its diagonal.
HEAD - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element head.
head() - Method in class com.aliasi.xml.XHtmlWriter: Start an head element with no attributes.
head(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an head element with the specified attributes.
head(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an head element with the specified attribute and value.
head(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an head element with the specified attributes and values.
head(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an head element with the specified attributes and values.
head(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an head element with the specified attributes and values.
HEADERS - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the headers attribute.
headSet(E) - Method in class com.aliasi.util.BoundedPriorityQueue: Return the set of elements in this queue strictly less than the specified element according to the comparator for this queue.
headSet(E) - Method in class com.aliasi.util.ShortPriorityQueue: Return the set of elements in this queue strictly less than the specified element according to the comparator for this queue.
HEIGHT - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the height attribute.
HeuristicSentenceModel - Class in com.aliasi.sentences: A HeuristicSentenceModel determines sentence boundaries based on sets of tokens, a pair of flags, and an overridable method describing boundary conditions.
HeuristicSentenceModel(Set<String>, Set<String>, Set<String>) - Constructor for class com.aliasi.sentences.HeuristicSentenceModel: Constructs a capitalization-sensitive heuristic sentence model with the specified set of possible stop tokens, impossible penultimate tokens, and impossible sentence start tokens.
HeuristicSentenceModel(Set<String>, Set<String>, Set<String>, boolean, boolean) - Constructor for class com.aliasi.sentences.HeuristicSentenceModel: Construct a heuristic sentence model with the specified sets of possible stop tokens, impossible penultimate tokens, impossible start tokens, and flags for whether the final token is forced to be a stop, and whether parentheses are balanced.
HiddenMarkovModel - Interface in com.aliasi.hmm: The HiddenMarkovModel interface provides a means for definining the probability estimates and symbol table underlying a hidden Markov model (HMM).
hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.AbstractHierarchicalClusterer: Returns the array of clusters derived from performing clustering with this class's specified maximum distance.
hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.CompleteLinkClusterer
hierarchicalCluster(Set<? extends E>) - Method in interface com.aliasi.cluster.HierarchicalClusterer: Return the dendrogram representing the complete hierarchical clustering of the specified elements.
hierarchicalCluster(Set<? extends E>) - Method in class com.aliasi.cluster.SingleLinkClusterer: Return the array of clusters derived from the specified distance matrix by performing single-link clustering up to the specified maximum distance bound.
HierarchicalClusterer<E> - Interface in com.aliasi.cluster: The HierarchicalClusterer interface defines a means of clustering a set of objects into a hierarchy of clusters.
HmmCharLmEstimator - Class in com.aliasi.hmm: An HmmCharLmEstimator employs a maximum a posteriori transition estimator and a bounded character language model emission estimator.
HmmCharLmEstimator() - Constructor for class com.aliasi.hmm.HmmCharLmEstimator: Construct an HMM estimator with default parameter settings.
HmmCharLmEstimator(int, int, double) - Constructor for class com.aliasi.hmm.HmmCharLmEstimator: Construct an HMM estimator with the specified maximum character n-gram size, maximum number of characters in the data, and character n-gram interpolation parameter, with no state smoothing.
HmmCharLmEstimator(int, int, double, boolean) - Constructor for class com.aliasi.hmm.HmmCharLmEstimator: Construct an HMM estimator with the specified maximum character n-gram size, maximum number of characters in the data, character n-gram interpolation parameter, and state smoothing.
HmmChunker - Class in com.aliasi.chunk: An HmmChunker uses a hidden Markov model to perform chunking over tokenized character sequences.
HmmChunker(TokenizerFactory, HmmDecoder) - Constructor for class com.aliasi.chunk.HmmChunker: Construct a chunker from the specified tokenizer factory and hidden Markov model decoder.
HmmDecoder - Class in com.aliasi.hmm: An HmmDecoder provides implementations of first-best, n-best and marginal taggers for hidden Markov models (HMMs).
HmmDecoder(HiddenMarkovModel) - Constructor for class com.aliasi.hmm.HmmDecoder: Construct an HMM decoder from the specified HMM.
HmmDecoder(HiddenMarkovModel, Map<String, double[]>, Map<String, double[]>) - Constructor for class com.aliasi.hmm.HmmDecoder: Construct an HMM decoder from the specified HMM using the specified caches for linear and log probabilities.
HmmDecoder(HiddenMarkovModel, Map<String, double[]>, Map<String, double[]>, double, double) - Constructor for class com.aliasi.hmm.HmmDecoder: Construct an HMM decoder from the specified HMM using the specified caches for linear and log probabilities, with the specified beam width for emission estimates.
HonorificConflictKiller - Class in com.aliasi.coref.matchers: Implements a killing function that defeats a match of a mention against a mention chain with an incompatible honorific.
HonorificConflictKiller() - Constructor for class com.aliasi.coref.matchers.HonorificConflictKiller: Construct a new honorific killer.
honorifics() - Method in class com.aliasi.coref.AbstractMentionChain: Returns the set of honorifics for this mention chain.
honorifics() - Method in class com.aliasi.coref.CachedMention: Returns the set of honorifics which occur in this mention.
HONORIFICS - Static variable in class com.aliasi.coref.EnglishMentionFactory: The complete set of male, female, and generic honorifics.
honorifics() - Method in interface com.aliasi.coref.Mention: Returns the set of honorifics which occur in this mention.
honorifics() - Method in interface com.aliasi.coref.MentionChain: Honorific phrases attached to instances of this mention chain.
HR - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element hr.
hr() - Method in class com.aliasi.xml.XHtmlWriter: Start an hr element with no attributes.
hr(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an hr element with the specified attributes.
hr(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an hr element with the specified attribute and value.
hr(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an hr element with the specified attributes and values.
hr(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an hr element with the specified attributes and values.
hr(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an hr element with the specified attributes and values.
HREF - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the href attribute.
HREFLANG - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the hreflang attribute.
HTML - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element html.
html() - Method in class com.aliasi.xml.XHtmlWriter: Start an html element with no attributes.
html(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an html element with the specified attributes.
html(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an html element with the specified attribute and value.
html(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an html element with the specified attributes and values.
html(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an html element with the specified attributes and values.
html(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an html element with the specified attributes and values.
HTTP_EQUIV - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the http-equiv attribute.
HyperbolicTangentKernel - Class in com.aliasi.matrix: A HyperbolicTangentKernel provides a kernel based on the hyperbolic tangent of a dot product with fixed linear scaling.
HyperbolicTangentKernel(double, double) - Constructor for class com.aliasi.matrix.HyperbolicTangentKernel: Construct a linearly offset hyperbolic tangent kernel with the specified slope and intercept parameters.

I

I - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element i.
i() - Method in class com.aliasi.xml.XHtmlWriter: Start an i element with no attributes.
i(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an i element with the specified attributes.
i(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an i element with the specified attribute and value.
i(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an i element with the specified attributes and values.
i(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an i element with the specified attributes and values.
i(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an i element with the specified attributes and values.
ID - Static variable in class com.aliasi.xml.XHtmlWriter: A constant for the id attribute.
identifier() - Method in class com.aliasi.coref.AbstractMentionChain: Returns the unique identifier for this mention chain.
identifier() - Method in interface com.aliasi.coref.MentionChain: The unique identifier for this mention chain (within a document).
idf(String) - Method in class com.aliasi.classify.TfIdfClassifierTrainer: Returns the inverse document frequency of the specified feature.
idf(String) - Method in class com.aliasi.spell.TfIdfDistance: Return the inverse-document frequency for the specified term.
idSet() - Method in class com.aliasi.symbol.MapSymbolTable: Returns the complete set of ids in this symbol table.
idToSymbol(Integer) - Method in class com.aliasi.symbol.MapSymbolTable: Returns the symbol for the specified identifier.
idToSymbol(int) - Method in class com.aliasi.symbol.MapSymbolTable
idToSymbol(int) - Method in interface com.aliasi.symbol.SymbolTable: Return the symbol corresponding to the specified identifier.
idToSymbol(int) - Method in class com.aliasi.symbol.SymbolTableCompiler: Return the symbol corresponding to the specified identifier.
IFRAME - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element iframe.
iframe() - Method in class com.aliasi.xml.XHtmlWriter: Start an iframe element with no attributes.
iframe(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an iframe element with the specified attributes.
iframe(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an iframe element with the specified attribute and value.
iframe(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an iframe element with the specified attributes and values.
iframe(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an iframe element with the specified attributes and values.
iframe(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an iframe element with the specified attributes and values.
ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.DelegatingHandler: Call ignored.
ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.SAXFilterHandler: Call delegated to SAXFilterHandler.mHandler.
ignorableWhitespace(char[], int, int) - Method in class com.aliasi.xml.SAXWriter: Does not print ignorable whitespace.
illegalArgument(String, String) - Method in class com.aliasi.util.AbstractCommand: Throw an illegal argument exception with the specified message and a report of the argument found.
illegalArgument(String, Exception) - Method in class com.aliasi.util.AbstractCommand: Throw an illegal argument exception with the specified message with a source provided by the specified exception.
illegalArgument(String) - Method in class com.aliasi.util.AbstractCommand: Throw an illegal argument exception with the specified message.
illegalPropertyArgument(String, String) - Method in class com.aliasi.util.AbstractCommand: Throw an illegal argument message with the specified message and a report of the specified key and its value.
IMG - Static variable in class com.aliasi.xml.XHtmlWriter: Constant for element img.
img() - Method in class com.aliasi.xml.XHtmlWriter: Start an img element with no attributes.
img(Attributes) - Method in class com.aliasi.xml.XHtmlWriter: Start an img element with the specified attributes.
img(String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an img element with the specified attribute and value.
img(String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an img element with the specified attributes and values.
img(String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an img element with the specified attributes and values.
img(String, String, String, String, String, String, String, String) - Method in class com.aliasi.xml.XHtmlWriter: Start an img element with the specified attributes and values.
IN_TAG_PREFIX - Static variable in class com.aliasi.chunk.BioTagChunkCodec: Default prefix for continuation tags, "I_".
incorrectResponse() - Method in class com.aliasi.classify.PrecisionRecallEvaluation: Returns the number of cases where the response is incorrect.
increment(int, int) - Method in class com.aliasi.classify.ConfusionMatrix: Add one to the cell in the matrix for the specified reference and response category indices.
increment(String, String) - Method in class com.aliasi.classify.ConfusionMatrix: Add one to the cell in the matrix for the specified reference and response categories.
increment(double, Vector) - Method in class com.aliasi.matrix.AbstractVector: Adds the specified vector multiplied by the specified scalar to this vector.
increment(double, Vector) - Method in class com.aliasi.matrix.DenseVector: Adds the specified vector multiplied by the specified scalar to this vector.
increment(double, Vector) - Method in class com.aliasi.matrix.SparseFloatVector: This operation is not supported for sparse vectors.
increment(double, Vector) - Method in interface com.aliasi.matrix.Vector: Adds the specified vector multiplied by the specified scalar to this vector.
increment() - Method in class com.aliasi.util.Counter: Increments the current count value.
increment(int) - Method in class com.aliasi.util.Counter: Increment the count value by the specified amount.
increment(E) - Method in class com.aliasi.util.ObjectToCounterMap: Increment the value of the specified key by 1.
increment(E, int) - Method in class com.aliasi.util.ObjectToCounterMap: Increment the value of the specified key by the specified amount.
increment(E, double) - Method in class com.aliasi.util.ObjectToDoubleMap: Increment the value of the specified key by the specified increment amount.
incrementByN(int, int, int) - Method in class com.aliasi.classify.ConfusionMatrix: Add n to the cell in the matrix for the specified reference and response category indices.
incrementPrefixes(char[], int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter: Increments the count of all prefixes of the specified character sequence up to the maximum length specified in the constructor.
incrementPrefixes(char[], int, int, int) - Method in class com.aliasi.lm.TrieCharSeqCounter: Increments the count of all prefixes of the specified character sequence up to the maximum length specified in the constructor.
incrementSequence(int[], int, int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter: Increments the count for the specified slice by the specified amount.
incrementSubsequences(int[], int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter: Increments the count for all subsequences of the specified integer sequence up to the specified maximum length.
incrementSubsequences(int[], int, int, int) - Method in class com.aliasi.lm.TrieIntSeqCounter: Increments the count for all subsequences of the specified integer sequence up to the specified maximum length with the specified count.
incrementSubstrin